AT3G17120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007338
Physical Location & Seq
Forward (+)
5841046 .. 5843624
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17120.4

Sequence Viewer

Length: 660 bp
ATGGGAATGAGTCTCGATTTCGATGTTGATCTTGAGAAAGGAATCATAGATTGCGACAATGTTTATACAAAATCACCGGAGAAGCCGATGTCTCCTGATAACAAACCGGTAATAACCGGAGAAGAAAGTGTTGGTTCGTTAGAGAATGATACAAGTCCGGTTCAATGTGGAATCAATAAACCGGGATGGGGGAGAAGCGATCGGAAGGAGAAACGGAAGAAATCTGCGTCGAAGCCTCCTCGACCGCCGCGTGGACCGTCGCTAGACGCGGCGGATCAGAAACTTATTAGAGAGATCGCTGAATTGGCGATGTTGAAACGCGCGAGAATCGAACGTATGAGAGCTTTGAAGAAATCAAGAGCGGCTAAAGCTGCGTCTGCCGCTTCTTCTTTAGGCAATGTATTGGCCACTCTTTTCACCGCTATTTTCTTCTTTGTCCTCGTTTTCCAAGGATTGTCACCGAGAGCAGCCGGTAGCTCCGGGAAATCTCACTTAGTAGTCGCCGGCAAAGCCAATGGTGGTTTTGTTTCGGTTCAATATGCGGGAAATCCGTCGGCGAGCGAACCGGATGGAGGTTATACCGGACCAGTTTTAGCACAGAGACCAAATTTACTAAAACCGGTGTCCGGTTTGGAGAATGAAAAGAAGAGTTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.31

Weight (kDa)

9.67

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 362
AccII CGCG 4 cut(s) 250, 269, 321, 323
AciI CCGC 8 cut(s) 245, 248, 269, 272, 362, 381, 420, 542
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 607
AfiI CCNNNNNNNGG 4 cut(s) 188, 251, 572, 626
AgeI ACCGGT 2 cut(s) 106, 619
AgsI TTSAA 4 cut(s) 164, 316, 349, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 344, 371, 477
AluI AGCT 3 cut(s) 344, 371, 477
Alw26I GTCTC 3 cut(s) 17, 96, 595
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 371, 467
ApoI RAATTY 1 cut(s) 607
AsiGI ACCGGT 2 cut(s) 106, 619
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 254, 584
AsuC2I CCSGG 2 cut(s) 183, 481
AsuHPI GGTGA 3 cut(s) 66, 409, 450
AvaII GGWCC 2 cut(s) 254, 584
BalI TGGCCA 1 cut(s) 407
BbvI GCAGC 2 cut(s) 358, 479
BccI CCATC 2 cut(s) 180, 563
BcnI CCSGG 2 cut(s) 183, 481
BcoDI GTCTC 3 cut(s) 17, 96, 595
BfaI CTAG 1 cut(s) 263
BisI GCNGC 6 cut(s) 248, 270, 363, 372, 381, 468
BlsI GCNGC 6 cut(s) 249, 271, 364, 373, 382, 469
Bme1390I CCNGG 2 cut(s) 183, 481
Bme18I GGWCC 2 cut(s) 254, 584
BmgT120I GGNCC 2 cut(s) 254, 584
BmrFI CCNGG 2 cut(s) 183, 481
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 183, 481
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 8 cut(s) 76, 106, 116, 157, 565, 581, 619, 626
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 251, 572, 626
Bse118I RCCGGY 4 cut(s) 106, 470, 503, 619
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 191, 574
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 4 cut(s) 188, 251, 572, 626
BseMI GCAATG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 358, 479
Bsh1236I CGCG 4 cut(s) 250, 269, 321, 323
Bsh1285I CGRYCG 2 cut(s) 202, 245
BshFI GGCC 1 cut(s) 407
BshTI ACCGGT 2 cut(s) 106, 619
BsiEI CGRYCG 2 cut(s) 202, 245
BslI CCNNNNNNNGG 4 cut(s) 188, 251, 572, 626
BsmAI GTCTC 3 cut(s) 17, 96, 595
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 595
Bsp143I GATC 4 cut(s) 28, 199, 274, 294
BspACI CCGC 8 cut(s) 245, 248, 269, 272, 362, 381, 420, 542
BspANI GGCC 1 cut(s) 407
BspFNI CGCG 4 cut(s) 250, 269, 321, 323
BspPI GGATC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 595
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 403
BsrFI RCCGGY 4 cut(s) 106, 470, 503, 619
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 4 cut(s) 106, 470, 503, 619
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 4 cut(s) 28, 199, 274, 294
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 258, 657
Bst6I CTCTTC 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 505, 559
BstDEI CTNAG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 191, 574
BstFNI CGCG 4 cut(s) 250, 269, 321, 323
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 4 cut(s) 31, 202, 277, 297
BstMAI GTCTC 3 cut(s) 17, 96, 595
BstMBI GATC 4 cut(s) 28, 199, 274, 294
BstMCI CGRYCG 2 cut(s) 202, 245
BstMWI GCNNNNNNNGC 6 cut(s) 305, 368, 371, 377, 380, 509
BstSCI CCNGG 2 cut(s) 181, 479
BstUI CGCG 4 cut(s) 250, 269, 321, 323
BstV1I GCAGC 2 cut(s) 358, 479
BsuRI GGCC 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 191, 574
Cac8I GCNNGC 2 cut(s) 505, 559
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 4 cut(s) 106, 470, 503, 619
Cfr13I GGNCC 2 cut(s) 254, 584
CseI GACGC 3 cut(s) 216, 275, 363
CspAI ACCGGT 2 cut(s) 106, 619
CviJI RGCY 9 cut(s) 85, 235, 344, 365, 371, 407, 470, 477, 512
CviKI_1 RGCY 9 cut(s) 85, 235, 344, 365, 371, 407, 470, 477, 512
DdeI CTNAG 1 cut(s) 493
DpnI GATC 4 cut(s) 30, 201, 276, 296
DpnII GATC 4 cut(s) 28, 199, 274, 294
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 254, 584
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaiI YATR 5 cut(s) 47, 66, 338, 540, 579
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 6 cut(s) 248, 270, 363, 372, 381, 468
FokI GGATG 2 cut(s) 198, 581
Fsp4HI GCNGC 6 cut(s) 248, 270, 363, 372, 381, 468
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 322
GluI GCNGC 6 cut(s) 248, 270, 363, 372, 381, 468
HaeIII GGCC 1 cut(s) 407
HgaI GACGC 3 cut(s) 216, 275, 363
HhaI GCGC 1 cut(s) 323
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 4 cut(s) 10, 42, 171, 327
HphI GGTGA 3 cut(s) 66, 409, 450
Hpy166II GTNNAC 2 cut(s) 254, 653
Hpy188I TCNGA 2 cut(s) 204, 279
Hpy188III TCNNGA 4 cut(s) 14, 32, 95, 357
Hpy8I GTNNAC 2 cut(s) 254, 653
Hpy99I CGWCG 3 cut(s) 232, 262, 556
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 258, 657
HpyCH4IV ACGT 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 6 cut(s) 305, 368, 371, 377, 380, 509
HpyF3I CTNAG 1 cut(s) 493
HpySE526I ACGT 1 cut(s) 334
HspAI GCGC 1 cut(s) 321
KroI GCCGGC 1 cut(s) 503
KroNI GCCGGC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 28, 199, 274, 294
LmnI GCTCC 1 cut(s) 482
Lsp1109I GCAGC 2 cut(s) 358, 479
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 456
MalI GATC 4 cut(s) 30, 201, 276, 296
MbiI CCGCTC 1 cut(s) 362
MboI GATC 4 cut(s) 28, 199, 274, 294
MboII GAAGA 6 cut(s) 134, 229, 361, 378, 421, 658
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 2 cut(s) 302, 607
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 4 cut(s) 246, 249, 449, 566
Mox20I TGGCCA 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 503
MscI TGGCCA 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 183, 481
MvnI CGCG 4 cut(s) 250, 269, 321, 323
MwoI GCNNNNNNNGC 6 cut(s) 305, 368, 371, 377, 380, 509
NaeI GCCGGC 1 cut(s) 505
NciI CCSGG 2 cut(s) 183, 481
NdeII GATC 4 cut(s) 28, 199, 274, 294
NgoMIV GCCGGC 1 cut(s) 503
NmuCI GTSAC 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 42, 171, 327
PfoI TCCNGGA 1 cut(s) 479
PinAI ACCGGT 2 cut(s) 106, 619
PkrI GCNGC 6 cut(s) 249, 271, 364, 373, 382, 469
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 254, 584
PvuI CGATCG 1 cut(s) 202
SatI GCNGC 6 cut(s) 248, 270, 363, 372, 381, 468
Sau3AI GATC 4 cut(s) 28, 199, 274, 294
Sau96I GGNCC 2 cut(s) 254, 584
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 183, 481
SetI ASST 5 cut(s) 337, 346, 373, 479, 577
SinI GGWCC 2 cut(s) 254, 584
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 302, 607
SsiI CCGC 8 cut(s) 245, 248, 269, 272, 362, 381, 420, 542
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 181, 479
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 258, 657
TaiI ACGT 1 cut(s) 337
TaqI TCGA 5 cut(s) 15, 21, 230, 241, 330
TasI AATT 2 cut(s) 302, 607
TauI GCSGC 4 cut(s) 250, 272, 365, 383
TfiI GAWTC 3 cut(s) 42, 171, 327
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 2 cut(s) 371, 467
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 1 cut(s) 654
TspGWI ACGGA 2 cut(s) 229, 540
VpaK11BI GGWCC 2 cut(s) 254, 584
XapI RAATTY 1 cut(s) 607
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.