Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

35998937 .. 36001077

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGACCCCTCGCTCACTCTACCGTACCCTCCTCCGCCCCTTCTCCACAACCACTAAACCCTCTCGCCATTTCTCCGATCCCAAGAAGGAGGAGGCGAAGCTAGCGGAGCTGCGCGGGTACTACAATCTACTGGTGCTGCGCAGAGACTACGTGAAGCATGTGAAGGAGGTCCGCGTCAAGTCCATCATGGAGGTGGAGCTCATGAGGCTCGAGATGCTCCGCGTCGACGAGGCCCGTAAGGAAGCCCAGAATGAGCAGACCAGGAGGCTCAAGGCCGAGGCCGTCAGGGTTCGCGCTCAAAAGCGGGAGGCTGCCAAGCACGAGACGGAACAAGCACTATTAAAACAGAAAGCAGAAAAGCTTGAGAATTTGAAGAAGAAAGAAATGCTTAGGGAAGAAAAGAAAAGAGAGAAGAATGGACTGCTGCGGCAGAGTTCCTCTGGGATCAAGGAACCACAACTGGAAAAGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.9

Weight (kDa)

10.15

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	4 cut(s)	117, 177, 225, 297
AciI	CCGC	7 cut(s)	37, 107, 117, 175, 223, 307, 430
AclWI	GGATC	2 cut(s)	74, 455
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	28, 122
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	4 cut(s)	103, 112, 202, 364
AluI	AGCT	4 cut(s)	103, 112, 202, 364
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	141, 320
AlwI	GGATC	2 cut(s)	74, 455
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	234, 276, 282
ApeKI	GCWGC	4 cut(s)	112, 139, 314, 427
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	3 cut(s)	117, 144, 299
AspS9I	GGNCC	2 cut(s)	172, 235
AsuNHI	GCTAGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	99, 126, 301, 414
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	141, 320
BfaI	CTAG	2 cut(s)	104, 478
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	5 cut(s)	113, 140, 315, 428, 431
BlsI	GCNGC	5 cut(s)	114, 141, 316, 429, 432
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	172, 235
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	207
BmtI	GCTAGC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	257, 386
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	138, 468
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	138, 468
BseRI	GAGGAG	2 cut(s)	23, 107
BseXI	GCAGC	4 cut(s)	99, 126, 301, 414
Bsh1236I	CGCG	4 cut(s)	117, 177, 225, 297
BshFI	GGCC	3 cut(s)	236, 278, 284
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	141, 320
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	236, 278, 284
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	79, 447, 474
BspACI	CCGC	7 cut(s)	37, 107, 117, 175, 223, 307, 430
BspANI	GGCC	3 cut(s)	236, 278, 284
BspFNI	CGCG	4 cut(s)	117, 177, 225, 297
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	456
BspOI	GCTAGC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	74, 455
BsrI	ACTGG	2 cut(s)	138, 468
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	79, 447, 474
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	392
BstFNI	CGCG	4 cut(s)	117, 177, 225, 297
BstHHI	GCGC	3 cut(s)	117, 144, 299
BstKTI	GATC	3 cut(s)	82, 450, 477
BstMAI	GTCTC	2 cut(s)	141, 320
BstMBI	GATC	3 cut(s)	79, 447, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 109, 208, 217
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	263
BstUI	CGCG	4 cut(s)	117, 177, 225, 297
BstV1I	GCAGC	4 cut(s)	99, 126, 301, 414
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	236, 278, 284
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	3 cut(s)	117, 144, 299
Cfr13I	GGNCC	2 cut(s)	172, 235
CseI	GACGC	2 cut(s)	166, 214
Csp6I	GTAC	2 cut(s)	27, 121
CviAII	CATG	3 cut(s)	161, 190, 205
CviQI	GTAC	2 cut(s)	27, 121
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	81, 449, 476
DpnII	GATC	3 cut(s)	79, 447, 474
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	3 cut(s)	164, 193, 208
FaiI	YATR	3 cut(s)	162, 191, 206
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	3 cut(s)	160, 189, 204
FauI	CCCGC	2 cut(s)	110, 300
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	113, 140, 315, 428, 431
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	5 cut(s)	113, 140, 315, 428, 431
FspBI	CTAG	2 cut(s)	104, 478
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	3 cut(s)	116, 143, 298
GluI	GCNGC	5 cut(s)	113, 140, 315, 428, 431
HaeIII	GGCC	3 cut(s)	236, 278, 284
HgaI	GACGC	2 cut(s)	166, 214
HhaI	GCGC	3 cut(s)	117, 144, 299
Hin1II	CATG	3 cut(s)	164, 193, 208
Hin6I	GCGC	3 cut(s)	115, 142, 297
HinP1I	GCGC	3 cut(s)	115, 142, 297
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	205, 214
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	3 cut(s)	52, 82, 160
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 109, 208, 217
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	164, 193, 208
HspAI	GCGC	3 cut(s)	115, 142, 297
Kzo9I	GATC	3 cut(s)	79, 447, 474
LmnI	GCTCC	3 cut(s)	109, 199, 225
LpnPI	CCDG	7 cut(s)	119, 250, 263, 274, 277, 429, 449
Lsp1109I	GCAGC	4 cut(s)	99, 126, 301, 414
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	104, 478
MaeII	ACGT	1 cut(s)	153
MalI	GATC	3 cut(s)	81, 449, 476
MboI	GATC	3 cut(s)	79, 447, 474
MboII	GAAGA	4 cut(s)	388, 391, 410, 427
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	370
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MvnI	CGCG	4 cut(s)	117, 177, 225, 297
MwoI	GCNNNNNNNGC	4 cut(s)	104, 109, 208, 217
NdeII	GATC	3 cut(s)	79, 447, 474
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	164, 193, 208
NlaIV	GGNNCC	1 cut(s)	456
NmeAIII	GCCGAG	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	114, 141, 316, 429, 432
Ppu21I	YACGTR	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	172, 235
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	2 cut(s)	28, 122
RsaNI	GTAC	2 cut(s)	27, 121
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	113, 140, 315, 428, 431
Sau3AI	GATC	3 cut(s)	79, 447, 474
Sau96I	GGNCC	2 cut(s)	172, 235
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	7 cut(s)	105, 114, 156, 174, 198, 204, 366
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	212
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	212, 272, 365
SmoI	CTYRAG	3 cut(s)	212, 272, 365
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	7 cut(s)	37, 107, 117, 175, 223, 307, 430
SspMI	CTAG	2 cut(s)	104, 478
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	213, 228
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	4 cut(s)	112, 139, 314, 427
TspGWI	ACGGA	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	104, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.