Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

9042512 .. 9046170

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATCGTAAGAGTCCGAGGGAAAAAGACTCTGAAGTTGATCTTGAAAGTGGGGTGGTAGTTAGTGAAGAAGATTCAAGCGACAGCCCTGTTTCGAGTGCTAAGAAGCAGGCAAAGACATTAATTTCTAAGGTTTGTGGTGGACTTTTGGATGGATCAGTTAAGGTTGAAGAGAGGGTCAGTTTGTGTGGCAATGGGTCCAATTCCAATGGAGTCTCCCCCGAGAATTTGAAAGTGGCAACAAACAAGATGTTGCAAGGAAATGAAGGTACAGATCACGTAGAGAAGACACGGGTGAAGGATAAGCGTAAGAAGATGACCAATAAAAAACCTCCTAAACCTCCCAGACCTCCAAGAGGTCCATCATTGGATGCAGCAGACCAGAAGTTGATCAAGGAACTCTCTGAGATTGCCATGTGGAAACGTGCAAGGATTGATCGGATGAAAGCCTTGAAGAAAATGAAAGCTGCTAAGGCATCATCTTCCAATAGCAGCATATTTGCCATGGTGTTCACCATTCTTTTCTGTCTTGTACTAATCTTTCAAGGAATTTCTTCTAGAAGAAGCTCACCTGTAAGCTTCGAGGGATCTCCTGTGTCTGGAGGAGGAATGGAGGGCAGTTTGATATCCGTTCAGTACTACCCAAATCTGTCATCAACTGCCCCAAATGGGCCTGGTTCTGAGTCCCCCAATATCGTAGAGCAGGTTGCTGGTTCAGATCCGCGGGAGAAGCTGAAAAGATGGGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

26.93

Weight (kDa)

9.62

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccII	CGCG	1 cut(s)	724
AciI	CCGC	2 cut(s)	722, 724
AclWI	GGATC	4 cut(s)	12, 163, 595, 713
AcsI	RAATTY	2 cut(s)	226, 549
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	271, 534, 638
AfiI	CCNNNNNNNGG	3 cut(s)	356, 599, 669
AgsI	TTSAA	6 cut(s)	47, 78, 170, 232, 454, 545
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	4 cut(s)	467, 567, 579, 733
AluI	AGCT	4 cut(s)	467, 567, 579, 733
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	4 cut(s)	12, 163, 595, 713
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	3 cut(s)	374, 467, 492
ApoI	RAATTY	2 cut(s)	226, 549
AseI	ATTAAT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	198, 359, 671
AsuHPI	GGTGA	3 cut(s)	307, 505, 561
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	198, 359
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	386, 454, 504
BccI	CCATC	3 cut(s)	146, 370, 735
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	375, 468, 493
BlsI	GCNGC	3 cut(s)	376, 469, 494
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	198, 359
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	198, 359, 671
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	361, 485
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	17, 504, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 599, 669
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	17, 504, 722
BseGI	GGATG	3 cut(s)	157, 376, 447
BseLI	CCNNNNNNNGG	3 cut(s)	356, 599, 669
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	396, 672
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	3 cut(s)	386, 454, 504
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	3 cut(s)	356, 599, 669
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	722, 724
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	2 cut(s)	397, 673
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	4 cut(s)	12, 163, 595, 713
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	17, 504, 722
BssMI	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	5 cut(s)	102, 129, 405, 471, 681
BstDSI	CCRYGG	2 cut(s)	504, 722
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	157, 376, 447
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	8 cut(s)	7, 43, 158, 277, 393, 439, 590, 721
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 730
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	386, 454, 504
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	587, 718
BstYI	RGATCY	2 cut(s)	587, 718
BsuRI	GGCC	1 cut(s)	673
BtgI	CCRYGG	2 cut(s)	504, 722
BtsCI	GGATG	3 cut(s)	157, 376, 447
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	198, 359, 671
Cfr42I	CCGCGG	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	270, 533, 637
CviAII	CATG	2 cut(s)	415, 505
CviJI	RGCY	7 cut(s)	87, 449, 467, 567, 579, 673, 733
CviKI_1	RGCY	7 cut(s)	87, 449, 467, 567, 579, 673, 733
CviQI	GTAC	3 cut(s)	270, 533, 637
DdeI	CTNAG	5 cut(s)	102, 129, 405, 471, 681
DpnI	GATC	8 cut(s)	6, 42, 157, 276, 392, 438, 589, 720
DpnII	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	2 cut(s)	198, 359
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	418, 508
FaiI	YATR	3 cut(s)	416, 497, 506
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	2 cut(s)	414, 504
FauI	CCCGC	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	375, 468, 493
FokI	GGATG	3 cut(s)	164, 383, 454
Fsp4HI	GCNGC	3 cut(s)	375, 468, 493
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	3 cut(s)	375, 468, 493
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	673
Hin1II	CATG	2 cut(s)	418, 508
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	5 cut(s)	13, 29, 74, 213, 683
HphI	GGTGA	3 cut(s)	307, 505, 561
Hpy166II	GTNNAC	2 cut(s)	143, 513
Hpy188I	TCNGA	6 cut(s)	18, 34, 406, 441, 682, 718
Hpy188III	TCNNGA	3 cut(s)	44, 558, 600
Hpy8I	GTNNAC	2 cut(s)	143, 513
HpyAV	CCTTC	2 cut(s)	260, 292
HpyCH4IV	ACGT	2 cut(s)	279, 424
HpyCH4V	TGCA	3 cut(s)	256, 374, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 730
HpyF3I	CTNAG	5 cut(s)	102, 129, 405, 471, 681
HpySE526I	ACGT	2 cut(s)	279, 424
Hsp92II	CATG	2 cut(s)	418, 508
Ksp22I	TGATCA	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	725
Kzo9I	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
Lsp1109I	GCAGC	3 cut(s)	386, 454, 504
LweI	GCATC	2 cut(s)	361, 485
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	279, 424
MalI	GATC	8 cut(s)	6, 42, 157, 276, 392, 438, 589, 720
MboI	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
MboII	GAAGA	9 cut(s)	80, 83, 182, 298, 325, 466, 474, 546, 573
MflI	RGATCY	2 cut(s)	587, 718
MluCI	AATT	4 cut(s)	123, 202, 226, 549
MlyI	GAGTC	4 cut(s)	22, 23, 222, 692
MroXI	GAANNNNTTC	1 cut(s)	553
MseI	TTAA	2 cut(s)	122, 162
MspA1I	CMGCKG	1 cut(s)	724
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	473, 730
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
NlaIII	CATG	2 cut(s)	418, 508
NlaIV	GGNNCC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	376, 469, 494
PleI	GAGTC	4 cut(s)	21, 23, 221, 691
PpsI	GAGTC	4 cut(s)	21, 23, 221, 691
Ppu21I	YACGTR	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	198, 359, 671
PsuI	RGATCY	2 cut(s)	587, 718
RsaI	GTAC	3 cut(s)	271, 534, 638
RsaNI	GTAC	3 cut(s)	270, 533, 637
SacII	CCGCGG	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	122, 162
SatI	GCNGC	3 cut(s)	375, 468, 493
Sau3AI	GATC	8 cut(s)	4, 40, 155, 274, 390, 436, 587, 718
Sau96I	GGNCC	3 cut(s)	198, 359, 671
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	4 cut(s)	22, 23, 222, 692
ScrFI	CCNGG	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	361, 485
Sfr303I	CCGCGG	1 cut(s)	725
SgrBI	CCGCGG	1 cut(s)	725
SinI	GGWCC	2 cut(s)	198, 359
Sse9I	AATT	4 cut(s)	123, 202, 226, 549
SsiI	CCGC	2 cut(s)	722, 724
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	504
TaiI	ACGT	2 cut(s)	282, 427
TaqI	TCGA	2 cut(s)	95, 582
TasI	AATT	4 cut(s)	123, 202, 226, 549
TatI	WGTACW	2 cut(s)	532, 636
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	122, 162
Tru9I	TTAA	2 cut(s)	122, 162
TseI	GCWGC	3 cut(s)	374, 467, 492
TspDTI	ATGAA	3 cut(s)	279, 458, 476
TspGWI	ACGGA	1 cut(s)	619
VpaK11BI	GGWCC	2 cut(s)	198, 359
VspI	ATTAAT	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	226, 549
XbaI	TCTAGA	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	553
XspI	CTAG	1 cut(s)	558
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.