Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Forward (+)

58024970 .. 58029721

Gene Structure 4752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATCATAAGGGTCTGAGAGATAAAGATTTTGAAATTGATCTTGAGAGCGGGGTGGTAGTTAGTGAAGAGGATTCAAGTGATAGCTCTGTTTCGAGTGTCAAAAAACAGGCAAAGACGCTGCTAGCAAAGGTTTATGGCGGATTTTCGGATGGATCAGTTAATGCTGAAGAGAGGGTTGGTTTGTGTGGCAATGGTTTCAACTCCAATGGGGTCTGCCCCGAGAATTTGAAGTTGGCAACAAACAAGACACTGGAGGGAAATGGTGGTATGGATCGTGAAGAGAAGACTCGGCCGAAAGATAAGCGGAAAAAAACGAGCAATAAAAAGGCCCCTAAACCTCCCAGACCTCCAAGAGGCCCGTCATTGGATGCCGCTGACCAGAAGCTAATCAAGGAACTCTCTGAGATTGCAATGTGGAAACGTGCAAGGGTTGAGAGGATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCATCATCCAATACCAATATATATGCGATGGTGTTCACGGTTCTCTTTTGTGTAGTGCTACTCTTCCAAGGAATTTCATCTAGCAGAAGCTCAACTGTAGGCTTTGAGGGATCTCCTTTGTCTGCAGGAAGAACGGAGGGCAGTTTGATCTCAATTCAGTTCTACCCAAATCCGTCATCAACTGCCCCGAATGGACCTGGTTCCGAGTCTCCCAAGTATGTTAAATTCATCTTAGCTTCAAATATGAAATATCCTGTTAGAAATTTCTTTTATTTGTCTATTACATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

27.83

Weight (kDa)

9.61

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	4 cut(s)	51, 141, 307, 375
AclWI	GGATC	4 cut(s)	12, 163, 282, 595
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	4 cut(s)	226, 549, 701, 739
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	356, 367
AgsI	TTSAA	6 cut(s)	35, 78, 202, 232, 454, 717
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 218, 250
AluBI	AGCT	5 cut(s)	87, 388, 467, 567, 713
AluI	AGCT	5 cut(s)	87, 388, 467, 567, 713
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	4 cut(s)	12, 163, 282, 595
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	3 cut(s)	293, 330, 358
ApeKI	GCWGC	2 cut(s)	121, 467
ApoI	RAATTY	4 cut(s)	226, 549, 701, 739
AspS9I	GGNCC	3 cut(s)	331, 359, 671
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	108, 454
BccI	CCATC	2 cut(s)	146, 499
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	2 cut(s)	125, 558
BfmI	CTRYAG	2 cut(s)	573, 600
BisI	GCNGC	3 cut(s)	122, 375, 468
BlsI	GCNGC	3 cut(s)	123, 376, 469
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	331, 359, 671
BmiI	GGNNCC	2 cut(s)	333, 679
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	361, 485
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 367
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	199, 420
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	4 cut(s)	157, 376, 447, 482
BseLI	CCNNNNNNNGG	2 cut(s)	356, 367
BseMI	GCAATG	2 cut(s)	199, 420
BseMII	CTCAG	2 cut(s)	8, 396
BseNI	ACTGG	1 cut(s)	258
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	108, 454
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	295, 332, 360
BsiEI	CGRYCG	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	356, 367
BsmAI	GTCTC	1 cut(s)	690
BsnI	GGCC	3 cut(s)	295, 332, 360
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
BspACI	CCGC	4 cut(s)	51, 141, 307, 375
BspANI	GGCC	3 cut(s)	295, 332, 360
BspCNI	CTCAG	2 cut(s)	9, 397
BspLI	GGNNCC	2 cut(s)	333, 679
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	12, 163, 282, 595
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	2 cut(s)	199, 420
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	517, 574
Bst6I	CTCTTC	4 cut(s)	63, 165, 276, 545
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	17, 405, 471, 709
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	157, 376, 447, 482
BstKTI	GATC	6 cut(s)	7, 43, 158, 277, 590, 627
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	2 cut(s)	573, 600
BstV1I	GCAGC	2 cut(s)	108, 454
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BstZI	CGGCCG	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	295, 332, 360
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	4 cut(s)	157, 376, 447, 482
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	331, 359, 671
CseI	GACGC	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	673
DdeI	CTNAG	4 cut(s)	17, 405, 471, 709
DpnI	GATC	6 cut(s)	6, 42, 157, 276, 589, 626
DpnII	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Eam1104I	CTCTTC	4 cut(s)	63, 165, 276, 545
EarI	CTCTTC	4 cut(s)	63, 165, 276, 545
EciI	GGCGGA	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	671
Eco52I	CGGCCG	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaiI	YATR	9 cut(s)	9, 138, 272, 497, 499, 501, 696, 722, 769
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	122, 375, 468
FokI	GGATG	4 cut(s)	164, 383, 454, 469
Fsp4HI	GCNGC	3 cut(s)	122, 375, 468
FspBI	CTAG	2 cut(s)	125, 558
GluI	GCNGC	3 cut(s)	122, 375, 468
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	295, 332, 360
HgaI	GACGC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	74, 289, 683
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	4 cut(s)	18, 151, 406, 682
Hpy188III	TCNNGA	2 cut(s)	44, 278
Hpy8I	GTNNAC	1 cut(s)	513
HpyCH4III	ACNGT	2 cut(s)	517, 574
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	413, 428, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	4 cut(s)	17, 405, 471, 709
HpySE526I	ACGT	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
LpnPI	CCDG	8 cut(s)	95, 239, 358, 395, 588, 660, 687, 744
Lsp1109I	GCAGC	2 cut(s)	108, 454
LweI	GCATC	2 cut(s)	361, 485
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	2 cut(s)	125, 558
MaeII	ACGT	1 cut(s)	424
MalI	GATC	6 cut(s)	6, 42, 157, 276, 589, 626
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
MboII	GAAGA	9 cut(s)	80, 182, 293, 298, 466, 469, 532, 618, 756
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	6 cut(s)	36, 226, 549, 630, 701, 739
MlyI	GAGTC	2 cut(s)	283, 692
MnlI	CCTC	9 cut(s)	64, 168, 250, 350, 351, 360, 432, 577, 607
MseI	TTAA	2 cut(s)	162, 699
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
NheI	GCTAGC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	333, 679
NmeAIII	GCCGAG	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	123, 376, 469
PleI	GAGTC	2 cut(s)	283, 691
PpsI	GAGTC	2 cut(s)	283, 691
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	333, 679
PspPI	GGNCC	3 cut(s)	331, 359, 671
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	162, 699
SatI	GCNGC	3 cut(s)	122, 375, 468
Sau3AI	GATC	6 cut(s)	4, 40, 155, 274, 587, 624
Sau96I	GGNCC	3 cut(s)	331, 359, 671
SchI	GAGTC	2 cut(s)	283, 692
ScrFI	CCNGG	1 cut(s)	675
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	361, 485
SfcI	CTRYAG	2 cut(s)	573, 600
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	6 cut(s)	36, 226, 549, 630, 701, 739
SsiI	CCGC	4 cut(s)	51, 141, 307, 375
SspMI	CTAG	2 cut(s)	125, 558
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	517, 574
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	95
TasI	AATT	6 cut(s)	36, 226, 549, 630, 701, 739
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	162, 699
Tru9I	TTAA	2 cut(s)	162, 699
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	121, 467
TspDTI	ATGAA	6 cut(s)	458, 476, 543, 694, 737, 756
TspGWI	ACGGA	2 cut(s)	626, 639
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	671
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	4 cut(s)	226, 549, 701, 739
XspI	CTAG	2 cut(s)	125, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.