Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

15907605 .. 15911442

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCGGTTGCTCGAATCGTCGTCAATAGGGTTCTTTCTCCGCATCGGATCTGGGGTTTCTTCGCTTCCGTTTGAAGGAGTGAAGGGGGAAAGAAAGGAGGGAGCTTGTTGTTTAGTGAACCATTATTGGTTGGGGGAGGCGTGCAAAGAGGTTGTTTTGTGTGATGGGTTGAATTGGAAGATTCAAATTTGGGTGGAACTATTGTGGCTTTGTTCATTTGGAGCCTGGAGAGGGGATTGGAGATTGACTTGGGTTTGGTTGGTTGTTATGGATCATAAGGGTCTGAGAGATAAAGATTTTGAAATTGATCTTGAGAGCGGGGTGGTAGTTAGTGAAGAGGATTCAAGTGATAGCTCTGTTTCGAGTGTCAAAAAACAGGCAAAGACGCTGCTAGCAAAGGTTTATGTCGGATTTTCGGATGGATCAGTTAATGCTGAAGAGAGGGTTGGTTTGTGTGGCAATGGTTTCAACTCCAATGGGGTCTGCCCCGAGAATTTGAAGTTGGCAACAAACAAGACACTGGAGGGAAATGGTGGTATGGATCGTGAAGAGAAGACTCGGCCGAAAGATAAGCGGAAAAAAACGAGCAATAAAAAGGCCCCTAAACCTCCCAGACCTCCAAGAGGCCCGTCATTGGATGCCGCTGACCAGAAGCTAATCAAGGAACTCTCTGAGATTGCAATGTGGAAACGTGCAAGGGTTGAGAGGATGAAGGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCATCATCCAATACCAATATATATGCCATGGTGTTCACGGTTCTCTTTTGTGTAGTGCTACTCTTCCAAGGAATTTCATCTAGCAGAAGCTCAACTGGAGGCTTTGAGGGATCTCCTTTGTCTGCAGGAAGAACGGAGGGCAGTTTGATCTCAATTCAGTTCTACCCAAATCCGTCATCAACTGCCCCAAATGGACCTGGTTCCGAGTCTCCCAATATGGTAGAGCAGGTTGCTGGTTCAGATCAGCAGGAGAAGCTGCAAAGATGGGCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.31

Weight (kDa)

9.09

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	961
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	5 cut(s)	4, 40, 318, 574, 642
AclWI	GGATC	5 cut(s)	55, 279, 430, 549, 862
AcoI	YGGCCR	1 cut(s)	560
AcsI	RAATTY	3 cut(s)	186, 493, 816
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	4 cut(s)	74, 231, 623, 634
AgsI	TTSAA	8 cut(s)	74, 172, 185, 302, 345, 469, 499, 721
AjnI	CCWGG	2 cut(s)	224, 940
AjuI	GAANNNNNNNTTGG	4 cut(s)	429, 461, 485, 517
AluBI	AGCT	6 cut(s)	104, 354, 655, 734, 834, 1000
AluI	AGCT	6 cut(s)	104, 354, 655, 734, 834, 1000
Alw26I	GTCTC	1 cut(s)	957
AlwI	GGATC	5 cut(s)	55, 279, 430, 549, 862
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	560, 597, 625, 714
ApeKI	GCWGC	3 cut(s)	388, 734, 1000
ApoI	RAATTY	3 cut(s)	186, 493, 816
AspS9I	GGNCC	3 cut(s)	598, 626, 938
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	938
BaeGI	GKGCMC	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	375, 721, 987
BccI	CCATC	3 cut(s)	158, 413, 1002
BciT130I	CCWGG	2 cut(s)	226, 942
BcoDI	GTCTC	1 cut(s)	957
BfaI	CTAG	2 cut(s)	392, 825
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	961
BisI	GCNGC	4 cut(s)	389, 642, 735, 1001
BlsI	GCNGC	4 cut(s)	390, 643, 736, 1002
Bme1390I	CCNGG	2 cut(s)	226, 942
Bme18I	GGWCC	1 cut(s)	938
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	598, 626, 938
BmiI	GGNNCC	3 cut(s)	223, 600, 946
BmrFI	CCNGG	2 cut(s)	226, 942
BmsI	GCATC	3 cut(s)	51, 628, 752
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	560
BpmI	CTGGAG	3 cut(s)	247, 542, 861
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	771, 811
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 231, 623, 634
Bse1I	ACTGG	2 cut(s)	525, 844
Bse3DI	GCAATG	2 cut(s)	466, 687
BseBI	CCWGG	2 cut(s)	226, 942
BseDI	CCNNGG	2 cut(s)	771, 811
BseGI	GGATG	4 cut(s)	424, 643, 714, 749
BseLI	CCNNNNNNNGG	4 cut(s)	74, 231, 623, 634
BseMI	GCAATG	2 cut(s)	466, 687
BseMII	CTCAG	2 cut(s)	275, 663
BseNI	ACTGG	2 cut(s)	525, 844
BseSI	GKGCMC	1 cut(s)	1015
BseX3I	CGGCCG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	375, 721, 987
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	4 cut(s)	562, 599, 627, 716
BsiEI	CGRYCG	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	488
BslI	CCNNNNNNNGG	4 cut(s)	74, 231, 623, 634
BsmAI	GTCTC	1 cut(s)	957
BsnI	GGCC	4 cut(s)	562, 599, 627, 716
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp143I	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	5 cut(s)	4, 40, 318, 574, 642
BspANI	GGCC	4 cut(s)	562, 599, 627, 716
BspCNI	CTCAG	2 cut(s)	276, 664
BspLI	GGNNCC	3 cut(s)	223, 600, 946
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	961
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	5 cut(s)	55, 279, 430, 549, 862
BsrBI	CCGCTC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	466, 687
BsrI	ACTGG	2 cut(s)	525, 844
BssECI	CCNNGG	2 cut(s)	771, 811
BssMI	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
BssT1I	CCWWGG	2 cut(s)	771, 811
Bst2UI	CCWGG	2 cut(s)	226, 942
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	4 cut(s)	330, 432, 543, 812
BstC8I	GCNNGC	2 cut(s)	142, 393
BstDEI	CTNAG	3 cut(s)	284, 672, 738
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	424, 643, 714, 749
BstKTI	GATC	8 cut(s)	50, 274, 310, 425, 544, 857, 894, 988
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 997
BstNI	CCWGG	2 cut(s)	226, 942
BstSCI	CCNGG	2 cut(s)	224, 940
BstSFI	CTRYAG	1 cut(s)	867
BstSLI	GKGCMC	1 cut(s)	1015
BstV1I	GCAGC	3 cut(s)	375, 721, 987
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	47, 854
BstYI	RGATCY	2 cut(s)	47, 854
BstZI	CGGCCG	1 cut(s)	560
BsuRI	GGCC	4 cut(s)	562, 599, 627, 716
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	4 cut(s)	424, 643, 714, 749
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	2 cut(s)	142, 393
Cfr13I	GGNCC	3 cut(s)	598, 626, 938
CseI	GACGC	1 cut(s)	394
CsiI	ACCWGGT	1 cut(s)	940
CviAII	CATG	1 cut(s)	772
DdeI	CTNAG	3 cut(s)	284, 672, 738
DpnI	GATC	8 cut(s)	49, 273, 309, 424, 543, 856, 893, 987
DpnII	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
EaeI	YGGCCR	1 cut(s)	560
EagI	CGGCCG	1 cut(s)	560
Eam1104I	CTCTTC	4 cut(s)	330, 432, 543, 812
EarI	CTCTTC	4 cut(s)	330, 432, 543, 812
EclXI	CGGCCG	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	771, 811
Eco147I	AGGCCT	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	938
Eco52I	CGGCCG	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	224, 940
EcoT14I	CCWWGG	2 cut(s)	771, 811
ErhI	CCWWGG	2 cut(s)	771, 811
FaeI	CATG	1 cut(s)	775
FaiI	YATR	9 cut(s)	269, 276, 405, 539, 764, 766, 768, 773, 962
FatI	CATG	1 cut(s)	771
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	4 cut(s)	389, 642, 735, 1001
FokI	GGATG	4 cut(s)	431, 650, 721, 736
Fsp4HI	GCNGC	4 cut(s)	389, 642, 735, 1001
FspBI	CTAG	2 cut(s)	392, 825
GluI	GCNGC	4 cut(s)	389, 642, 735, 1001
GsuI	CTGGAG	3 cut(s)	247, 542, 861
HaeIII	GGCC	4 cut(s)	562, 599, 627, 716
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	775
HinfI	GANTC	5 cut(s)	14, 181, 341, 556, 950
Hpy166II	GTNNAC	2 cut(s)	118, 780
Hpy188I	TCNGA	7 cut(s)	47, 285, 410, 418, 673, 949, 985
Hpy188III	TCNNGA	2 cut(s)	311, 545
Hpy8I	GTNNAC	2 cut(s)	118, 780
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	68, 76, 706
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	5 cut(s)	144, 680, 695, 869, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 997
HpyF3I	CTNAG	3 cut(s)	284, 672, 738
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	1 cut(s)	775
Kzo9I	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
LmnI	GCTCC	2 cut(s)	101, 221
Lsp1109I	GCAGC	3 cut(s)	375, 721, 987
LweI	GCATC	3 cut(s)	51, 628, 752
MabI	ACCWGGT	1 cut(s)	940
MaeI	CTAG	2 cut(s)	392, 825
MaeII	ACGT	1 cut(s)	691
MalI	GATC	8 cut(s)	49, 273, 309, 424, 543, 856, 893, 987
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
MflI	RGATCY	2 cut(s)	47, 854
MhlI	GDGCHC	1 cut(s)	1015
MluCI	AATT	6 cut(s)	172, 186, 303, 493, 816, 897
MlyI	GAGTC	2 cut(s)	550, 959
MmeI	TCCRAC	1 cut(s)	388
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	226, 942
MvaI	CCWGG	2 cut(s)	226, 942
MwoI	GCNNNNNNNGC	2 cut(s)	740, 997
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	3 cut(s)	223, 600, 946
NmeAIII	GCCGAG	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	716
PfeI	GAWTC	3 cut(s)	14, 181, 341
PkrI	GCNGC	4 cut(s)	390, 643, 736, 1002
PleI	GAGTC	2 cut(s)	550, 958
PpsI	GAGTC	2 cut(s)	550, 958
Psp6I	CCWGG	2 cut(s)	224, 940
PspGI	CCWGG	2 cut(s)	224, 940
PspN4I	GGNNCC	3 cut(s)	223, 600, 946
PspPI	GGNCC	3 cut(s)	598, 626, 938
PstI	CTGCAG	1 cut(s)	871
PsuI	RGATCY	2 cut(s)	47, 854
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	389, 642, 735, 1001
Sau3AI	GATC	8 cut(s)	47, 271, 307, 422, 541, 854, 891, 985
Sau96I	GGNCC	3 cut(s)	598, 626, 938
SchI	GAGTC	2 cut(s)	550, 959
ScrFI	CCNGG	2 cut(s)	226, 942
SduI	GDGCHC	1 cut(s)	1015
SexAI	ACCWGGT	1 cut(s)	940
SfaNI	GCATC	3 cut(s)	51, 628, 752
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	1 cut(s)	938
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	6 cut(s)	172, 186, 303, 493, 816, 897
SseBI	AGGCCT	1 cut(s)	716
SsiI	CCGC	5 cut(s)	4, 40, 318, 574, 642
SspMI	CTAG	2 cut(s)	392, 825
StuI	AGGCCT	1 cut(s)	716
StyD4I	CCNGG	2 cut(s)	224, 940
StyI	CCWWGG	2 cut(s)	771, 811
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	12, 362
TasI	AATT	6 cut(s)	172, 186, 303, 493, 816, 897
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	14, 181, 341
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	3 cut(s)	388, 734, 1000
TspDTI	ATGAA	4 cut(s)	204, 725, 743, 810
TspGWI	ACGGA	3 cut(s)	57, 893, 906
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	938
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	3 cut(s)	186, 493, 816
XspI	CTAG	2 cut(s)	392, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.