Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Forward (+)

48291312 .. 48294436

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATCATAAGGGTCTGAGAGATAAAGATTTTGAAATCGATCTTGAGAGCGGGGTGGTAGTTAGTGAAGAGGATTCAAGTGATAGCTCTGTTTCGAGTGTCAAAAAACAGGCAAAGACGCTGCTAGCAAAGGTTTATGGCGGATTTTCAGATGGATCAGTTAATGCTGAAGAGAGGGTTGGTTTGTGTGGCAATGGTTTCAACTCCAATGGGGTCTGCCCCGAGAATTTGAAGTTGGCAACAAACAAGACACTGGAGGGAAATGGTGGTATGGATCGTGAAGAGAAGACTCGGCCGAAAGATAAGCGGAAAAAAACGAGCAATAAAAAGGCCCCTAAACCTCCCAGACCTCCAAGAGGCCCGTCATTGGATGCCGCTGACCAGAAGCTAATCAAGGAACTCTCTGAGATTGCAATGTGGAAACGTGCAAGGGTTGAGAGGATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCATCATCCAATACCAATATATATGCAATGGTGTTCACGGTTCTCTTTTGTGTAGTGCTACTCTTCCAAGGAATTTCATCTAGCAGAAGCTCAACTGGAGGCTTTGAGGGATCTCCTTTGTCTGCAGGAAGAACGGAGGGCAGTTTGATCTCAATTCAGTTCTACCCAAATCCGTCATCAACTGCCCCGAATGGACCTGGTTCCGAGTCTCCCAATATGGTAGAGCAGGTTGCTGGTTCAGATCAGCAGGAGAATCTGCAAAGATGGGCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.03

Weight (kDa)

9.35

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	4 cut(s)	51, 141, 307, 375
AclWI	GGATC	4 cut(s)	12, 163, 282, 595
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	226, 549
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	356, 367
AgsI	TTSAA	5 cut(s)	35, 78, 202, 232, 454
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 218, 250
AluBI	AGCT	4 cut(s)	87, 388, 467, 567
AluI	AGCT	4 cut(s)	87, 388, 467, 567
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	4 cut(s)	12, 163, 282, 595
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	3 cut(s)	293, 330, 358
ApeKI	GCWGC	2 cut(s)	121, 467
ApoI	RAATTY	2 cut(s)	226, 549
AspS9I	GGNCC	3 cut(s)	331, 359, 671
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	108, 454
BccI	CCATC	2 cut(s)	146, 735
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	2 cut(s)	125, 558
BfmI	CTRYAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	3 cut(s)	122, 375, 468
BlsI	GCNGC	3 cut(s)	123, 376, 469
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	331, 359, 671
BmiI	GGNNCC	2 cut(s)	333, 679
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	361, 485
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	275, 594
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 367
Bse1I	ACTGG	2 cut(s)	258, 577
Bse3DI	GCAATG	3 cut(s)	199, 420, 510
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	3 cut(s)	376, 447, 482
BseLI	CCNNNNNNNGG	2 cut(s)	356, 367
BseMI	GCAATG	3 cut(s)	199, 420, 510
BseMII	CTCAG	2 cut(s)	8, 396
BseNI	ACTGG	2 cut(s)	258, 577
BseSI	GKGCMC	1 cut(s)	748
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	108, 454
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	295, 332, 360
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	356, 367
BsmAI	GTCTC	1 cut(s)	690
BsnI	GGCC	3 cut(s)	295, 332, 360
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
BspACI	CCGC	4 cut(s)	51, 141, 307, 375
BspANI	GGCC	3 cut(s)	295, 332, 360
BspCNI	CTCAG	2 cut(s)	9, 397
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	333, 679
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	694
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	12, 163, 282, 595
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	3 cut(s)	199, 420, 510
BsrI	ACTGG	2 cut(s)	258, 577
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	4 cut(s)	63, 165, 276, 545
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	17, 405, 471
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	376, 447, 482
BstKTI	GATC	7 cut(s)	7, 43, 158, 277, 590, 627, 721
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	2 cut(s)	108, 454
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BstZI	CGGCCG	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	295, 332, 360
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	376, 447, 482
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	331, 359, 671
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	127
CsiI	ACCWGGT	1 cut(s)	673
CviJI	RGCY	9 cut(s)	87, 295, 332, 360, 388, 449, 467, 567, 579
CviKI_1	RGCY	9 cut(s)	87, 295, 332, 360, 388, 449, 467, 567, 579
DdeI	CTNAG	3 cut(s)	17, 405, 471
DpnI	GATC	7 cut(s)	6, 42, 157, 276, 589, 626, 720
DpnII	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Eam1104I	CTCTTC	4 cut(s)	63, 165, 276, 545
EarI	CTCTTC	4 cut(s)	63, 165, 276, 545
EciI	GGCGGA	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	671
Eco52I	CGGCCG	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaiI	YATR	7 cut(s)	9, 138, 272, 497, 499, 501, 695
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	122, 375, 468
FokI	GGATG	3 cut(s)	383, 454, 469
Fsp4HI	GCNGC	3 cut(s)	122, 375, 468
FspBI	CTAG	2 cut(s)	125, 558
GluI	GCNGC	3 cut(s)	122, 375, 468
GsuI	CTGGAG	2 cut(s)	275, 594
HaeIII	GGCC	3 cut(s)	295, 332, 360
HgaI	GACGC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	74, 289, 683, 730
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	5 cut(s)	18, 151, 406, 682, 718
Hpy188III	TCNNGA	2 cut(s)	44, 278
Hpy8I	GTNNAC	1 cut(s)	513
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	5 cut(s)	413, 428, 503, 602, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	3 cut(s)	17, 405, 471
HpySE526I	ACGT	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
Lsp1109I	GCAGC	2 cut(s)	108, 454
LweI	GCATC	2 cut(s)	361, 485
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	2 cut(s)	125, 558
MaeII	ACGT	1 cut(s)	424
MalI	GATC	7 cut(s)	6, 42, 157, 276, 589, 626, 720
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
MboII	GAAGA	8 cut(s)	80, 182, 293, 298, 466, 469, 532, 618
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	3 cut(s)	226, 549, 630
MlyI	GAGTC	2 cut(s)	283, 692
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
NheI	GCTAGC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	333, 679
NmeAIII	GCCGAG	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	74, 730
PkrI	GCNGC	3 cut(s)	123, 376, 469
PleI	GAGTC	2 cut(s)	283, 691
PpsI	GAGTC	2 cut(s)	283, 691
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	333, 679
PspPI	GGNCC	3 cut(s)	331, 359, 671
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	122, 375, 468
Sau3AI	GATC	7 cut(s)	4, 40, 155, 274, 587, 624, 718
Sau96I	GGNCC	3 cut(s)	331, 359, 671
SchI	GAGTC	2 cut(s)	283, 692
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	748
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	361, 485
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	226, 549, 630
SsiI	CCGC	4 cut(s)	51, 141, 307, 375
SspMI	CTAG	2 cut(s)	125, 558
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	39, 95
TasI	AATT	3 cut(s)	226, 549, 630
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	74, 730
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	121, 467
TspDTI	ATGAA	3 cut(s)	458, 476, 543
TspGWI	ACGGA	2 cut(s)	626, 639
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	671
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	226, 549
XspI	CTAG	2 cut(s)	125, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.