Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

23529583 .. 23532690

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATCATAAGGGTCTGAGAGATAAAGATTGTGAAATCGATCTTGAAAGTGGGGTGATAGTTAGTGAAGAGGATTCAAGTGATAGCTCTGTTGCAAGTGTCAAAAAACAGGCTAAGACACTGCTAGCGAAGGTGTATGGTGGTTTTTCTGATAGTTCAGTTAATGCTGAAGATAGGGTTGTTTTTTGTGGCAATGGCTTCAACTCCAATGGGGTCTGCCCTGAGAATTTGAAGTCGGCGACAAACAAGACGCTGGATGGAAATGGTGGTATGGATCATACAGAGAAGACTCGGTCGAAAGATAAGCGAAAAAAAACGAGCAATAAAAAACCTCCTAAACCTCCCAGGCCTCCAAGAGGCCCGTCTTTGGATGCTGCTGACCAGAAGCTAATCAAGGAACTCTCTGAGATTGCAATGTGGAAACGTGCAAGGGTTGAGAGGATGAAGGCCTTGAAGAAGATGAAAGCTGCCAAGGCATCATCATCCAATAGCAATGTATATGCTATGGTGTTCACTGTTCTCTTTTGTGTAGTGCTGATCTTCCAAGGAATTTCATCTAGCAGAAGCTCAACTGTAGGCTTTGAGGGTTCTCCTTTGTCTGCAGGAAGAACGCAGGGCAGTTTGATCTCAATTCAGTTCTTTCCAAATCCGTCATCAAATGCCCCGAGCGGACCTGGTTCCGAGTCTCCCAATATGGTAGAGCAGGTTGCTGGTTCAGATCAGCATGAGAAGTTGAAAAGATGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

26.86

Weight (kDa)

9.44

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccBSI	CCGCTC	1 cut(s)	669
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	12, 282
AcsI	RAATTY	2 cut(s)	226, 549
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	356, 367
AgsI	TTSAA	6 cut(s)	47, 78, 202, 232, 454, 736
AjnI	CCWGG	2 cut(s)	344, 673
AluBI	AGCT	4 cut(s)	87, 388, 467, 567
AluI	AGCT	4 cut(s)	87, 388, 467, 567
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	12, 282
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	3 cut(s)	347, 358, 447
ApeKI	GCWGC	2 cut(s)	374, 467
ApoI	RAATTY	2 cut(s)	226, 549
AspS9I	GGNCC	2 cut(s)	359, 671
AsuHPI	GGTGA	1 cut(s)	67
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	361, 454
BccI	CCATC	2 cut(s)	251, 735
BciT130I	CCWGG	2 cut(s)	346, 675
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	2 cut(s)	125, 558
BfmI	CTRYAG	2 cut(s)	573, 600
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	375, 468
BlsI	GCNGC	2 cut(s)	376, 469
Bme1390I	CCNGG	2 cut(s)	346, 675
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	359, 671
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	2 cut(s)	346, 675
BmsI	GCATC	2 cut(s)	361, 485
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	344, 471, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 367
Bse3DI	GCAATG	3 cut(s)	199, 420, 499
BseBI	CCWGG	2 cut(s)	346, 675
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	344, 471, 544
BseGI	GGATG	4 cut(s)	262, 376, 447, 482
BseLI	CCNNNNNNNGG	2 cut(s)	356, 367
BseMI	GCAATG	3 cut(s)	199, 420, 499
BseMII	CTCAG	3 cut(s)	8, 213, 396
BseXI	GCAGC	2 cut(s)	361, 454
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	349, 360, 449
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	356, 367
BsmAI	GTCTC	1 cut(s)	690
BsnI	GGCC	3 cut(s)	349, 360, 449
BsoBI	CYCGRG	1 cut(s)	664
Bsp143I	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	3 cut(s)	349, 360, 449
BspCNI	CTCAG	3 cut(s)	9, 214, 397
BspDI	ATCGAT	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	694
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	12, 282
BsrBI	CCGCTC	1 cut(s)	669
BsrDI	GCAATG	3 cut(s)	199, 420, 499
BssECI	CCNNGG	3 cut(s)	344, 471, 544
BssMI	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
BssT1I	CCWWGG	2 cut(s)	471, 544
Bst2UI	CCWGG	2 cut(s)	346, 675
Bst4CI	ACNGT	2 cut(s)	517, 574
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	17, 114, 222, 405
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	262, 376, 447, 482
BstKTI	GATC	6 cut(s)	7, 43, 277, 540, 627, 721
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	346, 675
BstSCI	CCNGG	2 cut(s)	344, 673
BstSFI	CTRYAG	2 cut(s)	573, 600
BstV1I	GCAGC	2 cut(s)	361, 454
BstV2I	GAAGAC	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	349, 360, 449
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	262, 376, 447, 482
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	119, 513
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	359, 671
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	673
CviAII	CATG	1 cut(s)	725
DdeI	CTNAG	4 cut(s)	17, 114, 222, 405
DpnI	GATC	6 cut(s)	6, 42, 276, 539, 626, 720
DpnII	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	471, 544
Eco147I	AGGCCT	2 cut(s)	349, 449
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	344, 673
EcoT14I	CCWWGG	2 cut(s)	471, 544
ErhI	CCWWGG	2 cut(s)	471, 544
FaeI	CATG	1 cut(s)	728
FaiI	YATR	9 cut(s)	9, 138, 272, 279, 499, 501, 506, 695, 726
FatI	CATG	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	375, 468
FokI	GGATG	4 cut(s)	269, 383, 454, 469
Fsp4HI	GCNGC	2 cut(s)	375, 468
FspBI	CTAG	2 cut(s)	125, 558
GluI	GCNGC	2 cut(s)	375, 468
HaeIII	GGCC	3 cut(s)	349, 360, 449
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	728
HinfI	GANTC	3 cut(s)	74, 289, 683
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	5 cut(s)	18, 151, 406, 682, 718
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	2 cut(s)	124, 439
HpyCH4III	ACNGT	2 cut(s)	517, 574
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	95, 413, 428, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	4 cut(s)	17, 114, 222, 405
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	728
Kzo9I	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
Lsp1109I	GCAGC	2 cut(s)	361, 454
LweI	GCATC	2 cut(s)	361, 485
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	2 cut(s)	125, 558
MaeII	ACGT	1 cut(s)	424
MalI	GATC	6 cut(s)	6, 42, 276, 539, 626, 720
MbiI	CCGCTC	1 cut(s)	669
MboI	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
MboII	GAAGA	7 cut(s)	80, 182, 298, 466, 469, 532, 618
MluCI	AATT	3 cut(s)	226, 549, 630
MlyI	GAGTC	2 cut(s)	283, 692
MnlI	CCTC	7 cut(s)	64, 342, 350, 351, 360, 432, 577
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	346, 675
MvaI	CCWGG	2 cut(s)	346, 675
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	728
NlaIV	GGNNCC	1 cut(s)	679
PceI	AGGCCT	2 cut(s)	349, 449
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	376, 469
PleI	GAGTC	2 cut(s)	283, 691
PpsI	GAGTC	2 cut(s)	283, 691
Psp6I	CCWGG	2 cut(s)	344, 673
PspGI	CCWGG	2 cut(s)	344, 673
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	2 cut(s)	359, 671
PstI	CTGCAG	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	375, 468
Sau3AI	GATC	6 cut(s)	4, 40, 274, 537, 624, 718
Sau96I	GGNCC	2 cut(s)	359, 671
SchI	GAGTC	2 cut(s)	283, 692
ScrFI	CCNGG	2 cut(s)	346, 675
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	361, 485
SfcI	CTRYAG	2 cut(s)	573, 600
SinI	GGWCC	1 cut(s)	671
Sse9I	AATT	3 cut(s)	226, 549, 630
SseBI	AGGCCT	2 cut(s)	349, 449
SsiI	CCGC	1 cut(s)	669
SspMI	CTAG	2 cut(s)	125, 558
StuI	AGGCCT	2 cut(s)	349, 449
StyD4I	CCNGG	2 cut(s)	344, 673
StyI	CCWWGG	2 cut(s)	471, 544
TaaI	ACNGT	2 cut(s)	517, 574
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	39, 296
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	226, 549, 630
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	126, 520
TseI	GCWGC	2 cut(s)	374, 467
TspDTI	ATGAA	3 cut(s)	458, 476, 543
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	2 cut(s)	126, 520
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	671
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	226, 549
XspI	CTAG	2 cut(s)	125, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.