Rroxscaffold_5G00367830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007338
Physical Location & Seq
Forward (+)
49688735 .. 49691633
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367830.1

Sequence Viewer

Length: 753 bp
ATGGATCATAAGGGTCTGAGAGATAAAGATTTTGAAATCGATCTTGAGAGTGGGGTGGTAGTTAGTGAAGAGGATTCAAGTGATAGCTCTGTTTCGAGTGTCAATAAACAGGCAAAGACGCTGCTAGCAAAGGTTTATGGCGGATTTTCGGATGGATCAGTTAATGCTGAAGAGAGGGTTGGTTTGTGTGCCAATGGTTTCAACTGCAATGGGGTCTGCCCCGAGAATTTGAAGTTGGCAACAAACAAGACACTGGAGGGAAATGGTGGTATGGATCGTGAAGAGAAGACTCGGCCGAAAGATAAGCGGAAAAAAATGAGCAATAAAAAGGCCCCTAAACCTCCCAGACCTCCAAGAGGCCCGTCATTGGATGCCGCTGACCAGAAGCTAATCAAGGAACTCTCTGAGATTGCAATGTGGAAACGTGCAAGGGTTGAGAGGATGAAAGCCTTGAAGAAGATGAAAGCTGCTAAGGCATCATCATCCAATACCAATATATATGCCATGGTGTTCACGGTTCTCTTTTGTGTAGTGCTACTCTTCCAAGGAATTTCATCTAGCAGAAGCTCAACTGTAGGCTTTGAGGGATCTCCTTTGTCAGCAGGAAGAACGGAGGGCAGTTTGATCTCAATTCAGTTCTACCCAAATCCGTCATCAACTGCCCCGAATGGACCTGGTTCCGAGTCTCCCAATATGGTAGAGCAGGTTGCTGGTTCAGATCAGCAGGAGAAGCTGCAAAGATGGGCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.13

Weight (kDa)

9.28

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 694
AciI CCGC 3 cut(s) 141, 307, 375
AclWI GGATC 4 cut(s) 12, 163, 282, 595
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 226, 549
AcuI CTGAAG 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 356, 367
AgsI TTSAA 5 cut(s) 35, 78, 202, 232, 454
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 4 cut(s) 162, 194, 218, 250
AluBI AGCT 5 cut(s) 87, 388, 467, 567, 733
AluI AGCT 5 cut(s) 87, 388, 467, 567, 733
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 4 cut(s) 12, 163, 282, 595
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 3 cut(s) 293, 330, 358
ApeKI GCWGC 3 cut(s) 121, 467, 733
ApoI RAATTY 2 cut(s) 226, 549
AspS9I GGNCC 3 cut(s) 331, 359, 671
AsuNHI GCTAGC 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 108, 454, 720
BccI CCATC 2 cut(s) 146, 735
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 2 cut(s) 125, 558
BfmI CTRYAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 4 cut(s) 122, 375, 468, 734
BlsI GCNGC 4 cut(s) 123, 376, 469, 735
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 331, 359, 671
BmiI GGNNCC 2 cut(s) 333, 679
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 361, 485
BmtI GCTAGC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 504, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 367
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 2 cut(s) 214, 420
BseBI CCWGG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 504, 544
BseGI GGATG 4 cut(s) 157, 376, 447, 482
BseLI CCNNNNNNNGG 2 cut(s) 356, 367
BseMI GCAATG 2 cut(s) 214, 420
BseMII CTCAG 2 cut(s) 8, 396
BseNI ACTGG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 748
BseX3I CGGCCG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 108, 454, 720
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 295, 332, 360
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 356, 367
BsmAI GTCTC 1 cut(s) 690
BsnI GGCC 3 cut(s) 295, 332, 360
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 3 cut(s) 141, 307, 375
BspANI GGCC 3 cut(s) 295, 332, 360
BspCNI CTCAG 2 cut(s) 9, 397
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 333, 679
BspMI ACCTGC 1 cut(s) 694
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 4 cut(s) 12, 163, 282, 595
BsrDI GCAATG 2 cut(s) 214, 420
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 504, 544
BssMI GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
BssT1I CCWWGG 2 cut(s) 504, 544
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 517, 574
Bst6I CTCTTC 4 cut(s) 63, 165, 276, 545
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 17, 405, 471
BstDSI CCRYGG 1 cut(s) 504
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 157, 376, 447, 482
BstKTI GATC 7 cut(s) 7, 43, 158, 277, 590, 627, 721
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 2 cut(s) 473, 730
BstNI CCWGG 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 108, 454, 720
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BstZI CGGCCG 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 3 cut(s) 295, 332, 360
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 4 cut(s) 157, 376, 447, 482
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 331, 359, 671
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 1 cut(s) 127
CsiI ACCWGGT 1 cut(s) 673
CviAII CATG 1 cut(s) 505
DdeI CTNAG 3 cut(s) 17, 405, 471
DpnI GATC 7 cut(s) 6, 42, 157, 276, 589, 626, 720
DpnII GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
EaeI YGGCCR 1 cut(s) 293
EagI CGGCCG 1 cut(s) 293
Eam1104I CTCTTC 4 cut(s) 63, 165, 276, 545
EarI CTCTTC 4 cut(s) 63, 165, 276, 545
EciI GGCGGA 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 504, 544
Eco47I GGWCC 1 cut(s) 671
Eco52I CGGCCG 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 504, 544
ErhI CCWWGG 2 cut(s) 504, 544
FaeI CATG 1 cut(s) 508
FaiI YATR 8 cut(s) 9, 138, 272, 497, 499, 501, 506, 695
FatI CATG 1 cut(s) 504
Fnu4HI GCNGC 4 cut(s) 122, 375, 468, 734
FokI GGATG 4 cut(s) 164, 383, 454, 469
Fsp4HI GCNGC 4 cut(s) 122, 375, 468, 734
FspBI CTAG 2 cut(s) 125, 558
GluI GCNGC 4 cut(s) 122, 375, 468, 734
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 3 cut(s) 295, 332, 360
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 508
HinfI GANTC 3 cut(s) 74, 289, 683
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 5 cut(s) 18, 151, 406, 682, 718
Hpy188III TCNNGA 2 cut(s) 44, 278
Hpy8I GTNNAC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 517, 574
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 207, 413, 428, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 730
HpyF3I CTNAG 3 cut(s) 17, 405, 471
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 1 cut(s) 508
Kzo9I GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
Lsp1109I GCAGC 3 cut(s) 108, 454, 720
LweI GCATC 2 cut(s) 361, 485
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 2 cut(s) 125, 558
MaeII ACGT 1 cut(s) 424
MalI GATC 7 cut(s) 6, 42, 157, 276, 589, 626, 720
MboI GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
MboII GAAGA 8 cut(s) 80, 182, 293, 298, 466, 469, 532, 618
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 3 cut(s) 226, 549, 630
MlyI GAGTC 2 cut(s) 283, 692
MnlI CCTC 9 cut(s) 64, 168, 250, 350, 351, 360, 432, 577, 607
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 473, 730
NcoI CCATGG 1 cut(s) 504
NdeII GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 2 cut(s) 333, 679
NmeAIII GCCGAG 1 cut(s) 271
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 4 cut(s) 123, 376, 469, 735
PleI GAGTC 2 cut(s) 283, 691
PpsI GAGTC 2 cut(s) 283, 691
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 333, 679
PspPI GGNCC 3 cut(s) 331, 359, 671
PsuI RGATCY 1 cut(s) 587
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 4 cut(s) 122, 375, 468, 734
Sau3AI GATC 7 cut(s) 4, 40, 155, 274, 587, 624, 718
Sau96I GGNCC 3 cut(s) 331, 359, 671
SchI GAGTC 2 cut(s) 283, 692
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 748
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 2 cut(s) 361, 485
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 3 cut(s) 226, 549, 630
SsiI CCGC 3 cut(s) 141, 307, 375
SspMI CTAG 2 cut(s) 125, 558
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 504, 544
TaaI ACNGT 2 cut(s) 517, 574
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 39, 95
TasI AATT 3 cut(s) 226, 549, 630
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 258
TseI GCWGC 3 cut(s) 121, 467, 733
TspDTI ATGAA 3 cut(s) 458, 476, 543
TspGWI ACGGA 2 cut(s) 626, 639
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 2 cut(s) 226, 549
XspI CTAG 2 cut(s) 125, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.