Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

11839814 .. 11842918

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1150300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATCAAAAGAGTCCAAGGGAAAAGGACTTTGAAGTTGATCTTGAAAATGGGGTGGTAGTTAGTGAAGAAGATTCAAGTGATAGCGGTGTTTCGAGTACTAAGAAGCAGGCAAAGACATTGATTGCTAAGGTTTGTGGCGGACTGTTGGATGGAACAGCTAAAGTTGAAGATACAATCGGTTTGTGTGGCAATGGGTCCAACTCCAGCGTGGTGTGCCCCGATAACTTGAAGGTGGCAACAAACAAGGTGCTGGAGGGGAATGAGTGCATAGATCATGTAGGGAAGTCACGGGTGAAGGACAAGCGGAAGAAGACAAGCAATAAAAAGCCTCCTAAACCTCCCAGACCTCCAAGAGGCCCATCATTGGATGCGGCTGACCAGAAGTTAATCAAGGAACTCTCTGAGATTGCCATGTGGAAACGTGCAAGGATTGAGCGGATGAAAGCCTTAAAGAAGATGAAAGCTTCTAAGGCATCGTCTTCCAATAGCAGCACATTTGCCATGCTGCTCACCATTCTCTTCTGTCTCGTGCTAATCTTACAAGGAATTTCGTATAGAAGAAGCTCACCTGTAAACTTTGAGGGATCTCCAGTGTCTGCAGGAGGAGCAGAGGGCAATTTGATCTCAGTTCAGTACTATCCAAATCCATCATCAAACGAACCTGGTTCTGCGTCCCCCAATATCGTAGAGCAGGTTGCTGGTTCGGATCCACAGGAGAAGCTGAAAAGATGGGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.53

Weight (kDa)

9.27

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	439
AciI	CCGC	5 cut(s)	87, 141, 307, 374, 439
AclWI	GGATC	4 cut(s)	12, 595, 704, 717
AcsI	RAATTY	1 cut(s)	549
AfaI	GTAC	2 cut(s)	100, 638
AfiI	CCNNNNNNNGG	2 cut(s)	356, 367
AgsI	TTSAA	5 cut(s)	35, 47, 78, 170, 232
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	4 cut(s)	161, 467, 567, 724
AluI	AGCT	4 cut(s)	161, 467, 567, 724
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	4 cut(s)	12, 595, 704, 717
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	492, 508
ApoI	RAATTY	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	198, 359
AsuHPI	GGTGA	3 cut(s)	307, 505, 561
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	709
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	320, 474
BbvI	GCAGC	2 cut(s)	495, 504
BccI	CCATC	4 cut(s)	146, 370, 658, 726
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	3 cut(s)	375, 493, 509
BlsI	GCNGC	3 cut(s)	376, 494, 510
BmcAI	AGTACT	2 cut(s)	100, 638
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	198, 359
BmiI	GGNNCC	2 cut(s)	199, 711
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	361, 485
BpiI	GAAGAC	2 cut(s)	320, 474
BpmI	CTGGAG	3 cut(s)	190, 275, 576
Bpu10I	CCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 367
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	157, 376, 447
BseLI	CCNNNNNNNGG	2 cut(s)	356, 367
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	396, 642
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	495, 504
BshFI	GGCC	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	356, 367
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
BspACI	CCGC	5 cut(s)	87, 141, 307, 374, 439
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	397, 641
BspLI	GGNNCC	2 cut(s)	199, 711
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	4 cut(s)	12, 595, 704, 717
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	5 cut(s)	102, 129, 405, 471, 628
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	157, 376, 447
BstKTI	GATC	6 cut(s)	7, 43, 277, 590, 627, 712
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 473, 608
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	495, 504
BstV2I	GAAGAC	2 cut(s)	320, 474
BstX2I	RGATCY	2 cut(s)	587, 709
BstYI	RGATCY	2 cut(s)	587, 709
BsuRI	GGCC	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	157, 376, 447
BtsIMutI	CAGTG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	198, 359
CseI	GACGC	1 cut(s)	663
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	99, 637
CviAII	CATG	3 cut(s)	278, 415, 505
CviJI	RGCY	8 cut(s)	161, 331, 360, 377, 449, 467, 567, 724
CviKI_1	RGCY	8 cut(s)	161, 331, 360, 377, 449, 467, 567, 724
CviQI	GTAC	2 cut(s)	99, 637
DdeI	CTNAG	5 cut(s)	102, 129, 405, 471, 628
DpnI	GATC	6 cut(s)	6, 42, 276, 589, 626, 711
DpnII	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	3 cut(s)	281, 418, 508
FaiI	YATR	5 cut(s)	272, 279, 416, 506, 558
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	3 cut(s)	277, 414, 504
Fnu4HI	GCNGC	3 cut(s)	375, 493, 509
FokI	GGATG	3 cut(s)	164, 383, 454
Fsp4HI	GCNGC	3 cut(s)	375, 493, 509
GluI	GCNGC	3 cut(s)	375, 493, 509
GsuI	CTGGAG	3 cut(s)	190, 275, 576
HaeIII	GGCC	1 cut(s)	360
HgaI	GACGC	1 cut(s)	663
Hin1II	CATG	3 cut(s)	281, 418, 508
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	2 cut(s)	13, 74
HphI	GGTGA	3 cut(s)	307, 505, 561
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	2 cut(s)	406, 709
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	2 cut(s)	226, 292
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	270, 428, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 473, 608
HpyF3I	CTNAG	5 cut(s)	102, 129, 405, 471, 628
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	281, 418, 508
Kzo9I	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	2 cut(s)	495, 504
LweI	GCATC	2 cut(s)	361, 485
MabI	ACCWGGT	1 cut(s)	664
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	6 cut(s)	6, 42, 276, 589, 626, 711
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
MboII	GAAGA	9 cut(s)	80, 83, 182, 322, 325, 469, 474, 514, 573
MflI	RGATCY	2 cut(s)	587, 709
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	2 cut(s)	549, 619
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	2 cut(s)	129, 225
MnlI	CCTC	8 cut(s)	250, 342, 350, 351, 360, 577, 599, 607
MseI	TTAA	2 cut(s)	389, 452
MspR9I	CCNGG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	216, 473, 608
NdeII	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
NlaIII	CATG	3 cut(s)	281, 418, 508
NlaIV	GGNNCC	2 cut(s)	199, 711
NmuCI	GTSAC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	376, 494, 510
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	2 cut(s)	199, 711
PspPI	GGNCC	2 cut(s)	198, 359
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	587, 709
RsaI	GTAC	2 cut(s)	100, 638
RsaNI	GTAC	2 cut(s)	99, 637
SaqAI	TTAA	2 cut(s)	389, 452
SatI	GCNGC	3 cut(s)	375, 493, 509
Sau3AI	GATC	6 cut(s)	4, 40, 274, 587, 624, 709
Sau96I	GGNCC	2 cut(s)	198, 359
ScaI	AGTACT	2 cut(s)	100, 638
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	221
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	361, 485
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	549, 619
SsiI	CCGC	5 cut(s)	87, 141, 307, 374, 439
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	549, 619
TatI	WGTACW	2 cut(s)	98, 636
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	389, 452
Tru9I	TTAA	2 cut(s)	389, 452
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	2 cut(s)	492, 508
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	458, 476
TspRI	CASTG	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
ZrmI	AGTACT	2 cut(s)	100, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.