Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007338

Physical Location & Seq

Genomic Coordinates Reverse (-)

9087879 .. 9089250

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATCAAAAGAGTCCGAGGGAAAAGGACTTTGAAGTCGATCTTGAAAGTGGGGTGGTAGTTAGTGAAGAGGATTCAAGCGATACCCCTGTTTCGTGTGCTAAGAAACCGGCAAAGACATTGATTGCTAAGGTTTGTCGCGGTCTGTTGGATGGAACGGTTAAAGTTGAAGATAGAATTGGTTTGTGTGGCAATGGGTCCAACTCCAATGTAGTGTGCCCCGATAACTTGAAGGTGGCAACAAACAAGGTGCTGGAGGGGAATGAGTGCATGGATCATGTAGAGAAGACACGGGTGAAGGACAAGCGGAAGAAGACGAGTAATAAAAAGCCTCCTAAACCTCCCAGACCTCCACGAGGCCCATCATTGGATGCGGCAGACCAGAAGTTAATCAAGGAACTCTCTGAGATTGCCATGTGGAAACGTGCAAGGATTGAGCGAATGAAAGCGTTGAAGAAGATGAAAGCTGCTAAGGCGTCTTCCAATAGCGGCACATTTGCCATGCTGTTCACCATTCTCTTCTGTCTTGTGCTAATCTTTCAAGGAATTTCGTCTAGAAGAAGCTCACCTGTAAACATTAAGGGATCTCCATTGTCTGCTGGACGAACAGACGGCAATTTGATCTCAGTTCAGTACTATCCAAATCTGTCATCAAAGGGACCTGGTTCTGCATCCCCCAATATCGTAGAGCAGGTTGCTGGTTTGGATCCGCCGGAGAAGCTGAAAAGATGGGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.73

Weight (kDa)

9.62

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17120 AT3G17120 AT3G17120 AT3G17120 AT3G17120
fragaria_vesca	FvH4_4g20190
malus_domestica	MD13G1149900.v1.1 MD16G1150300.v1.1
prunus_persica	Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1 Prupe.1G113900_v2.0.a1
pyrus_communis	pycom13g12910 pycom16g12870
rosa_chinensis	RchiOBHm_Chr4g0425851
rosa_laevigata	RLG00000007335
rosa_multiflora	Rmu_sc0009636.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367830
rosa_rugosa	Rorug04G0206800 Rorug04G0206900 Rorug04G0207100
rosa_samantha	Rh4AG264000 Rh4BG270000 Rh4CG282400 Rh4DG266200
rosa_wichuraiana	Rw4G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	682
AccII	CGCG	1 cut(s)	141
AciI	CCGC	5 cut(s)	141, 307, 374, 489, 710
AclWI	GGATC	5 cut(s)	12, 282, 592, 701, 714
AcsI	RAATTY	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	356, 367
AgsI	TTSAA	7 cut(s)	35, 47, 78, 170, 232, 454, 542
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	3 cut(s)	467, 564, 721
AluI	AGCT	3 cut(s)	467, 564, 721
AlwI	GGATC	5 cut(s)	12, 282, 592, 701, 714
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	546
AspS9I	GGNCC	3 cut(s)	198, 359, 659
AsuHPI	GGTGA	3 cut(s)	307, 502, 558
AvaII	GGWCC	2 cut(s)	198, 659
BaeGI	GKGCMC	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BamHI	GGATCC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	3 cut(s)	293, 320, 471
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	146, 370, 723
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	1 cut(s)	663
BfaI	CTAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	682
BisI	GCNGC	3 cut(s)	375, 468, 490
BlsI	GCNGC	3 cut(s)	376, 469, 491
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	2 cut(s)	198, 659
BmgT120I	GGNCC	3 cut(s)	198, 359, 659
BmiI	GGNNCC	3 cut(s)	199, 660, 708
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	2 cut(s)	361, 680
BpiI	GAAGAC	3 cut(s)	293, 320, 471
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	2 cut(s)	129, 471
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 367
Bse118I	RCCGGY	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	157, 376, 671
BseLI	CCNNNNNNNGG	2 cut(s)	356, 367
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	396, 639
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	110, 713
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	2 cut(s)	356, 367
BsmFI	GGGAC	1 cut(s)	672
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
BspACI	CCGC	5 cut(s)	141, 307, 374, 489, 710
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	397, 638
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	199, 660, 708
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	5 cut(s)	12, 282, 592, 701, 714
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
BssNI	GRCGYC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	63, 524
BstACI	GRCGYC	1 cut(s)	476
BstDEI	CTNAG	5 cut(s)	102, 129, 405, 471, 625
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	157, 376, 671
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	6 cut(s)	7, 43, 277, 587, 624, 709
BstMBI	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 718
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	3 cut(s)	293, 320, 471
BstX2I	RGATCY	2 cut(s)	584, 706
BstYI	RGATCY	2 cut(s)	584, 706
BsuRI	GGCC	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	157, 376, 671
BveI	ACCTGC	1 cut(s)	682
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	198, 359, 659
CseI	GACGC	1 cut(s)	465
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	4 cut(s)	271, 278, 415, 502
CviJI	RGCY	5 cut(s)	331, 360, 467, 564, 721
CviKI_1	RGCY	5 cut(s)	331, 360, 467, 564, 721
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	5 cut(s)	102, 129, 405, 471, 625
DpnI	GATC	6 cut(s)	6, 42, 276, 586, 623, 708
DpnII	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eam1104I	CTCTTC	2 cut(s)	63, 524
EarI	CTCTTC	2 cut(s)	63, 524
EciI	GGCGGA	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	198, 659
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	661
FaeI	CATG	4 cut(s)	274, 281, 418, 505
FaiI	YATR	4 cut(s)	272, 279, 416, 503
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	4 cut(s)	270, 277, 414, 501
Fnu4HI	GCNGC	3 cut(s)	375, 468, 490
FokI	GGATG	3 cut(s)	164, 383, 658
Fsp4HI	GCNGC	3 cut(s)	375, 468, 490
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	3 cut(s)	375, 468, 490
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	2 cut(s)	110, 713
HgaI	GACGC	1 cut(s)	465
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	274, 281, 418, 505
HinfI	GANTC	2 cut(s)	13, 74
HpaII	CCGG	2 cut(s)	110, 713
HphI	GGTGA	3 cut(s)	307, 502, 558
Hpy166II	GTNNAC	2 cut(s)	510, 574
Hpy188I	TCNGA	2 cut(s)	18, 406
Hpy188III	TCNNGA	2 cut(s)	44, 555
Hpy8I	GTNNAC	2 cut(s)	510, 574
HpyAV	CCTTC	2 cut(s)	226, 292
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	270, 428, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 718
HpyF3I	CTNAG	5 cut(s)	102, 129, 405, 471, 625
HpySE526I	ACGT	1 cut(s)	424
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	274, 281, 418, 505
Kzo9I	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	2 cut(s)	361, 680
MabI	ACCWGGT	1 cut(s)	661
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	424
MalI	GATC	6 cut(s)	6, 42, 276, 586, 623, 708
MboI	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
MflI	RGATCY	2 cut(s)	584, 706
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	177, 546, 616
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	2 cut(s)	129, 225
MnlI	CCTC	7 cut(s)	12, 64, 250, 342, 350, 351, 360
MseI	TTAA	3 cut(s)	162, 389, 579
MspI	CCGG	2 cut(s)	110, 713
MspR9I	CCNGG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	473, 718
NdeII	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
NlaIII	CATG	4 cut(s)	274, 281, 418, 505
NlaIV	GGNNCC	3 cut(s)	199, 660, 708
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	376, 469, 491
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	3 cut(s)	199, 660, 708
PspPI	GGNCC	3 cut(s)	198, 359, 659
PspPPI	RGGWCCY	1 cut(s)	659
PsuI	RGATCY	2 cut(s)	584, 706
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	162, 389, 579
SatI	GCNGC	3 cut(s)	375, 468, 490
Sau3AI	GATC	6 cut(s)	4, 40, 274, 584, 621, 706
Sau96I	GGNCC	3 cut(s)	198, 359, 659
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	221
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	361, 680
SinI	GGWCC	2 cut(s)	198, 659
Sse9I	AATT	3 cut(s)	177, 546, 616
SsiI	CCGC	5 cut(s)	141, 307, 374, 489, 710
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	177, 546, 616
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	2 cut(s)	377, 492
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	162, 389, 579
Tru9I	TTAA	3 cut(s)	162, 389, 579
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	458, 476
VpaK11BI	GGWCC	2 cut(s)	198, 659
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	554
XspI	CTAG	1 cut(s)	555
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.