Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

6023844 .. 6024710

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17609.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCTCTCCAACGACCCAATGGGAACTCGAGTTCGTCTTCTTCCCACAAGAAGCACAAAACTGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGACGATGGAGTCAACAATCCGGAGCTTGACCAGACTCAAAATGGAGTCTCTACAGCTAAACGCCGCCGTGGAAGAAACCCTGTTGATAAAGAATATAGAAGCCTCAAGAGATTATTGAGGAACAGAGTATCAGCGCAACAAGCAAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAATGAGTTACAGAACAACAATGACCAGCTCGAAGAGAAGATTTCTACTTTGACGAACGAGAACACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAACTGATGACAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

10.06

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	63 - 122	1.5e-12	bZIP transcription factor
bZIP_2	PF07716	67 - 116	1.1e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	16, 48
AluBI	AGCT	5 cut(s)	68, 124, 155, 287, 316
AluI	AGCT	5 cut(s)	68, 124, 155, 287, 316
Alw26I	GTCTC	2 cut(s)	9, 151
AlwI	GGATC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	65, 90, 93
AspLEI	GCGC	2 cut(s)	98, 235
AvaI	CYCGRG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	77, 102, 105
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	9, 151
BfmI	CTRYAG	2 cut(s)	63, 150
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	4 cut(s)	66, 91, 94, 163
BlsI	GCNGC	4 cut(s)	67, 92, 95, 164
BmeT110I	CYCGRG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	77, 102, 105
BshFI	GGCC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	9, 151
BsnI	GGCC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	28
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 235
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	2 cut(s)	9, 151
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	63, 150
BstV1I	GCAGC	3 cut(s)	77, 102, 105
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	166
CfoI	GCGC	2 cut(s)	98, 235
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	7 cut(s)	68, 124, 155, 201, 287, 316, 385
CviKI_1	RGCY	7 cut(s)	68, 124, 155, 201, 287, 316, 385
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	28
FaeI	CATG	1 cut(s)	81
FaiI	YATR	3 cut(s)	79, 195, 264
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	66, 91, 94, 163
Fsp4HI	GCNGC	4 cut(s)	66, 91, 94, 163
GlaI	GCGC	2 cut(s)	97, 234
GluI	GCNGC	4 cut(s)	66, 91, 94, 163
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	2 cut(s)	98, 235
Hin1II	CATG	1 cut(s)	81
Hin6I	GCGC	2 cut(s)	96, 233
HinP1I	GCGC	2 cut(s)	96, 233
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	108, 133, 144, 278
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	119, 205, 282
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	81
HspAI	GCGC	2 cut(s)	96, 233
Kpn2I	TCCGGA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	54, 132, 143, 192, 326
Lsp1109I	GCAGC	3 cut(s)	77, 102, 105
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	6 cut(s)	30, 33, 183, 265, 332, 337
MlyI	GAGTC	3 cut(s)	117, 127, 153
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	210, 212, 243
MroI	TCCGGA	1 cut(s)	118
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	81
NspI	RCATGY	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	385
PciI	ACATGT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	67, 92, 95, 164
PleI	GAGTC	3 cut(s)	116, 127, 152
PpsI	GAGTC	3 cut(s)	116, 127, 152
PscI	ACATGT	1 cut(s)	77
PspXI	VCTCGAGB	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	66, 91, 94, 163
Sau3AI	GATC	1 cut(s)	71
SchI	GAGTC	3 cut(s)	117, 127, 153
SetI	ASST	5 cut(s)	70, 126, 157, 289, 318
SfcI	CTRYAG	2 cut(s)	63, 150
Sfr274I	CTCGAG	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	28, 203
SmoI	CTYRAG	2 cut(s)	28, 203
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	163
StuI	AGGCCT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	29, 318
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseI	GCWGC	3 cut(s)	65, 90, 93
XceI	RCATGY	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 137
XhoI	CTCGAG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.