Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

56031379 .. 56032855

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCTGGGTCTTCTTCGTCTTCATGGAGAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACTCTCTCCAAGATCATCAAAGTGACAAGAAGCATAAACTAGACGTTGATTCATTTTGGTCATGGGATGATGATGATGATGATGATGATGGTAATGTTAATCCAGAAGATAGCGACGAAGATATGTTCACCGTTCCGGACGTCGAGGCTATACCGCCTGATGATAATCCCATTAGCACCTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACCCTGGGGAAATTGGCCTTTCGGGTAAACGCCGCAGAGGGCGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCAACCCTCATTAATGAAAACACCATGCTTCGAAAGGTTCTTATGAATACAAGGCCAAAGGTGGACGAAAGCATAGATCAAAAGCAGGATCGATCGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

203

Amino Acids

23.16

Weight (kDa)

5.34

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	122 - 181	5.3e-13	bZIP transcription factor
bZIP_2	PF07716	125 - 173	1.3e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	245, 340
AclWI	GGATC	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	310, 450
AluBI	AGCT	2 cut(s)	32, 84
AluI	AGCT	2 cut(s)	32, 84
AlwI	GGATC	1 cut(s)	603
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	322, 560
AseI	ATTAAT	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	211, 271
AsuII	TTCGAA	1 cut(s)	538
BbsI	GAAGAC	3 cut(s)	30, 39, 382
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	312, 452
BfaI	CTAG	4 cut(s)	9, 81, 131, 297
BfmI	CTRYAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	312, 452
BmrFI	CCNGG	2 cut(s)	312, 452
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	3 cut(s)	30, 39, 382
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	538
Bsa29I	ATCGAT	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	310, 311, 465
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	312, 452
BseCI	ATCGAT	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	310, 311, 465
BseGI	GGATG	2 cut(s)	163, 484
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseYI	CCCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	602
BshFI	GGCC	2 cut(s)	324, 562
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	426
BsnI	GGCC	2 cut(s)	324, 562
Bsp119I	TTCGAA	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	103, 504, 583, 595, 599
BspACI	CCGC	2 cut(s)	245, 340
BspANI	GGCC	2 cut(s)	324, 562
BspDI	ATCGAT	1 cut(s)	598
BspEI	TCCGGA	1 cut(s)	226
BspPI	GGATC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	538
BssECI	CCNNGG	3 cut(s)	310, 311, 465
BssMI	GATC	5 cut(s)	103, 504, 583, 595, 599
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	312, 452
Bst4CI	ACNGT	2 cut(s)	223, 277
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	163, 484
BstKTI	GATC	5 cut(s)	106, 507, 586, 598, 602
BstMBI	GATC	5 cut(s)	103, 504, 583, 595, 599
BstMCI	CGRYCG	1 cut(s)	602
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	312, 452
BstSCI	CCNGG	2 cut(s)	310, 450
BstSFI	CTRYAG	1 cut(s)	273
BstV2I	GAAGAC	3 cut(s)	30, 39, 382
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	324, 562
BsuTUI	ATCGAT	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	163, 484
ClaI	ATCGAT	1 cut(s)	598
CviAII	CATG	3 cut(s)	51, 153, 532
CviJI	RGCY	7 cut(s)	32, 84, 239, 324, 419, 464, 562
CviKI_1	RGCY	7 cut(s)	32, 84, 239, 324, 419, 464, 562
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	5 cut(s)	105, 506, 585, 597, 601
DpnII	GATC	5 cut(s)	103, 504, 583, 595, 599
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	310, 450
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	54, 156, 535
FaiI	YATR	8 cut(s)	52, 126, 154, 215, 242, 533, 551, 581
FatI	CATG	3 cut(s)	50, 152, 531
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	2 cut(s)	170, 491
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	4 cut(s)	9, 81, 131, 297
GluI	GCNGC	1 cut(s)	340
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	324, 562
HapII	CCGG	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	54, 156, 535
HinfI	GANTC	4 cut(s)	19, 140, 378, 455
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	211, 271
Hpy166II	GTNNAC	4 cut(s)	219, 335, 439, 571
Hpy188III	TCNNGA	3 cut(s)	194, 227, 459
Hpy8I	GTNNAC	4 cut(s)	219, 335, 439, 571
Hpy99I	CGWCG	2 cut(s)	209, 236
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	223, 277
HpyCH4IV	ACGT	3 cut(s)	135, 231, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	3 cut(s)	135, 231, 441
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	54, 156, 535
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	103, 504, 583, 595, 599
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	18, 207, 240, 261, 297, 324, 437, 464, 578
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	4 cut(s)	9, 81, 131, 297
MaeII	ACGT	3 cut(s)	135, 231, 441
MaeIII	GTNAC	2 cut(s)	113, 277
MalI	GATC	5 cut(s)	105, 506, 585, 597, 601
MboI	GATC	5 cut(s)	103, 504, 583, 595, 599
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 209, 221, 387, 509
MflI	RGATCY	1 cut(s)	504
MluCI	AATT	2 cut(s)	318, 484
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	6 cut(s)	99, 229, 280, 338, 469, 524
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	3 cut(s)	189, 519, 606
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	312, 452
MvaI	CCWGG	2 cut(s)	312, 452
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	5 cut(s)	103, 504, 583, 595, 599
NlaIII	CATG	3 cut(s)	54, 156, 535
NmuCI	GTSAC	2 cut(s)	113, 277
NspV	TTCGAA	1 cut(s)	538
PasI	CCCWGGG	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	19, 140, 455
PkrI	GCNGC	1 cut(s)	341
Ple19I	CGATCG	1 cut(s)	602
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	310, 450
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	2 cut(s)	310, 450
PsuI	RGATCY	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	189, 519, 606
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	5 cut(s)	103, 504, 583, 595, 599
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	312, 452
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	318, 484
SsiI	CCGC	2 cut(s)	245, 340
SspMI	CTAG	4 cut(s)	9, 81, 131, 297
StyD4I	CCNGG	2 cut(s)	310, 450
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	223, 277
TaiI	ACGT	3 cut(s)	138, 234, 444
TaqI	TCGA	4 cut(s)	234, 373, 538, 598
TasI	AATT	2 cut(s)	318, 484
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	19, 140, 455
Tru1I	TTAA	3 cut(s)	189, 519, 606
Tru9I	TTAA	3 cut(s)	189, 519, 606
TseFI	GTSAC	2 cut(s)	113, 277
Tsp45I	GTSAC	2 cut(s)	113, 277
TspDTI	ATGAA	4 cut(s)	39, 132, 537, 566
VspI	ATTAAT	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	4 cut(s)	9, 81, 131, 297
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.