Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Reverse (-)

14349421 .. 14350908

Gene Structure 1488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCCGGGTCTTCTTCGTCTTCATGGAGAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACGCTCTCCAAGATCATCAAAGTCACGCTCTCCAAGATCATCAAAGTAACAAGAAGCATAAACTAGAAGATAGCGACGAAGATATGTTCACCGTTCCGGACGTCGAGGCTATACCGCCTGATGACATTCCCATTAGCACCTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACCCTGGGGAAATTGGCCTTTCTGGCAAACGCCGCAGAGGGCGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTATGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGGCCCTCGTTAACGAAAACACCATGCTTCGAAAGGTTCTTATGAATACAAGGCCAAAAGTGGACGAAAGCATGGAGCAAAAGCAGGATCGATCGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

191

Amino Acids

21.62

Weight (kDa)

9.33

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	109 - 168	2.1e-11	bZIP transcription factor
bZIP_2	PF07716	112 - 161	1.3e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	2 cut(s)	206, 301
AclWI	GGATC	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	271, 411
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
AlwI	GGATC	1 cut(s)	564
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	283, 471, 521
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	172, 232
AsuII	TTCGAA	1 cut(s)	499
BbsI	GAAGAC	3 cut(s)	30, 39, 343
BciT130I	CCWGG	2 cut(s)	273, 413
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	4 cut(s)	9, 81, 155, 258
BfmI	CTRYAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	3 cut(s)	34, 273, 413
BmgT120I	GGNCC	1 cut(s)	472
BmrFI	CCNGG	3 cut(s)	34, 273, 413
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	3 cut(s)	30, 39, 343
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	271, 272, 426
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	273, 413
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	3 cut(s)	271, 272, 426
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	285, 473, 523
BshVI	ATCGAT	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	33, 188
BslI	CCNNNNNNNGG	1 cut(s)	387
BsnI	GGCC	3 cut(s)	285, 473, 523
Bsp119I	TTCGAA	1 cut(s)	499
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	103, 127, 465, 556, 560
BspACI	CCGC	2 cut(s)	206, 301
BspANI	GGCC	3 cut(s)	285, 473, 523
BspDI	ATCGAT	1 cut(s)	559
BspEI	TCCGGA	1 cut(s)	187
BspPI	GGATC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	271, 272, 426
BssMI	GATC	5 cut(s)	103, 127, 465, 556, 560
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	273, 413
Bst4CI	ACNGT	2 cut(s)	184, 238
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	5 cut(s)	106, 130, 468, 559, 563
BstMBI	GATC	5 cut(s)	103, 127, 465, 556, 560
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 300, 377
BstNI	CCWGG	2 cut(s)	273, 413
BstSCI	CCNGG	3 cut(s)	32, 271, 411
BstSFI	CTRYAG	1 cut(s)	234
BstV2I	GAAGAC	3 cut(s)	30, 39, 343
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	465
Bsu15I	ATCGAT	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	285, 473, 523
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	559
CviAII	CATG	3 cut(s)	51, 493, 541
CviJI	RGCY	8 cut(s)	32, 84, 200, 285, 380, 425, 473, 523
CviKI_1	RGCY	8 cut(s)	32, 84, 200, 285, 380, 425, 473, 523
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	5 cut(s)	105, 129, 467, 558, 562
DpnII	GATC	5 cut(s)	103, 127, 465, 556, 560
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	271, 411
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	54, 496, 544
FaiI	YATR	8 cut(s)	52, 150, 176, 203, 402, 494, 512, 542
FatI	CATG	3 cut(s)	50, 492, 540
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	4 cut(s)	9, 81, 155, 258
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	285, 473, 523
HapII	CCGG	2 cut(s)	33, 188
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	54, 496, 544
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	19, 339, 416
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	2 cut(s)	33, 188
HphI	GGTGA	2 cut(s)	172, 232
Hpy166II	GTNNAC	3 cut(s)	180, 481, 532
Hpy188III	TCNNGA	2 cut(s)	188, 420
Hpy8I	GTNNAC	3 cut(s)	180, 481, 532
Hpy99I	CGWCG	2 cut(s)	170, 197
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	184, 238
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 300, 377
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	54, 496, 544
Kpn2I	TCCGGA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	103, 127, 465, 556, 560
LmnI	GCTCC	2 cut(s)	89, 544
LpnPI	CCDG	9 cut(s)	46, 201, 222, 258, 276, 285, 398, 425, 539
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	4 cut(s)	9, 81, 155, 258
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	113, 137, 238
MalI	GATC	5 cut(s)	105, 129, 467, 558, 562
MboI	GATC	5 cut(s)	103, 127, 465, 556, 560
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 170, 182, 348, 470
MflI	RGATCY	1 cut(s)	465
MluCI	AATT	2 cut(s)	279, 445
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	99, 190, 241, 299, 430, 485
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	2 cut(s)	480, 567
MspI	CCGG	2 cut(s)	33, 188
MspR9I	CCNGG	3 cut(s)	34, 273, 413
MvaI	CCWGG	2 cut(s)	273, 413
MwoI	GCNNNNNNNGC	3 cut(s)	291, 300, 377
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	5 cut(s)	103, 127, 465, 556, 560
NlaIII	CATG	3 cut(s)	54, 496, 544
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	113, 238
NspV	TTCGAA	1 cut(s)	499
PasI	CCCWGGG	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	19, 416
PkrI	GCNGC	1 cut(s)	302
Ple19I	CGATCG	1 cut(s)	563
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	271, 411
PspGI	CCWGG	2 cut(s)	271, 411
PspPI	GGNCC	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	465
PvuI	CGATCG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	480, 567
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	5 cut(s)	103, 127, 465, 556, 560
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	3 cut(s)	34, 273, 413
SetI	ASST	7 cut(s)	62, 86, 195, 233, 399, 414, 507
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	499
Sse9I	AATT	2 cut(s)	279, 445
SsiI	CCGC	2 cut(s)	206, 301
SspMI	CTAG	4 cut(s)	9, 81, 155, 258
StyD4I	CCNGG	3 cut(s)	32, 271, 411
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	184, 238
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	4 cut(s)	195, 334, 499, 559
TasI	AATT	2 cut(s)	279, 445
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	19, 416
Tru1I	TTAA	2 cut(s)	480, 567
Tru9I	TTAA	2 cut(s)	480, 567
TseFI	GTSAC	2 cut(s)	113, 238
Tsp45I	GTSAC	2 cut(s)	113, 238
TspDTI	ATGAA	2 cut(s)	39, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	4 cut(s)	9, 81, 155, 258
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.