Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

53136917 .. 53138806

Gene Structure 1890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCTGGGTCTTCTTCGTCTTCATGGAAAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACTCTCTCCAAGATCATCAAAGTAACAAGAAGCATAAACTAGAAGATAGCGACGAAGATATGTTCACCGTTCCGGACGTCGAGGCTATACCGCCTGATGATAATCCCATTAGCACTTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACCCTGGGGAAATTGGCCTTTCGGGCAAACGCCGCAGAGGGCGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGACCCTCATTAACGAAAACACCATGCTTCGAAAGGTTCTTATGAACACAAGGCCAAAGGTGGACGAAAGCATAGAGCAAAAGCAGGATCGATCGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

182

Amino Acids

20.72

Weight (kDa)

9.45

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	101 - 160	5.6e-13	bZIP transcription factor
bZIP_2	PF07716	104 - 152	1.1e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	2 cut(s)	182, 277
AclWI	GGATC	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	247, 387
AluBI	AGCT	2 cut(s)	32, 84
AluI	AGCT	2 cut(s)	32, 84
AlwI	GGATC	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	2 cut(s)	259, 497
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	148, 208
AsuII	TTCGAA	1 cut(s)	475
BbsI	GAAGAC	3 cut(s)	30, 39, 319
BciT130I	CCWGG	2 cut(s)	249, 389
BfaI	CTAG	4 cut(s)	9, 81, 131, 234
BfmI	CTRYAG	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	249, 389
BmrFI	CCNGG	2 cut(s)	249, 389
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	3 cut(s)	30, 39, 319
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	247, 248, 402
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	249, 389
BseCI	ATCGAT	1 cut(s)	535
BseDI	CCNNGG	3 cut(s)	247, 248, 402
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	261, 499
BshVI	ATCGAT	1 cut(s)	535
BsiEI	CGRYCG	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	363
BsnI	GGCC	2 cut(s)	261, 499
Bsp119I	TTCGAA	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	103, 441, 532, 536
BspACI	CCGC	2 cut(s)	182, 277
BspANI	GGCC	2 cut(s)	261, 499
BspDI	ATCGAT	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	163
BspPI	GGATC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	247, 248, 402
BssMI	GATC	4 cut(s)	103, 441, 532, 536
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	249, 389
Bst4CI	ACNGT	2 cut(s)	160, 214
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	106, 444, 535, 539
BstMBI	GATC	4 cut(s)	103, 441, 532, 536
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 276, 353
BstNI	CCWGG	2 cut(s)	249, 389
BstSCI	CCNGG	2 cut(s)	247, 387
BstSFI	CTRYAG	1 cut(s)	210
BstV2I	GAAGAC	3 cut(s)	30, 39, 319
BstX2I	RGATCY	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	261, 499
BsuTUI	ATCGAT	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	535
CviAII	CATG	2 cut(s)	51, 469
CviJI	RGCY	7 cut(s)	32, 84, 176, 261, 356, 401, 499
CviKI_1	RGCY	7 cut(s)	32, 84, 176, 261, 356, 401, 499
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	4 cut(s)	105, 443, 534, 538
DpnII	GATC	4 cut(s)	103, 441, 532, 536
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	247, 387
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	54, 472
FaiI	YATR	7 cut(s)	52, 126, 152, 179, 470, 488, 518
FatI	CATG	2 cut(s)	50, 468
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	4 cut(s)	9, 81, 131, 234
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	261, 499
HapII	CCGG	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	54, 472
HinfI	GANTC	3 cut(s)	19, 315, 392
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	148, 208
Hpy166II	GTNNAC	3 cut(s)	156, 376, 508
Hpy188III	TCNNGA	3 cut(s)	164, 396, 445
Hpy8I	GTNNAC	3 cut(s)	156, 376, 508
Hpy99I	CGWCG	2 cut(s)	146, 173
HpyCH4III	ACNGT	2 cut(s)	160, 214
HpyCH4IV	ACGT	2 cut(s)	168, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 276, 353
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	168, 378
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	54, 472
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	103, 441, 532, 536
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	18, 177, 198, 234, 261, 374, 401, 515
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	4 cut(s)	9, 81, 131, 234
MaeII	ACGT	2 cut(s)	168, 378
MaeIII	GTNAC	2 cut(s)	113, 214
MalI	GATC	4 cut(s)	105, 443, 534, 538
MboI	GATC	4 cut(s)	103, 441, 532, 536
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 146, 158, 324, 446
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	2 cut(s)	255, 421
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	99, 166, 275, 406, 461
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	456, 543
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	249, 389
MvaI	CCWGG	2 cut(s)	249, 389
MwoI	GCNNNNNNNGC	3 cut(s)	267, 276, 353
NdeII	GATC	4 cut(s)	103, 441, 532, 536
NlaIII	CATG	2 cut(s)	54, 472
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	475
PasI	CCCWGGG	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	19, 392
PkrI	GCNGC	1 cut(s)	278
Ple19I	CGATCG	1 cut(s)	539
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	247, 387
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	2 cut(s)	247, 387
PsuI	RGATCY	1 cut(s)	441
PvuI	CGATCG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	456, 543
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	103, 441, 532, 536
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	249, 389
SetI	ASST	9 cut(s)	34, 62, 86, 171, 375, 381, 390, 483, 507
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	475
Sse9I	AATT	2 cut(s)	255, 421
SsiI	CCGC	2 cut(s)	182, 277
SspMI	CTAG	4 cut(s)	9, 81, 131, 234
StyD4I	CCNGG	2 cut(s)	247, 387
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	160, 214
TaiI	ACGT	2 cut(s)	171, 381
TaqI	TCGA	5 cut(s)	171, 310, 446, 475, 535
TasI	AATT	2 cut(s)	255, 421
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	19, 392
Tru1I	TTAA	2 cut(s)	456, 543
Tru9I	TTAA	2 cut(s)	456, 543
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	39, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	4 cut(s)	9, 81, 131, 234
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.