Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Reverse (-)

10074404 .. 10076573

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1132200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCAGTCCCAATCAGAGCAGGAGATGGTGAAGCCAAAAATCCGATGTTATCAATATCCTCCTCCTCCTCCTCCAGTTTGGAACAACCTCAGCGGCAGCCATCTGGTTCTTCTTCCTTGAAGCTTCCTCATCCTTCTCTTCTTCTTCATAGTAACAACAAGAACAGTAACAAACTAGAAGTGAGCGATGAAGATATGTTCATGGTTCCGGACGTGGAGGCGTTACGTCCTCCCAATAATAGTATTAATAATGCGGCCTCAACAATCGCCAATGCCACCAGTAACAACAACCCAGATGCCCAGTCTGGCTTTCCGGCCAAGCGCCACCGAGGCCGAAACCTGGTCGATAAGGAGTACAGGCGGCTCAAGAGATTGCTAAGGAACAGGGTGTCTGCTCAACAAGCCCGGGAGAGGAAAAAGATTTACGTCAACGATCTGGAATCAAGAGCCAAAGAATTGGAGGATGGGAATTTAAAGTTGGAAGAGAAGATATCTACGGTTGTTAATGAAAACGCCATGCTTCGAAAGGTTCTTATGAACACAAGGCCAAAAGTAGACGAAGGTATTGAACAAAAGCAAGGATCAGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

198

Amino Acids

21.93

Weight (kDa)

9.79

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	117 - 176	8.6e-12	bZIP transcription factor
bZIP_2	PF07716	120 - 167	3e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	555
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	3 cut(s)	94, 254, 361
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	340, 411
AgsI	TTSAA	2 cut(s)	121, 569
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AlwI	GGATC	1 cut(s)	589
Ama87I	CYCGRG	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	4 cut(s)	255, 315, 331, 545
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	469
AseI	ATTAAT	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	324
AsuC2I	CCSGG	2 cut(s)	406, 407
AsuHPI	GGTGA	1 cut(s)	41
AsuII	TTCGAA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	3 cut(s)	20, 109, 458
BciT130I	CCWGG	1 cut(s)	341
BcnI	CCSGG	2 cut(s)	406, 407
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	330
BisI	GCNGC	4 cut(s)	95, 98, 255, 362
BlsI	GCNGC	4 cut(s)	96, 99, 256, 363
Bme1390I	CCNGG	3 cut(s)	341, 406, 407
BmeT110I	CYCGRG	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	341, 406, 407
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	2 cut(s)	90, 377
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	2 cut(s)	406, 407
BsaJI	CCNNGG	2 cut(s)	328, 405
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 411
Bse1I	ACTGG	3 cut(s)	75, 279, 301
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	328, 405
BseGI	GGATG	2 cut(s)	130, 469
BseLI	CCNNNNNNNGG	2 cut(s)	340, 411
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	75, 279, 301
BseRI	GAGGAG	4 cut(s)	52, 55, 58, 61
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	4 cut(s)	257, 317, 333, 547
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	209, 314, 406
BslI	CCNNNNNNNGG	2 cut(s)	340, 411
BsnI	GGCC	4 cut(s)	257, 317, 333, 547
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	523
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	433, 581
BspACI	CCGC	3 cut(s)	94, 254, 361
BspANI	GGCC	4 cut(s)	257, 317, 333, 547
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	589
BspT104I	TTCGAA	1 cut(s)	523
BsrI	ACTGG	3 cut(s)	75, 279, 301
BssECI	CCNNGG	2 cut(s)	328, 405
BssMI	GATC	2 cut(s)	433, 581
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	167, 499
Bst6I	CTCTTC	2 cut(s)	144, 477
BstBI	TTCGAA	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	90, 377
BstF5I	GGATG	2 cut(s)	130, 469
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	436, 584
BstMBI	GATC	2 cut(s)	433, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 401
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	339, 404, 405
BstV1I	GCAGC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	257, 317, 333, 547
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	130, 469
CfoI	GCGC	1 cut(s)	324
Cfr9I	CCCGGG	1 cut(s)	405
CsiI	ACCWGGT	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	202, 517
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	90, 377
DpnI	GATC	2 cut(s)	435, 583
DpnII	GATC	2 cut(s)	433, 581
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	144, 477
EarI	CTCTTC	2 cut(s)	144, 477
Eco32I	GATATC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	492
FaeI	CATG	2 cut(s)	205, 520
FaiI	YATR	5 cut(s)	150, 197, 203, 518, 536
FatI	CATG	2 cut(s)	201, 516
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	4 cut(s)	95, 98, 255, 362
FokI	GGATG	2 cut(s)	117, 476
Fsp4HI	GCNGC	4 cut(s)	95, 98, 255, 362
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	95, 98, 255, 362
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	4 cut(s)	257, 317, 333, 547
HapII	CCGG	3 cut(s)	209, 314, 406
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	205, 520
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	3 cut(s)	209, 314, 406
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	430, 556
Hpy188I	TCNGA	2 cut(s)	17, 45
Hpy188III	TCNNGA	4 cut(s)	209, 367, 437, 444
Hpy8I	GTNNAC	2 cut(s)	430, 556
HpyAV	CCTTC	2 cut(s)	144, 554
HpyCH4III	ACNGT	2 cut(s)	167, 499
HpyCH4IV	ACGT	3 cut(s)	213, 226, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 401
HpyF3I	CTNAG	2 cut(s)	90, 377
HpySE526I	ACGT	3 cut(s)	213, 226, 426
Hsp92II	CATG	2 cut(s)	205, 520
HspAI	GCGC	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	433, 581
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	286
MabI	ACCWGGT	1 cut(s)	339
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	213, 226, 426
MaeIII	GTNAC	4 cut(s)	152, 167, 222, 281
MalI	GATC	2 cut(s)	435, 583
MboI	GATC	2 cut(s)	433, 581
MboII	GAAGA	8 cut(s)	102, 105, 131, 134, 137, 203, 494, 499
MluCI	AATT	2 cut(s)	455, 469
MmeI	TCCRAC	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	4 cut(s)	246, 473, 504, 588
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	3 cut(s)	209, 314, 406
MspR9I	CCNGG	3 cut(s)	341, 406, 407
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	330, 401
NciI	CCSGG	2 cut(s)	406, 407
NdeII	GATC	2 cut(s)	433, 581
NlaIII	CATG	2 cut(s)	205, 520
NlaIV	GGNNCC	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	96, 99, 256, 363
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	207
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	4 cut(s)	246, 473, 504, 588
SatI	GCNGC	4 cut(s)	95, 98, 255, 362
Sau3AI	GATC	2 cut(s)	433, 581
ScrFI	CCNGG	3 cut(s)	341, 406, 407
SetI	ASST	8 cut(s)	91, 126, 216, 229, 342, 429, 531, 565
SexAI	ACCWGGT	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	523
SmaI	CCCGGG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	455, 469
SsiI	CCGC	3 cut(s)	94, 254, 361
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	3 cut(s)	339, 404, 405
TaaI	ACNGT	2 cut(s)	167, 499
TaiI	ACGT	3 cut(s)	216, 229, 429
TaqI	TCGA	2 cut(s)	345, 523
TasI	AATT	2 cut(s)	455, 469
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	3 cut(s)	97, 257, 364
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	4 cut(s)	246, 473, 504, 588
Tru9I	TTAA	4 cut(s)	246, 473, 504, 588
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	137, 190, 204, 522, 551
TspMI	CCCGGG	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	469
XmaI	CCCGGG	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.