Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Reverse (-)

38058351 .. 38059543

Gene Structure 1193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTTTGAAGGATTATTCTGGTGAGAAAATACTGTTGAAGCTTGGGCCCTTTGGATCAGAACGCGGAGGGAAAGGTTTTGATGATGGAGCTCATTCAACAGTCAGGCAATTGAATATATATGATGACAACGGGAGCTCATTTTGGTCAGACAAGCATGGTGTTGGGACAGGGTCTGACCCTATTGACGAGATTCAATATGATGGCAACGAGATCTCATACCGTACTGACACGATCAAGCTTGATTATCCGTACGAATATCTGATTTCAGTTCATGGAACATATTTTAAGTTCTGGCCCAGTATTTGCTCCCTTACTTTTAGGAGCAACAAGAAAAGTTACGGACCATATGGAAACAAGAAAAGTTACGGACCATATGATGAAGGCAAGCAGGATAAGTATTTTTCAATCCAACCACCTGGGAATATGATTGTCGGCTTTCATGGTAGGGCTTGTGAGTATATGGGTATCTGTGCAATAGGAGCTTACCTGAAACCTATTGATCATCATTATCAGAATAAAAAGTACAATCTCGATGTCATGCCGGCATTACCAAAACCGTCAAATCCTCTGCGTCAAGCTAGATATCCTTCTCAGACCAACCTCAGAAACAAACAAGATGACGGCGACGATGACAAACAATCAACATACACAATTGCCGGTAACCAAGTCAACGGAAACGAGGGCGACCGGAATGGAAATTTCGTTGTTGGAAATAACATTAACATTATTTACATTTTACACCCTGGACTATGGCGGAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

255

Amino Acids

28.79

Weight (kDa)

7.04

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	15 - 163	7.4e-20	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 757
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	700
AfaI	GTAC	3 cut(s)	226, 254, 527
AgsI	TTSAA	6 cut(s)	10, 40, 99, 115, 197, 408
AjnI	CCWGG	2 cut(s)	418, 745
AluBI	AGCT	6 cut(s)	43, 92, 138, 241, 485, 581
AluI	AGCT	6 cut(s)	43, 92, 138, 241, 485, 581
Alw21I	GWGCWC	2 cut(s)	94, 140
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	47, 296
ApaI	GGGCCC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	700
AspS9I	GGNCC	5 cut(s)	47, 48, 297, 344, 371
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	344, 371
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	3 cut(s)	51, 94, 140
Bbv12I	GWGCWC	2 cut(s)	94, 140
BccI	CCATC	2 cut(s)	80, 197
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	420, 747
BclI	TGATCA	1 cut(s)	502
BfaI	CTAG	1 cut(s)	582
BglII	AGATCT	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	420, 747
Bme18I	GGWCC	2 cut(s)	344, 371
BmgT120I	GGNCC	5 cut(s)	47, 48, 297, 344, 371
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	420, 747
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	419, 745
BsaWI	WCCGGW	1 cut(s)	690
Bse118I	RCCGGY	2 cut(s)	544, 659
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	420, 747
BseDI	CCNNGG	2 cut(s)	419, 745
BseMII	CTCAG	2 cut(s)	608, 619
BseNI	ACTGG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	2 cut(s)	49, 298
BsiEI	CGRYCG	1 cut(s)	691
BsiHKAI	GWGCWC	2 cut(s)	94, 140
BsiSI	CCGG	3 cut(s)	545, 660, 691
BsiWI	CGTACG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	49, 298
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	51, 94, 140
Bsp143I	GATC	4 cut(s)	56, 213, 234, 502
BspACI	CCGC	2 cut(s)	66, 757
BspANI	GGCC	2 cut(s)	49, 298
BspCNI	CTCAG	2 cut(s)	607, 618
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	544, 659
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	2 cut(s)	544, 659
BssECI	CCNNGG	2 cut(s)	419, 745
BssMI	GATC	4 cut(s)	56, 213, 234, 502
Bst2UI	CCWGG	2 cut(s)	420, 747
Bst4CI	ACNGT	4 cut(s)	36, 103, 224, 561
BstC8I	GCNNGC	2 cut(s)	389, 546
BstDEI	CTNAG	2 cut(s)	594, 605
BstEII	GGTNACC	1 cut(s)	662
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	59, 216, 237, 505
BstMBI	GATC	4 cut(s)	56, 213, 234, 502
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	420, 747
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	418, 745
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	49, 298
Cac8I	GCNNGC	2 cut(s)	389, 546
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	544, 659
Cfr13I	GGNCC	5 cut(s)	47, 48, 297, 344, 371
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	3 cut(s)	225, 253, 526
CviAII	CATG	4 cut(s)	158, 275, 443, 541
CviQI	GTAC	3 cut(s)	225, 253, 526
DdeI	CTNAG	2 cut(s)	594, 605
DpnI	GATC	4 cut(s)	58, 215, 236, 504
DpnII	GATC	4 cut(s)	56, 213, 234, 502
Ecl136II	GAGCTC	2 cut(s)	92, 138
Eco24I	GRGCYC	3 cut(s)	51, 94, 140
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	2 cut(s)	344, 371
Eco53kI	GAGCTC	2 cut(s)	92, 138
Eco91I	GGTNACC	1 cut(s)	662
EcoICRI	GAGCTC	2 cut(s)	92, 138
EcoO109I	RGGNCCY	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	662
EcoRII	CCWGG	2 cut(s)	418, 745
EcoRV	GATATC	1 cut(s)	587
EcoT38I	GRGCYC	3 cut(s)	51, 94, 140
FaeI	CATG	4 cut(s)	161, 278, 446, 544
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	4 cut(s)	157, 274, 442, 540
FauNDI	CATATG	2 cut(s)	349, 376
FbaI	TGATCA	1 cut(s)	502
FriOI	GRGCYC	3 cut(s)	51, 94, 140
FspBI	CTAG	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	49, 298
HapII	CCGG	3 cut(s)	545, 660, 691
HgaI	GACGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	161, 278, 446, 544
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	2 cut(s)	41, 239
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	3 cut(s)	545, 660, 691
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	7 cut(s)	61, 151, 178, 264, 516, 597, 608
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	673
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	3 cut(s)	4, 377, 600
HpyCH4III	ACNGT	4 cut(s)	36, 103, 224, 561
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	594, 605
Hsp92II	CATG	4 cut(s)	161, 278, 446, 544
KroI	GCCGGC	1 cut(s)	544
KroNI	GCCGGC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	56, 213, 234, 502
LmnI	GCTCC	5 cut(s)	89, 135, 314, 324, 482
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	338, 365, 662
MalI	GATC	4 cut(s)	58, 215, 236, 504
MboI	GATC	4 cut(s)	56, 213, 234, 502
MfeI	CAATTG	2 cut(s)	110, 654
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	51, 94, 140
MluCI	AATT	3 cut(s)	110, 654, 700
MmeI	TCCRAC	2 cut(s)	436, 691
MnlI	CCTC	4 cut(s)	62, 579, 614, 676
MroNI	GCCGGC	1 cut(s)	544
MseI	TTAA	3 cut(s)	288, 723, 766
MspI	CCGG	3 cut(s)	545, 660, 691
MspR9I	CCNGG	2 cut(s)	420, 747
MunI	CAATTG	2 cut(s)	110, 654
MvaI	CCWGG	2 cut(s)	420, 747
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	482
NaeI	GCCGGC	1 cut(s)	546
NdeI	CATATG	2 cut(s)	349, 376
NdeII	GATC	4 cut(s)	56, 213, 234, 502
NgoMIV	GCCGGC	1 cut(s)	544
NlaIII	CATG	4 cut(s)	161, 278, 446, 544
NlaIV	GGNNCC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	193
Pfl23II	CGTACG	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	172
Psp124BI	GAGCTC	2 cut(s)	94, 140
Psp6I	CCWGG	2 cut(s)	418, 745
PspEI	GGTNACC	1 cut(s)	662
PspGI	CCWGG	2 cut(s)	418, 745
PspLI	CGTACG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	5 cut(s)	47, 48, 297, 344, 371
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	3 cut(s)	226, 254, 527
RsaNI	GTAC	3 cut(s)	225, 253, 526
SacI	GAGCTC	2 cut(s)	94, 140
SaqAI	TTAA	3 cut(s)	288, 723, 766
Sau3AI	GATC	4 cut(s)	56, 213, 234, 502
Sau96I	GGNCC	5 cut(s)	47, 48, 297, 344, 371
ScrFI	CCNGG	2 cut(s)	420, 747
SduI	GDGCHC	3 cut(s)	51, 94, 140
SinI	GGWCC	2 cut(s)	344, 371
Sse9I	AATT	3 cut(s)	110, 654, 700
SsiI	CCGC	2 cut(s)	66, 757
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	2 cut(s)	94, 140
StyD4I	CCNGG	2 cut(s)	418, 745
TaaI	ACNGT	4 cut(s)	36, 103, 224, 561
TaqI	TCGA	1 cut(s)	534
TasI	AATT	3 cut(s)	110, 654, 700
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	288, 723, 766
Tru9I	TTAA	3 cut(s)	288, 723, 766
TspDTI	ATGAA	3 cut(s)	263, 396, 431
TspGWI	ACGGA	4 cut(s)	240, 357, 384, 690
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	344, 371
XapI	RAATTY	1 cut(s)	700
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.