Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

59484018 .. 59485503

Gene Structure 1486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCCGGGTCTTCTTCGTCTTCATGGAGAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACTCTCTCCAAGATCATCAAAGTAACACGAAGCATAAACTAGACGTTGATTCATTTTGGTCATGGGATGATGATGATGATGATGATGATGATGGTAATGTTAATCCAGAAGATAGCGACGAAGATATGTTCACCGTTCCGGACGTCGAGGCTACACCGCCTGATGATAATCCCATTAGCACCTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACCCTGGGGAAATTGGCCTTTCGGGCAAACGCCGCAGAGGGCGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACGTCAATGACCTGGAATTAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGACCCTCGTTAACGAAAACACCATGCTTCGAAAGGTTCTCATGAATACAAGGCCAAAAGTGGACGAAAGCATAGAGCAAAAGCAGGATCGATCGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

204

Amino Acids

23.26

Weight (kDa)

5.23

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	123 - 182	2e-11	bZIP transcription factor
bZIP_2	PF07716	126 - 175	1.2e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	2 cut(s)	248, 343
AclWI	GGATC	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	313, 453
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
AlwI	GGATC	1 cut(s)	606
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	2 cut(s)	325, 563
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	214, 274
AsuII	TTCGAA	1 cut(s)	541
BbsI	GAAGAC	3 cut(s)	30, 39, 385
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	315, 455
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	4 cut(s)	9, 81, 131, 300
BfmI	CTRYAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	34, 315, 455
BmrFI	CCNGG	3 cut(s)	34, 315, 455
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	3 cut(s)	30, 39, 385
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	313, 314, 468
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	315, 455
BseCI	ATCGAT	1 cut(s)	601
BseDI	CCNNGG	3 cut(s)	313, 314, 468
BseGI	GGATG	2 cut(s)	163, 487
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	327, 565
BshVI	ATCGAT	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	33, 230
BslI	CCNNNNNNNGG	1 cut(s)	429
BsnI	GGCC	2 cut(s)	327, 565
Bsp119I	TTCGAA	1 cut(s)	541
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	103, 507, 598, 602
BspACI	CCGC	2 cut(s)	248, 343
BspANI	GGCC	2 cut(s)	327, 565
BspDI	ATCGAT	1 cut(s)	601
BspEI	TCCGGA	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	313, 314, 468
BssMI	GATC	4 cut(s)	103, 507, 598, 602
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	315, 455
Bst4CI	ACNGT	2 cut(s)	226, 280
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	163, 487
BstKTI	GATC	4 cut(s)	106, 510, 601, 605
BstMBI	GATC	4 cut(s)	103, 507, 598, 602
BstMCI	CGRYCG	1 cut(s)	605
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 342, 419
BstNI	CCWGG	2 cut(s)	315, 455
BstSCI	CCNGG	3 cut(s)	32, 313, 453
BstSFI	CTRYAG	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	30, 39, 385
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	327, 565
BsuTUI	ATCGAT	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	163, 487
CciI	TCATGA	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	601
CviAII	CATG	4 cut(s)	51, 153, 535, 553
CviJI	RGCY	7 cut(s)	32, 84, 242, 327, 422, 467, 565
CviKI_1	RGCY	7 cut(s)	32, 84, 242, 327, 422, 467, 565
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	4 cut(s)	105, 509, 600, 604
DpnII	GATC	4 cut(s)	103, 507, 598, 602
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	313, 453
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	4 cut(s)	54, 156, 538, 556
FaiI	YATR	7 cut(s)	52, 126, 154, 218, 536, 554, 584
FatI	CATG	4 cut(s)	50, 152, 534, 552
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	2 cut(s)	170, 494
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	4 cut(s)	9, 81, 131, 300
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	327, 565
HapII	CCGG	2 cut(s)	33, 230
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	54, 156, 538, 556
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	19, 140, 381
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	33, 230
HphI	GGTGA	2 cut(s)	214, 274
Hpy166II	GTNNAC	4 cut(s)	222, 442, 523, 574
Hpy188III	TCNNGA	4 cut(s)	197, 230, 511, 553
Hpy8I	GTNNAC	4 cut(s)	222, 442, 523, 574
Hpy99I	CGWCG	2 cut(s)	212, 239
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	226, 280
HpyCH4IV	ACGT	3 cut(s)	135, 234, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 342, 419
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	3 cut(s)	135, 234, 444
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	54, 156, 538, 556
Kpn2I	TCCGGA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	103, 507, 598, 602
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	46, 210, 243, 264, 300, 327, 440, 467, 581
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	4 cut(s)	9, 81, 131, 300
MaeII	ACGT	3 cut(s)	135, 234, 444
MaeIII	GTNAC	2 cut(s)	113, 280
MalI	GATC	4 cut(s)	105, 509, 600, 604
MboI	GATC	4 cut(s)	103, 507, 598, 602
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 212, 224, 390, 512
MflI	RGATCY	1 cut(s)	507
MluCI	AATT	3 cut(s)	321, 458, 487
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	6 cut(s)	99, 232, 283, 341, 472, 527
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	4 cut(s)	192, 461, 522, 609
MspI	CCGG	2 cut(s)	33, 230
MspR9I	CCNGG	3 cut(s)	34, 315, 455
MvaI	CCWGG	2 cut(s)	315, 455
MwoI	GCNNNNNNNGC	3 cut(s)	333, 342, 419
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	4 cut(s)	103, 507, 598, 602
NlaIII	CATG	4 cut(s)	54, 156, 538, 556
NmuCI	GTSAC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	541
PagI	TCATGA	1 cut(s)	552
PasI	CCCWGGG	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	19, 140
PkrI	GCNGC	1 cut(s)	344
Ple19I	CGATCG	1 cut(s)	605
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	313, 453
PspGI	CCWGG	2 cut(s)	313, 453
PsuI	RGATCY	1 cut(s)	507
PvuI	CGATCG	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	192, 461, 522, 609
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	4 cut(s)	103, 507, 598, 602
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	34, 315, 455
SetI	ASST	9 cut(s)	62, 86, 138, 237, 275, 441, 447, 456, 549
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	541
Sse9I	AATT	3 cut(s)	321, 458, 487
SsiI	CCGC	2 cut(s)	248, 343
SspMI	CTAG	4 cut(s)	9, 81, 131, 300
StyD4I	CCNGG	3 cut(s)	32, 313, 453
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	226, 280
TaiI	ACGT	3 cut(s)	138, 237, 447
TaqI	TCGA	5 cut(s)	237, 376, 512, 541, 601
TasI	AATT	3 cut(s)	321, 458, 487
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	19, 140
Tru1I	TTAA	4 cut(s)	192, 461, 522, 609
Tru9I	TTAA	4 cut(s)	192, 461, 522, 609
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	39, 132, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	4 cut(s)	9, 81, 131, 300
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.