Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Reverse (-)

38084452 .. 38088567

Gene Structure 4116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTTCCTAGTGGTTATCTGATTCGACCGTGTGAGGGTGGAGGATCAATCATTCATATTGTTGACCACCTGAACCTTGAGGCTTGGAGTGTGCCGGAAGTGCTGCGACCGCTTTATGAATCGTCCAAAGTGGTAGCACAAAAAAGGACTATTGCGTGCTGCAGTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTGATGAAGCATTTATGTCAGATTATGTTTTAATCCTCATTTTAGAACAAGTTCAGTCTGGCAAGGCTTCTGATAAGCTGCTGTTTACGTACTTCCCTTTCCTGGTGTTTTGGCCATACTACATGGGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

8.27

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	1 - 55	1.1e-12	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	52, 166
AcoI	YGGCCR	1 cut(s)	356
AfaI	GTAC	2 cut(s)	202, 335
AfiI	CCNNNNNNNGG	2 cut(s)	35, 346
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	179, 184, 322
AluI	AGCT	3 cut(s)	179, 184, 322
AlwI	GGATC	2 cut(s)	52, 166
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	103, 159, 322
Asp700I	GAANNNNTTC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	90, 146, 309
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	3 cut(s)	104, 160, 323
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	3 cut(s)	105, 161, 324
Bme1390I	CCNGG	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 346
BseBI	CCWGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	35, 346
BseXI	GCAGC	3 cut(s)	90, 146, 309
BseYI	CCCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	2 cut(s)	29, 110
BshFI	GGCC	1 cut(s)	358
BsiEI	CGRYCG	2 cut(s)	29, 110
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	35, 346
BsnI	GGCC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	44, 171, 225
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	2 cut(s)	52, 166
BssMI	GATC	3 cut(s)	44, 171, 225
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	47, 174, 228
BstMBI	GATC	3 cut(s)	44, 171, 225
BstMCI	CGRYCG	2 cut(s)	29, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 109
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	160
BstSNI	TACGTA	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	90, 146, 309
BsuRI	GGCC	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	201, 334
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	7 cut(s)	83, 179, 184, 311, 322, 358, 372
CviKI_1	RGCY	7 cut(s)	83, 179, 184, 311, 322, 358, 372
CviQI	GTAC	2 cut(s)	201, 334
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	46, 173, 227
DpnII	GATC	3 cut(s)	44, 171, 225
EaeI	YGGCCR	1 cut(s)	356
Eco105I	TACGTA	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	370
FaiI	YATR	6 cut(s)	57, 117, 260, 270, 361, 368
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	104, 160, 323
Fsp4HI	GCNGC	3 cut(s)	104, 160, 323
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	3 cut(s)	104, 160, 323
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	22, 119
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	64, 330
Hpy188I	TCNGA	4 cut(s)	21, 247, 265, 316
Hpy8I	GTNNAC	2 cut(s)	64, 330
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	162, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 109
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	44, 171, 225
LpnPI	CCDG	6 cut(s)	83, 108, 189, 288, 332, 359
Lsp1109I	GCAGC	3 cut(s)	90, 146, 309
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	332
MalI	GATC	3 cut(s)	46, 173, 227
MboI	GATC	3 cut(s)	44, 171, 225
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	2 cut(s)	209, 217
MluNI	TGGCCA	1 cut(s)	358
MnlI	CCTC	5 cut(s)	28, 35, 73, 186, 290
Mox20I	TGGCCA	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	358
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	100, 109
NdeII	GATC	3 cut(s)	44, 171, 225
NlaIII	CATG	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	22, 119
PkrI	GCNGC	3 cut(s)	105, 161, 324
Ppu21I	YACGTR	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	202, 335
RsaNI	GTAC	2 cut(s)	201, 334
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	104, 160, 323
Sau3AI	GATC	3 cut(s)	44, 171, 225
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	6 cut(s)	72, 78, 181, 186, 324, 335
SfcI	CTRYAG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SnaBI	TACGTA	1 cut(s)	333
Sse9I	AATT	2 cut(s)	209, 217
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	209, 217
TfiI	GAWTC	2 cut(s)	22, 119
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	103, 159, 322
TspDTI	ATGAA	3 cut(s)	44, 132, 264
TspRI	CASTG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.