Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

24796808 .. 24798685

Gene Structure 1878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTTCCAGTGTGGAGAATCAGCAGCAAGCTGGGTCTTCCTCGTCTTCATGGAGAAGATTCAATGCCAACAACTCTTCTAGCTCTCCTCACTCTCTCCATGATCATGACAAGAAGCATAAACTAGAAGATAGCGATGAAGATATGTTCACAGTTCCAGACGTCGAGGCTATACGGCCTGATGATAATCCCATTAGCACATCCACAGTCACCAACAACAATGCCACGAGCAAGAACGATCCTGCGGAAACTGGCTTTTCCGGTAAACGCCGCAGAGGGCGGAACCCGGTAGATAAGGAGTATCGACGACTCAAAAGATTGCTAAGAAACAGAGTGTCTGCTCAACAAGCCCGTGAGAGGAAAAAGGTATACGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGACCCTCATCAACGAAAACACCATGCTGCGAAAGGTTCTTATGAATACAAGGCCAAAAGTTGATGACAGCATAGAGCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

175

Amino Acids

19.88

Weight (kDa)

9.15

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	99 - 158	1e-12	bZIP transcription factor
bZIP_2	PF07716	102 - 150	9.8e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	3 cut(s)	245, 271, 280
AclWI	GGATC	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	32, 84
AluI	AGCT	2 cut(s)	32, 84
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	176, 491
ApeKI	GCWGC	2 cut(s)	25, 466
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	202
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	30, 39
BbvI	GCAGC	2 cut(s)	37, 453
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	287
BfaI	CTAG	2 cut(s)	81, 125
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	3 cut(s)	26, 271, 467
BlsI	GCNGC	3 cut(s)	27, 272, 468
Bme1390I	CCNGG	2 cut(s)	287, 383
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	287, 383
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	2 cut(s)	30, 39
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	9, 256
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	200, 415
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	9, 256
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	37, 453
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	178, 493
BsiSI	CCGG	2 cut(s)	261, 287
BslI	CCNNNNNNNGG	1 cut(s)	357
BsnI	GGCC	2 cut(s)	178, 493
Bsp143I	GATC	3 cut(s)	103, 238, 435
BspACI	CCGC	3 cut(s)	245, 271, 280
BspANI	GGCC	2 cut(s)	178, 493
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	9, 256
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	103, 238, 435
BssNAI	GTATAC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	154, 208
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	200, 415
BstKTI	GATC	3 cut(s)	106, 241, 438
BstMBI	GATC	3 cut(s)	103, 238, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	285, 381
BstV1I	GCAGC	2 cut(s)	37, 453
BstV2I	GAAGAC	2 cut(s)	30, 39
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	435
BstZ17I	GTATAC	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	178, 493
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	200, 415
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	106
CviAII	CATG	4 cut(s)	51, 101, 107, 463
CviJI	RGCY	8 cut(s)	32, 84, 170, 178, 255, 350, 395, 493
CviKI_1	RGCY	8 cut(s)	32, 84, 170, 178, 255, 350, 395, 493
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	105, 240, 437
DpnII	GATC	3 cut(s)	103, 238, 435
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	54, 104, 110, 466
FatI	CATG	4 cut(s)	50, 100, 106, 462
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	26, 271, 467
FokI	GGATG	2 cut(s)	187, 422
Fsp4HI	GCNGC	3 cut(s)	26, 271, 467
FspBI	CTAG	2 cut(s)	81, 125
GluI	GCNGC	3 cut(s)	26, 271, 467
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	178, 493
HapII	CCGG	2 cut(s)	261, 287
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	54, 104, 110, 466
HinfI	GANTC	4 cut(s)	19, 60, 309, 386
HpaII	CCGG	2 cut(s)	261, 287
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	150, 266, 370
Hpy188III	TCNNGA	4 cut(s)	107, 158, 390, 439
Hpy8I	GTNNAC	3 cut(s)	150, 266, 370
Hpy99I	CGWCG	2 cut(s)	167, 309
HpyCH4III	ACNGT	2 cut(s)	154, 208
HpyCH4IV	ACGT	2 cut(s)	162, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	162, 372
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	54, 104, 110, 466
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 238, 435
Lsp1109I	GCAGC	2 cut(s)	37, 453
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	81, 125
MaeII	ACGT	2 cut(s)	162, 372
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	105, 240, 437
MboI	GATC	3 cut(s)	103, 238, 435
MboII	GAAGA	7 cut(s)	30, 39, 69, 69, 140, 152, 440
MflI	RGATCY	1 cut(s)	435
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	52, 99, 160, 269, 351, 400, 455
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	2 cut(s)	261, 287
MspR9I	CCNGG	2 cut(s)	287, 383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	103, 238, 435
NlaIII	CATG	4 cut(s)	54, 104, 110, 466
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	19, 60, 386
PkrI	GCNGC	3 cut(s)	27, 272, 468
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	3 cut(s)	26, 271, 467
Sau3AI	GATC	3 cut(s)	103, 238, 435
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	287, 383
SetI	ASST	7 cut(s)	34, 86, 165, 369, 375, 384, 477
SfaNI	GCATC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	3 cut(s)	245, 271, 280
SspMI	CTAG	2 cut(s)	81, 125
StyD4I	CCNGG	2 cut(s)	285, 381
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	154, 208
TaiI	ACGT	2 cut(s)	165, 375
TaqI	TCGA	3 cut(s)	165, 304, 440
TasI	AATT	1 cut(s)	415
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	19, 60, 386
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	25, 466
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	39, 153, 497
TspRI	CASTG	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	81, 125
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.