Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

51535250 .. 51537195

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCTGGGTCTTCTTCGTCTTCATGGAGAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACTCTCTCCAAGATCATCCAAGTAACAAGAAGCATAAACTAGACGTTGATTCATTTTGGTCATGGGATGATGATGATGATGATGATGATGATGGTAATGTTAATCCAGAAGATAGCGATGAAGATATGTTCACCGTTCCGGACGTCGAGGCTATACCGCCTGATGATAATCCCATTAGCACCTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACCCCGGGGAAATTGGCCTTTCGGGCAAACGCCGCAGAGGGAGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGCAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGAAAAAAGGTTTATGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGACCCTCATTAACGAAAACACCATGCTTCGAAAGGTTCTTATGAATACAAGGCCAAAAGTTGACGAAAGCATAGAGCAAAAGCAGGATCGATCGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

205

Amino Acids

23.34

Weight (kDa)

5.35

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	124 - 183	6.4e-11	bZIP transcription factor
bZIP_2	PF07716	131 - 175	1.7e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	2 cut(s)	248, 343
AclWI	GGATC	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	32, 84
AluI	AGCT	2 cut(s)	32, 84
AlwI	GGATC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	2 cut(s)	325, 566
AsuC2I	CCSGG	2 cut(s)	315, 316
AsuHPI	GGTGA	2 cut(s)	214, 274
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	314
BbsI	GAAGAC	3 cut(s)	30, 39, 385
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	458
BcnI	CCSGG	2 cut(s)	315, 316
BfaI	CTAG	4 cut(s)	9, 81, 131, 300
BfmI	CTRYAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	315, 316, 458
BmeT110I	CYCGRG	1 cut(s)	314
BmrFI	CCNGG	3 cut(s)	315, 316, 458
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	3 cut(s)	30, 39, 385
Bpu10I	CCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	544
BpuMI	CCSGG	2 cut(s)	315, 316
Bsa29I	ATCGAT	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	313, 314, 315, 471
BsaWI	WCCGGW	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	458
BseCI	ATCGAT	1 cut(s)	604
BseDI	CCNNGG	4 cut(s)	313, 314, 315, 471
BseGI	GGATG	3 cut(s)	106, 163, 490
BseJI	GATNNNNATC	1 cut(s)	258
BseYI	CCCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	327, 568
BshVI	ATCGAT	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	230, 315
BsnI	GGCC	2 cut(s)	327, 568
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	103, 510, 601, 605
BspACI	CCGC	2 cut(s)	248, 343
BspANI	GGCC	2 cut(s)	327, 568
BspDI	ATCGAT	1 cut(s)	604
BspEI	TCCGGA	1 cut(s)	229
BspPI	GGATC	1 cut(s)	609
BspT104I	TTCGAA	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	313, 314, 315, 471
BssMI	GATC	4 cut(s)	103, 510, 601, 605
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	226, 280
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	106, 163, 490
BstKTI	GATC	4 cut(s)	106, 513, 604, 608
BstMBI	GATC	4 cut(s)	103, 510, 601, 605
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 342, 422
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	313, 314, 456
BstSFI	CTRYAG	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	30, 39, 385
BstX2I	RGATCY	1 cut(s)	510
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	510
Bsu15I	ATCGAT	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	327, 568
BsuTUI	ATCGAT	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	106, 163, 490
Cfr9I	CCCGGG	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	604
CviAII	CATG	3 cut(s)	51, 153, 538
CviJI	RGCY	7 cut(s)	32, 84, 242, 327, 425, 470, 568
CviKI_1	RGCY	7 cut(s)	32, 84, 242, 327, 425, 470, 568
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	4 cut(s)	105, 512, 603, 607
DpnII	GATC	4 cut(s)	103, 510, 601, 605
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	54, 156, 541
FaiI	YATR	9 cut(s)	52, 126, 154, 218, 245, 447, 539, 557, 587
FatI	CATG	3 cut(s)	50, 152, 537
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	3 cut(s)	93, 170, 497
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	4 cut(s)	9, 81, 131, 300
GluI	GCNGC	1 cut(s)	343
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	327, 568
HapII	CCGG	2 cut(s)	230, 315
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	54, 156, 541
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	4 cut(s)	19, 140, 381, 461
HpaII	CCGG	2 cut(s)	230, 315
HphI	GGTGA	2 cut(s)	214, 274
Hpy166II	GTNNAC	2 cut(s)	222, 577
Hpy188III	TCNNGA	4 cut(s)	197, 230, 465, 514
Hpy8I	GTNNAC	2 cut(s)	222, 577
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	226, 280
HpyCH4IV	ACGT	2 cut(s)	135, 234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 342, 422
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	135, 234
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	54, 156, 541
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	103, 510, 601, 605
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	18, 210, 243, 264, 328, 443, 470, 584
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	4 cut(s)	9, 81, 131, 300
MaeII	ACGT	2 cut(s)	135, 234
MaeIII	GTNAC	2 cut(s)	113, 280
MalI	GATC	4 cut(s)	105, 512, 603, 607
MboI	GATC	4 cut(s)	103, 510, 601, 605
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 212, 224, 390, 515
MflI	RGATCY	1 cut(s)	510
MluCI	AATT	2 cut(s)	321, 490
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	6 cut(s)	99, 232, 283, 341, 475, 530
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	3 cut(s)	192, 525, 612
MspI	CCGG	2 cut(s)	230, 315
MspR9I	CCNGG	3 cut(s)	315, 316, 458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	3 cut(s)	333, 342, 422
NciI	CCSGG	2 cut(s)	315, 316
NdeII	GATC	4 cut(s)	103, 510, 601, 605
NlaIII	CATG	3 cut(s)	54, 156, 541
NmuCI	GTSAC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	19, 140, 461
PkrI	GCNGC	1 cut(s)	344
Ple19I	CGATCG	1 cut(s)	608
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	510
PvuI	CGATCG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	192, 525, 612
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	4 cut(s)	103, 510, 601, 605
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	315, 316, 458
SetI	ASST	9 cut(s)	34, 62, 86, 138, 237, 275, 444, 459, 552
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	544
SmaI	CCCGGG	1 cut(s)	316
Sse9I	AATT	2 cut(s)	321, 490
SsiI	CCGC	2 cut(s)	248, 343
SspMI	CTAG	4 cut(s)	9, 81, 131, 300
StyD4I	CCNGG	3 cut(s)	313, 314, 456
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	226, 280
TaiI	ACGT	2 cut(s)	138, 237
TaqI	TCGA	5 cut(s)	237, 376, 515, 544, 604
TasI	AATT	2 cut(s)	321, 490
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	19, 140, 461
Tru1I	TTAA	3 cut(s)	192, 525, 612
Tru9I	TTAA	3 cut(s)	192, 525, 612
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	39, 132, 225, 572
TspMI	CCCGGG	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmaI	CCCGGG	1 cut(s)	314
XspI	CTAG	4 cut(s)	9, 81, 131, 300
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.