Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009597

Physical Location & Seq

Genomic Coordinates Forward (+)

50368564 .. 50370367

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG281400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCTTCTAGTTTGGAGAATCAGCACCAAGCTGGGTCTTCTTCGTCTTCATGGAAAAGGTTCAATGCCAACAACTCTTCTAGCTCCCCTCACTCTCTCCAAGATCATCAAAGTGACAAGAAGCATAAACTAGAAGATAGCGACGAAGATATGTTCACCGTTCCGGACGTCGAGGCTATACCGCCTGATGATAATCCCATTAGCACCTCTACAGTCACCAACAATAATGCCACTAGCAAGAACAACACTGGGGAAATTGGCCTTTCAGGTAAACGCCGCAGAGGGCGAAACCCCGTAGATAAGGAGTATCGAAGACTCAAAAGATTGCTAAGGAACAGAGTGTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACGTCAATGACCTGGAATCAAGAGCCAAGGAGTTGGAGGATGCCAATTCTAACTTGGAAGAAAAGATCTCGACCCTCATTAATGAAAACACCATGCTTCGAAAGGTGGTGATCGATAAGCTTTCTAGAACTTTTAATCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0010224 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

173

Amino Acids

19.68

Weight (kDa)

9.36

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	101 - 160	7.9e-13	bZIP transcription factor
bZIP_2	PF07716	104 - 152	9.7e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17609 AT3G17609 AT3G17609 AT3G17609
fragaria_vesca	FvH4_4g21800 FvH4_4g21800
malus_domestica	MD16G1132200.v1.1
prunus_persica	Prupe.1G208500_v2.0.a1 Prupe.1G208500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428031
rosa_laevigata	RLG00000007188
rosa_multiflora	Rmu_sc0005263.1_g000006
rosa_roxburghii	Rroxscaffold_5G00369720
rosa_rugosa	Rorug04G0221300.1 Rorug04G0221400 Rorug04G0221500 Rorug04G0221500
rosa_samantha	Rh4AG278700 Rh4BG284100 Rh4CG300000 Rh4DG281400
rosa_wichuraiana	Rw4G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	2 cut(s)	182, 277
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	3 cut(s)	32, 84, 496
AluI	AGCT	3 cut(s)	32, 84, 496
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	148, 208, 496
AsuII	TTCGAA	1 cut(s)	475
BbsI	GAAGAC	3 cut(s)	30, 39, 319
BciT130I	CCWGG	1 cut(s)	389
BfaI	CTAG	5 cut(s)	9, 81, 131, 234, 501
BfmI	CTRYAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	3 cut(s)	30, 39, 319
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	363
BsnI	GGCC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	103, 441, 486
BspACI	CCGC	2 cut(s)	182, 277
BspANI	GGCC	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	103, 441, 486
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	160, 214
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	106, 444, 489
BstMBI	GATC	3 cut(s)	103, 441, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	210
BstV2I	GAAGAC	3 cut(s)	30, 39, 319
BstX2I	RGATCY	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	489
CviAII	CATG	2 cut(s)	51, 469
CviJI	RGCY	7 cut(s)	32, 84, 176, 261, 356, 401, 496
CviKI_1	RGCY	7 cut(s)	32, 84, 176, 261, 356, 401, 496
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	105, 443, 488
DpnII	GATC	3 cut(s)	103, 441, 486
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	54, 472
FaiI	YATR	5 cut(s)	52, 126, 152, 179, 470
FatI	CATG	2 cut(s)	50, 468
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	5 cut(s)	9, 81, 131, 234, 501
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	54, 472
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	19, 315, 392
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	148, 208, 496
Hpy166II	GTNNAC	3 cut(s)	156, 272, 376
Hpy188III	TCNNGA	4 cut(s)	164, 396, 445, 501
Hpy8I	GTNNAC	3 cut(s)	156, 272, 376
Hpy99I	CGWCG	2 cut(s)	146, 173
HpyCH4III	ACNGT	2 cut(s)	160, 214
HpyCH4IV	ACGT	2 cut(s)	168, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	168, 378
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	54, 472
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	103, 441, 486
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	18, 177, 198, 234, 252, 374, 401
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	5 cut(s)	9, 81, 131, 234, 501
MaeII	ACGT	2 cut(s)	168, 378
MaeIII	GTNAC	2 cut(s)	113, 214
MalI	GATC	3 cut(s)	105, 443, 488
MboI	GATC	3 cut(s)	103, 441, 486
MboII	GAAGA	8 cut(s)	30, 33, 39, 69, 146, 158, 324, 446
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	2 cut(s)	255, 421
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	99, 166, 217, 275, 406, 461
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	456, 510
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	3 cut(s)	103, 441, 486
NlaIII	CATG	2 cut(s)	54, 472
NmuCI	GTSAC	2 cut(s)	113, 214
NspV	TTCGAA	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	19, 392
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	456, 510
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	103, 441, 486
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	255, 421
SsiI	CCGC	2 cut(s)	182, 277
SspMI	CTAG	5 cut(s)	9, 81, 131, 234, 501
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	160, 214
TaiI	ACGT	2 cut(s)	171, 381
TaqI	TCGA	5 cut(s)	171, 310, 446, 475, 489
TasI	AATT	2 cut(s)	255, 421
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	19, 392
Tru1I	TTAA	2 cut(s)	456, 510
Tru9I	TTAA	2 cut(s)	456, 510
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	113, 214
Tsp45I	GTSAC	2 cut(s)	113, 214
TspDTI	ATGAA	2 cut(s)	39, 474
TspRI	CASTG	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	456
XbaI	TCTAGA	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	5 cut(s)	9, 81, 131, 234, 501
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.