AT3G17611

Rhomboid family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011374
Physical Location & Seq
Forward (+)
6024795 .. 6026556
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17611.3

Sequence Viewer

Length: 1005 bp
ATGGAGAATTTTGGTGAAGGGAGAAGAAGTGGAGGCGGAATGTTGCCGTTGCTGGCTCTAAGCGCCGTCGCGGAGTACTATAGACTACCGTGGAAACCACCGGTGACGGCGAGTCTCCTGGCCGCGAACACTCTCGTTTATCTCAGGCCGGCGTTTATCGATCCCGTTATTCCTCACATCAGTGAGGTCTGGTTCAATCCTCACCTCATCTTCAAGCATAAGGACTTGAAGCGTTTATTTCTATCAGCGTTCTACCATGTTAACGAGCCTCACTTAGTCTATAACATGATGTCACTTCTCTGGAAAGGTATCAAGCTTGAGACATCAATGGGAAGCAGTGAGTTTGCTTCAATGGTCTTTACTCTTATTGGTATGTCTCAAGGAGTCACATTGTTGTTAGCCAAATCGCTTCTTCTCTTGTTTGACTATGACAGAGCTTACTACAACGAGTATGCGGTTGGGTTCTCGGGTGTTCTCTTTGCTATGAAAGTTGTTCTTAATTCTCAAGCTGAGGATTACTCAAGTGTGTATGGTATCTTGGTTCCAACAAAGTATGCTGCTTGGGCAGAATTGATTCTAGTGCAGATGTTTGTACCTAACGCTTCGTTTCTTGGGCATTTGGGTGGAATCCTTGCTGGTATTATCTATTTGAAGCTGAAAGGTTCTTACTCAGGCTCAGATCCAGTCACTATGGCGGTTAGAGGTGTATCTCGATTGGTGACGTGGCCCTTGAGGTTTCTGAATGGTATGGTTAGGTCTCGGAGAAGGAGGATTACGGGGAGAGGAAGAGTGGGAAGAGGTCAGACTGGGATAGCAGGACCTGGTATTTGGAGATGTCAGTCGTGTACATATGACAATTCTGGTTGGTTAAGTGCTTGCGAGATGTGTGGCTCGGGACGGGCTAGAGGAAATGGATGGTCACTGAATCAGGGACCAGCACTTTCTTCTTCTAATGATCTCCCTTTAGATGAGCTGCGCCGTCGAAGAGTAGAGAGGTTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

334

Amino Acids

37.15

Weight (kDa)

9.76

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 115 - 137 1.3e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 71, 125
AciI CCGC 5 cut(s) 36, 71, 123, 455, 695
AclWI GGATC 2 cut(s) 155, 674
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 3 cut(s) 77, 594, 847
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 5 cut(s) 196, 214, 229, 351, 652
AhdI GACNNNNNGTC 1 cut(s) 111
AjiI CACGTC 1 cut(s) 723
AjnI CCWGG 2 cut(s) 117, 820
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 5 cut(s) 316, 437, 509, 655, 973
AluI AGCT 5 cut(s) 316, 437, 509, 655, 973
Alw26I GTCTC 4 cut(s) 119, 314, 381, 762
AlwI GGATC 2 cut(s) 155, 674
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 2 cut(s) 466, 892
AoxI GGCC 3 cut(s) 120, 146, 725
ApeKI GCWGC 2 cut(s) 557, 973
ApoI RAATTY 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
AsiGI ACCGGT 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 65, 978
AspS9I GGNCC 3 cut(s) 726, 818, 932
AsuHPI GGTGA 4 cut(s) 26, 115, 194, 730
AvaI CYCGRG 2 cut(s) 466, 892
AvaII GGWCC 2 cut(s) 818, 932
BarI GAAGNNNNNNTAC 2 cut(s) 757, 789
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 544, 960
BccI CCATC 1 cut(s) 909
BceAI ACGGC 4 cut(s) 31, 50, 123, 963
BciT130I CCWGG 2 cut(s) 119, 822
BcoDI GTCTC 4 cut(s) 119, 314, 381, 762
BfaI CTAG 2 cut(s) 578, 903
BfmI CTRYAG 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 3 cut(s) 123, 558, 974
BlsI GCNGC 3 cut(s) 124, 559, 975
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 119, 822
Bme18I GGWCC 2 cut(s) 818, 932
BmeRI GACNNNNNGTC 1 cut(s) 111
BmeT110I CYCGRG 2 cut(s) 466, 892
BmgBI CACGTC 1 cut(s) 723
BmgT120I GGNCC 3 cut(s) 726, 818, 932
BmiI GGNNCC 2 cut(s) 543, 933
BmrFI CCNGG 2 cut(s) 119, 822
BmrI ACTGGG 1 cut(s) 816
BmuI ACTGGG 1 cut(s) 816
BplI GAGNNNNNCTC 2 cut(s) 503, 535
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 5 cut(s) 338, 363, 489, 505, 751
Bsa29I ATCGAT 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bse118I RCCGGY 2 cut(s) 100, 148
Bse1I ACTGG 2 cut(s) 683, 811
BseBI CCWGG 2 cut(s) 119, 822
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 920
BseMII CTCAG 4 cut(s) 157, 501, 684, 690
BseNI ACTGG 2 cut(s) 683, 811
BseXI GCAGC 2 cut(s) 544, 960
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 2 cut(s) 71, 125
BshFI GGCC 3 cut(s) 122, 148, 727
BshTI ACCGGT 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 159
BsiHKCI CYCGRG 2 cut(s) 466, 892
BsiSI CCGG 2 cut(s) 101, 149
BslFI GGGAC 2 cut(s) 909, 945
BsmAI GTCTC 4 cut(s) 119, 314, 381, 762
BsmFI GGGAC 2 cut(s) 909, 945
BsnI GGCC 3 cut(s) 122, 148, 727
Bso31I GGTCTC 1 cut(s) 762
BsoBI CYCGRG 2 cut(s) 466, 892
Bsp1407I TGTACA 1 cut(s) 845
Bsp143I GATC 3 cut(s) 160, 679, 955
BspACI CCGC 5 cut(s) 36, 71, 123, 455, 695
BspANI GGCC 3 cut(s) 122, 148, 727
BspCNI CTCAG 4 cut(s) 156, 502, 683, 689
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 2 cut(s) 71, 125
BspLI GGNNCC 2 cut(s) 543, 933
BspPI GGATC 2 cut(s) 155, 674
BspTNI GGTCTC 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 100, 148
BsrGI TGTACA 1 cut(s) 845
BsrI ACTGG 2 cut(s) 683, 811
BssAI RCCGGY 2 cut(s) 100, 148
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 3 cut(s) 160, 679, 955
Bst2UI CCWGG 2 cut(s) 119, 822
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 3 cut(s) 781, 790, 979
BstAUI TGTACA 1 cut(s) 845
BstC8I GCNNGC 3 cut(s) 54, 150, 877
BstDEI CTNAG 6 cut(s) 59, 143, 274, 510, 670, 676
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 920
BstFNI CGCG 2 cut(s) 71, 125
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 978
BstKTI GATC 3 cut(s) 163, 682, 958
BstMAI GTCTC 4 cut(s) 119, 314, 381, 762
BstMBI GATC 3 cut(s) 160, 679, 955
BstMWI GCNNNNNNNGC 2 cut(s) 62, 563
BstNI CCWGG 2 cut(s) 119, 822
BstSCI CCNGG 2 cut(s) 117, 820
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 2 cut(s) 71, 125
BstV1I GCAGC 2 cut(s) 544, 960
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 3 cut(s) 122, 148, 727
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 89
BtrI CACGTC 1 cut(s) 723
BtsCI GGATG 1 cut(s) 920
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 187, 343, 920
Cac8I GCNNGC 3 cut(s) 54, 150, 877
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 2 cut(s) 65, 978
Cfr10I RCCGGY 2 cut(s) 100, 148
Cfr13I GGNCC 3 cut(s) 726, 818, 932
ClaI ATCGAT 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 820
Csp6I GTAC 3 cut(s) 76, 593, 846
CspAI ACCGGT 1 cut(s) 100
CviAII CATG 2 cut(s) 257, 286
CviQI GTAC 3 cut(s) 76, 593, 846
DdeI CTNAG 6 cut(s) 59, 143, 274, 510, 670, 676
DpnI GATC 3 cut(s) 162, 681, 957
DpnII GATC 3 cut(s) 160, 679, 955
DriI GACNNNNNGTC 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 781, 790, 979
Eam1105I GACNNNNNGTC 1 cut(s) 111
EarI CTCTTC 3 cut(s) 781, 790, 979
EciI GGCGGA 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 818, 932
Eco88I CYCGRG 2 cut(s) 466, 892
EcoO109I RGGNCCY 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 117, 820
FaeI CATG 2 cut(s) 260, 289
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 2 cut(s) 909, 945
FatI CATG 2 cut(s) 256, 285
FauNDI CATATG 1 cut(s) 850
Fnu4HI GCNGC 3 cut(s) 123, 558, 974
FokI GGATG 1 cut(s) 927
Fsp4HI GCNGC 3 cut(s) 123, 558, 974
FspBI CTAG 2 cut(s) 578, 903
GlaI GCGC 2 cut(s) 64, 977
GluI GCNGC 3 cut(s) 123, 558, 974
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 3 cut(s) 122, 148, 727
HapII CCGG 2 cut(s) 101, 149
HhaI GCGC 2 cut(s) 65, 978
Hin1II CATG 2 cut(s) 260, 289
Hin6I GCGC 2 cut(s) 63, 976
HinP1I GCGC 2 cut(s) 63, 976
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 5 cut(s) 112, 384, 574, 627, 925
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 101, 149
HphI GGTGA 4 cut(s) 26, 115, 194, 730
Hpy166II GTNNAC 2 cut(s) 262, 846
Hpy188I TCNGA 4 cut(s) 679, 741, 762, 804
Hpy188III TCNNGA 3 cut(s) 301, 711, 894
Hpy8I GTNNAC 2 cut(s) 262, 846
Hpy99I CGWCG 2 cut(s) 71, 984
HpyAV CCTTC 2 cut(s) 11, 759
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 722
HpyCH4V TGCA 1 cut(s) 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 563
HpyF3I CTNAG 6 cut(s) 59, 143, 274, 510, 670, 676
HpySE526I ACGT 1 cut(s) 722
Hsp92II CATG 2 cut(s) 260, 289
HspAI GCGC 2 cut(s) 63, 976
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 3 cut(s) 160, 679, 955
Lsp1109I GCAGC 2 cut(s) 544, 960
MabI ACCWGGT 1 cut(s) 820
MaeI CTAG 2 cut(s) 578, 903
MaeII ACGT 1 cut(s) 722
MaeIII GTNAC 6 cut(s) 103, 291, 385, 685, 718, 918
MalI GATC 3 cut(s) 162, 681, 957
MboI GATC 3 cut(s) 160, 679, 955
MboII GAAGA 8 cut(s) 36, 202, 404, 798, 807, 936, 939, 996
MflI RGATCY 1 cut(s) 679
MluCI AATT 4 cut(s) 7, 499, 569, 856
MlyI GAGTC 2 cut(s) 121, 393
MmeI TCCRAC 1 cut(s) 569
MroNI GCCGGC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 3 cut(s) 261, 498, 869
MslI CAYNNNNRTG 2 cut(s) 180, 621
MspI CCGG 2 cut(s) 101, 149
MspR9I CCNGG 2 cut(s) 119, 822
MvaI CCWGG 2 cut(s) 119, 822
MvnI CGCG 2 cut(s) 71, 125
MwoI GCNNNNNNNGC 2 cut(s) 62, 563
NaeI GCCGGC 1 cut(s) 150
NdeI CATATG 1 cut(s) 850
NdeII GATC 3 cut(s) 160, 679, 955
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 260, 289
NlaIV GGNNCC 2 cut(s) 543, 933
NmuCI GTSAC 6 cut(s) 103, 291, 385, 685, 718, 918
OliI CACNNNNGTG 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 574, 627, 925
PinAI ACCGGT 1 cut(s) 100
PkrI GCNGC 3 cut(s) 124, 559, 975
PleI GAGTC 2 cut(s) 120, 392
PpsI GAGTC 2 cut(s) 120, 392
PpuMI RGGWCCY 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 2 cut(s) 117, 820
PspGI CCWGG 2 cut(s) 117, 820
PspN4I GGNNCC 2 cut(s) 543, 933
PspPI GGNCC 3 cut(s) 726, 818, 932
PspPPI RGGWCCY 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 3 cut(s) 77, 594, 847
RsaNI GTAC 3 cut(s) 76, 593, 846
RseI CAYNNNNRTG 2 cut(s) 180, 621
SaqAI TTAA 3 cut(s) 261, 498, 869
SatI GCNGC 3 cut(s) 123, 558, 974
Sau3AI GATC 3 cut(s) 160, 679, 955
Sau96I GGNCC 3 cut(s) 726, 818, 932
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 2 cut(s) 121, 393
ScrFI CCNGG 2 cut(s) 119, 822
SexAI ACCWGGT 1 cut(s) 820
SfcI CTRYAG 1 cut(s) 79
SgrAI CRCCGGYG 1 cut(s) 100
SinI GGWCC 2 cut(s) 818, 932
SmiMI CAYNNNNRTG 2 cut(s) 180, 621
SmlI CTYRAG 5 cut(s) 317, 378, 504, 520, 730
SmoI CTYRAG 5 cut(s) 317, 378, 504, 520, 730
Sse9I AATT 4 cut(s) 7, 499, 569, 856
SsiI CCGC 5 cut(s) 36, 71, 123, 455, 695
SspMI CTAG 2 cut(s) 578, 903
StyD4I CCNGG 2 cut(s) 117, 820
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 725
TaqI TCGA 3 cut(s) 159, 712, 982
TasI AATT 4 cut(s) 7, 499, 569, 856
TatI WGTACW 2 cut(s) 75, 845
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 574, 627, 925
Tru1I TTAA 3 cut(s) 261, 498, 869
Tru9I TTAA 3 cut(s) 261, 498, 869
TscAI CASTG 3 cut(s) 187, 343, 927
TseFI GTSAC 6 cut(s) 103, 291, 385, 685, 718, 918
TseI GCWGC 2 cut(s) 557, 973
Tsp45I GTSAC 6 cut(s) 103, 291, 385, 685, 718, 918
TspDTI ATGAA 1 cut(s) 500
TspRI CASTG 3 cut(s) 187, 343, 927
VpaK11BI GGWCC 2 cut(s) 818, 932
XapI RAATTY 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 578, 903
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.