RchiOBHm_Chr4g0428081

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011374
Physical Location & Seq
Forward (+)
53197421 .. 53199306
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39699

Sequence Viewer

Length: 1155 bp
ATGGGCCGGGTCACGCATACGAATAAAAGGACTCAGCAGAAGAAATTAGAGAAAAGAAAAAGGAAAACCGCGAAGCGTCTGGACTCTCTGGAATGTGCTTGTCGTGAACAAGGAGGCAAATCCAAATCGAAGATCAAATCGGAAACCCTAAACACGATGGAGAGAAGAGGATCCCGATCCAACGGAATGTTGCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACAGGCTCGACAGGAAGCCTCCCGTCACCGCCGCACTCATTGCCGCCAATTCTCTCGTCTACTTACGCCCCGCCTTCCTCGAACCCATTCTCCCTTCCATTCACGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAATAAGGACTTGAAGCGGTTCTTGCTGTCACCGTTTTACCATGTGGGAGAGTCTCATCTGGTTTACAACATGCTCTCGCTTTTATGGAAGGGAATCAAGTTGGAGTCCTCCATGGATAGTGCTGAGTTTGCATCCATGGTTGCTGTGCTACTCGGTATGTCCCAAGGGATCACACTGCTGCTTTCGAAAGCGCTGCTGGTTTTGTTTGACTATGAGAAGGCTTATTATTCCGAATACGCTGTTGGGTTTTCTGGGGTGATATTTGCAATGAAGGTGGTTCTCAATTCGCAGTCCGGAAACTATAGTTATGTTCATGGAATTCCGATGCCGTCGCGTTATGCTGCTTGGGCCGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGTGTGTCTTTCATTGGTCATTTGGGTGGGATGCTTGCCGGGTTTCTGTATCTCCGATTGAGGAGTGCATATTCGGGCTCAGACCCACTTACTTTAGTTCTCAGAGGTGTTACTAATGTACTAGAATTGCCTATGCGGTTTTTAAGAAGAGTGCTTCCATTCAGACGGAGGCAGGTATCTGGTAGAGGGCCGGTTGGTGGGAGTCGTAGAGGAATAGCTTTGGCGGATTGGAGGTGCAGTGCTTGTACATATGAAAACTCTGGTTGGTTGGATGCATGTGAAATGTGTGGCACAAATAGGAATGACAATGGCAATCGCAATCCCATGGCGTCGCATCCTTTGCCACAATATTCGCGTGACCTTACTTTGGAAGAATTAAGGCAGCTAAGGTTGGAAAGATTTGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

384

Amino Acids

43.31

Weight (kDa)

9.97

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 124 - 268 2.4e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 907
AccB1I GGYRCC 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 285
AccII CGCG 3 cut(s) 71, 697, 1099
AccIII TCCGGA 1 cut(s) 656
AclWI GGATC 4 cut(s) 165, 171, 178, 539
AcsI RAATTY 1 cut(s) 681
AcyI GRCGYC 2 cut(s) 333, 1073
AfaI GTAC 2 cut(s) 864, 991
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 3 cut(s) 736, 941, 1111
AgsI TTSAA 2 cut(s) 343, 376
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 2 cut(s) 962, 1129
AluI AGCT 2 cut(s) 962, 1129
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 4 cut(s) 165, 171, 178, 539
Aor13HI TCCGGA 1 cut(s) 656
Aor51HI AGCGCT 1 cut(s) 555
AoxI GGCC 3 cut(s) 4, 711, 932
ApeKI GCWGC 5 cut(s) 196, 541, 556, 704, 1126
ApoI RAATTY 1 cut(s) 681
Asp700I GAANNNNTTC 2 cut(s) 312, 380
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 3 cut(s) 4, 711, 932
AsuC2I CCSGG 2 cut(s) 8, 784
AsuHPI GGTGA 4 cut(s) 244, 341, 384, 631
AsuII TTCGAA 1 cut(s) 548
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 739
BanII GRGCYC 1 cut(s) 824
BbvI GCAGC 5 cut(s) 183, 528, 543, 691, 1138
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 676
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 744
BcnI CCSGG 2 cut(s) 8, 784
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 866
BfmI CTRYAG 1 cut(s) 664
BfoI RGCGCY 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 907
BisI GCNGC 9 cut(s) 194, 197, 213, 258, 270, 542, 557, 705, 1127
BlsI GCNGC 9 cut(s) 195, 198, 214, 259, 271, 543, 558, 706, 1128
Bme1390I CCNGG 3 cut(s) 8, 744, 784
BmgT120I GGNCC 3 cut(s) 4, 711, 932
BmiI GGNNCC 2 cut(s) 172, 741
BmrFI CCNGG 3 cut(s) 8, 744, 784
BmsI GCATC 5 cut(s) 503, 678, 765, 1006, 1087
Bpu10I CCTNAGC 1 cut(s) 1130
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 8, 784
BsaBI GATNNNNATC 1 cut(s) 175
BsaHI GRCGYC 2 cut(s) 333, 1073
BsaJI CCNNGG 4 cut(s) 474, 498, 526, 1068
BsaWI WCCGGW 1 cut(s) 656
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 967, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 941, 1111
Bse118I RCCGGY 1 cut(s) 934
Bse3DI GCAATG 2 cut(s) 264, 636
Bse8I GATNNNNATC 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 4 cut(s) 474, 498, 526, 1068
BseGI GGATG 5 cut(s) 354, 494, 780, 1021, 1078
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 736, 941, 1111
BseMI GCAATG 2 cut(s) 264, 636
BseMII CTCAG 4 cut(s) 47, 477, 837, 859
BseRI GAGGAG 1 cut(s) 820
BseXI GCAGC 5 cut(s) 183, 528, 543, 691, 1138
BsgI GTGCAG 1 cut(s) 1000
Bsh1236I CGCG 3 cut(s) 71, 697, 1099
BshFI GGCC 3 cut(s) 6, 713, 934
BshNI GGYRCC 1 cut(s) 739
BsiSI CCGG 4 cut(s) 7, 657, 783, 935
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 736, 941, 1111
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 3 cut(s) 6, 713, 934
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 824
Bsp13I TCCGGA 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 989
Bsp143I GATC 4 cut(s) 132, 170, 176, 531
Bsp19I CCATGG 3 cut(s) 474, 498, 1068
BspANI GGCC 3 cut(s) 6, 713, 934
BspCNI CTCAG 4 cut(s) 46, 478, 836, 858
BspEI TCCGGA 1 cut(s) 656
BspFNI CGCG 3 cut(s) 71, 697, 1099
BspLI GGNNCC 2 cut(s) 172, 741
BspMI ACCTGC 1 cut(s) 907
BspPI GGATC 4 cut(s) 165, 171, 178, 539
BspT104I TTCGAA 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 739
BsrDI GCAATG 2 cut(s) 264, 636
BsrFI RCCGGY 1 cut(s) 934
BsrGI TGTACA 1 cut(s) 989
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 4 cut(s) 474, 498, 526, 1068
BssMI GATC 4 cut(s) 132, 170, 176, 531
BssNI GRCGYC 2 cut(s) 333, 1073
BssT1I CCWWGG 4 cut(s) 474, 498, 526, 1068
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 2 cut(s) 160, 886
BstACI GRCGYC 2 cut(s) 333, 1073
BstAPI GCANNNNNTGC 2 cut(s) 266, 1084
BstAUI TGTACA 1 cut(s) 989
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 201, 217, 780
BstDEI CTNAG 5 cut(s) 33, 486, 823, 845, 1130
BstDSI CCRYGG 3 cut(s) 474, 498, 1068
BstF5I GGATG 5 cut(s) 354, 494, 780, 1021, 1078
BstFNI CGCG 3 cut(s) 71, 697, 1099
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 4 cut(s) 135, 173, 179, 534
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 4 cut(s) 132, 170, 176, 531
BstMWI GCNNNNNNNGC 6 cut(s) 209, 266, 385, 491, 710, 1084
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 2 cut(s) 436, 1023
BstSCI CCNGG 3 cut(s) 6, 742, 782
BstSFI CTRYAG 1 cut(s) 664
BstUI CGCG 3 cut(s) 71, 697, 1099
BstV1I GCAGC 5 cut(s) 183, 528, 543, 691, 1138
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 3 cut(s) 6, 713, 934
BtgI CCRYGG 3 cut(s) 474, 498, 1068
BtsCI GGATG 5 cut(s) 354, 494, 780, 1021, 1078
BtsI GCAGTG 2 cut(s) 536, 988
BtsIMutI CAGTG 2 cut(s) 536, 988
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 3 cut(s) 201, 217, 780
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 4, 711, 932
CseI GACGC 2 cut(s) 65, 1062
Csp6I GTAC 2 cut(s) 863, 990
CspCI CAANNNNNGTGG 2 cut(s) 618, 653
CviAII CATG 7 cut(s) 404, 433, 475, 499, 677, 1020, 1069
CviJI RGCY 9 cut(s) 6, 232, 244, 584, 713, 822, 934, 962, 1129
CviKI_1 RGCY 9 cut(s) 6, 232, 244, 584, 713, 822, 934, 962, 1129
CviQI GTAC 2 cut(s) 863, 990
DdeI CTNAG 5 cut(s) 33, 486, 823, 845, 1130
DpnI GATC 4 cut(s) 134, 172, 178, 533
DpnII GATC 4 cut(s) 132, 170, 176, 531
Eam1104I CTCTTC 2 cut(s) 160, 886
EarI CTCTTC 2 cut(s) 160, 886
EciI GGCGGA 1 cut(s) 983
Eco130I CCWWGG 4 cut(s) 474, 498, 526, 1068
Eco24I GRGCYC 1 cut(s) 824
Eco47III AGCGCT 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 4 cut(s) 474, 498, 526, 1068
EcoT22I ATGCAT 1 cut(s) 1021
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 4 cut(s) 474, 498, 526, 1068
FaeI CATG 7 cut(s) 407, 436, 478, 502, 680, 1023, 1072
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 508
FatI CATG 7 cut(s) 403, 432, 474, 498, 676, 1019, 1068
FauI CCCGC 1 cut(s) 304
FauNDI CATATG 1 cut(s) 994
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 9 cut(s) 194, 197, 213, 258, 270, 542, 557, 705, 1127
FokI GGATG 5 cut(s) 341, 481, 787, 1028, 1065
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 9 cut(s) 194, 197, 213, 258, 270, 542, 557, 705, 1127
FspBI CTAG 1 cut(s) 866
GlaI GCGC 1 cut(s) 555
GluI GCNGC 9 cut(s) 194, 197, 213, 258, 270, 542, 557, 705, 1127
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 3 cut(s) 6, 713, 934
HapII CCGG 4 cut(s) 7, 657, 783, 935
HgaI GACGC 2 cut(s) 65, 1062
HhaI GCGC 1 cut(s) 556
Hin1I GRCGYC 2 cut(s) 333, 1073
Hin1II CATG 7 cut(s) 407, 436, 478, 502, 680, 1023, 1072
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 6 cut(s) 31, 83, 413, 456, 467, 946
HpaII CCGG 4 cut(s) 7, 657, 783, 935
HphI GGTGA 4 cut(s) 244, 341, 384, 631
Hpy166II GTNNAC 3 cut(s) 107, 286, 427
Hpy188I TCNGA 7 cut(s) 142, 595, 687, 800, 826, 848, 908
Hpy188III TCNNGA 8 cut(s) 80, 89, 104, 174, 329, 361, 657, 730
Hpy8I GTNNAC 3 cut(s) 107, 286, 427
Hpy99I CGWCG 3 cut(s) 335, 697, 1078
HpyAV CCTTC 5 cut(s) 310, 330, 445, 574, 628
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 5 cut(s) 494, 629, 812, 981, 1019
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 266, 385, 491, 710, 1084
HpyF3I CTNAG 5 cut(s) 33, 486, 823, 845, 1130
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 2 cut(s) 333, 1073
Hsp92II CATG 7 cut(s) 407, 436, 478, 502, 680, 1023, 1072
HspAI GCGC 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 656
Kzo9I GATC 4 cut(s) 132, 170, 176, 531
Lsp1109I GCAGC 5 cut(s) 183, 528, 543, 691, 1138
LweI GCATC 5 cut(s) 503, 678, 765, 1006, 1087
MaeI CTAG 1 cut(s) 866
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 5 cut(s) 10, 250, 390, 853, 1100
MalI GATC 4 cut(s) 134, 172, 178, 533
MboI GATC 4 cut(s) 132, 170, 176, 531
MboII GAAGA 5 cut(s) 52, 142, 177, 903, 1127
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 824
MluCI AATT 6 cut(s) 44, 274, 646, 681, 869, 1118
MlyI GAGTC 5 cut(s) 25, 77, 422, 476, 955
MmeI TCCRAC 4 cut(s) 204, 444, 993, 1116
Mph1103I ATGCAT 1 cut(s) 1021
MroI TCCGGA 1 cut(s) 656
MroXI GAANNNNTTC 2 cut(s) 312, 380
MseI TTAA 2 cut(s) 887, 1121
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 4 cut(s) 7, 657, 783, 935
MspR9I CCNGG 3 cut(s) 8, 744, 784
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 3 cut(s) 71, 697, 1099
MwoI GCNNNNNNNGC 6 cut(s) 209, 266, 385, 491, 710, 1084
NciI CCSGG 2 cut(s) 8, 784
NcoI CCATGG 3 cut(s) 474, 498, 1068
NdeI CATATG 1 cut(s) 994
NdeII GATC 4 cut(s) 132, 170, 176, 531
NlaIII CATG 7 cut(s) 407, 436, 478, 502, 680, 1023, 1072
NlaIV GGNNCC 2 cut(s) 172, 741
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 4 cut(s) 10, 250, 390, 1100
NsiI ATGCAT 1 cut(s) 1021
NspI RCATGY 2 cut(s) 436, 1023
NspV TTCGAA 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 2 cut(s) 312, 380
PfeI GAWTC 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 9 cut(s) 195, 198, 214, 259, 271, 543, 558, 706, 1128
PleI GAGTC 5 cut(s) 25, 77, 421, 475, 954
PpsI GAGTC 5 cut(s) 25, 77, 421, 475, 954
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 172, 741
PspPI GGNCC 3 cut(s) 4, 711, 932
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 864, 991
RsaNI GTAC 2 cut(s) 863, 990
RseI CAYNNNNRTG 1 cut(s) 768
SaqAI TTAA 2 cut(s) 887, 1121
SatI GCNGC 9 cut(s) 194, 197, 213, 258, 270, 542, 557, 705, 1127
Sau3AI GATC 4 cut(s) 132, 170, 176, 531
Sau96I GGNCC 3 cut(s) 4, 711, 932
SchI GAGTC 5 cut(s) 25, 77, 422, 476, 955
ScrFI CCNGG 3 cut(s) 8, 744, 784
SduI GDGCHC 1 cut(s) 824
SfaNI GCATC 5 cut(s) 503, 678, 765, 1006, 1087
SfcI CTRYAG 1 cut(s) 664
SfuI TTCGAA 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 6 cut(s) 44, 274, 646, 681, 869, 1118
SspI AATATT 1 cut(s) 1094
SspMI CTAG 1 cut(s) 866
StyD4I CCNGG 3 cut(s) 6, 742, 782
StyI CCWWGG 4 cut(s) 474, 498, 526, 1068
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 336
TaqI TCGA 4 cut(s) 128, 234, 306, 548
TasI AATT 6 cut(s) 44, 274, 646, 681, 869, 1118
TatI WGTACW 2 cut(s) 862, 989
TauI GCSGC 4 cut(s) 196, 215, 260, 272
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 2 cut(s) 887, 1121
Tru9I TTAA 2 cut(s) 887, 1121
TscAI CASTG 2 cut(s) 543, 988
TseFI GTSAC 4 cut(s) 10, 250, 390, 1100
TseI GCWGC 5 cut(s) 196, 541, 556, 704, 1126
Tsp45I GTSAC 4 cut(s) 10, 250, 390, 1100
TspDTI ATGAA 4 cut(s) 647, 665, 745, 1011
TspGWI ACGGA 2 cut(s) 198, 925
TspRI CASTG 2 cut(s) 543, 988
Van91I CCANNNNNTGG 1 cut(s) 736
XapI RAATTY 1 cut(s) 681
XceI RCATGY 2 cut(s) 436, 1023
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 312, 380
XspI CTAG 1 cut(s) 866
ZraI GACGTC 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.