Prupe.1G209100_v2.0.a1

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011374
Physical Location & Seq
Forward (+)
22304588 .. 22306301
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G209100.1

Sequence Viewer

Length: 1005 bp
ATGGTGAGAACAAGAAACGGGCCGCGATCGAACGGAATGCTGCCGCTGTTAGCACTTCACGCGGCGAGCGAGTATTACAGGCTCGACCGGAAGCCTCCGGTCACCGCCGGACTCATTGCCGCCAATTCTCTCATCTACTTACGTCCTGCTTTTCTTGACCCCATTCTCCCTTCCCTCCAAGAAGTCTGGTTCAACCCCCACCTCATCCTCAAGAATGGAGACTTGAAGCGCTTCTTCTTGTCGCCGTTCTATCATGTGGGAGAGTCTCACTTGGTTTACAACATGCTCTCCCTCTTGTGGAAGGGAATTCAATTGGAAAATTCAATGGACAGTGCTGAGTTCGCTTCCATGGTTGCTGTGCTACTGGGCATGTCCCAAGGAATCTCACTGCTGATTTCCAAGTCCCTGCTTGCGTTCTTTGACTATGAATGGGCTTACTACACTGAATACTCTGTTGGGTTTTCTGGGGTGCTCTTTGCCATGAAGGTTGTGCTCAATTCCCAGACCGAGAACAGTTATGTTTATGGAATTCCGATACCATCTCGTTACGCTGCGTGGGCGGAATTGGCTCTGGTCCAATTTTTGGTTCCTGGTGTCTCTTTTATTGGTCATTTGGGTGGAATTCTTGCAGGGCTTGTCTATATTCAGTTGAGGGGTTCTTACAATGGCTCAGACCCACTTACTGTTATCGTCAGAGGTCTTACTGGTGTGCTGAAATGGCCTGTGAGATTTTTACGACGCTTGTTTCCATTTCGAAGGAGGCAGATATCCGGTAGAGGACCTGTTGGTGGGGGTCAGAGAGGAATTTCTGTGTCTGGTTTCTGGAGATGCCATGCTTGTACGTATGAGAATTCTGCTTGGTTAGATGTATGCGAAATGTGTTCGACAAATAGGAGGGCCACTGGCAGTGCCAATGGCATGGCTTCACCTCGATCGGCACATTATTCCGGTGACCTTCCTTTGGAAGAATTACGTCGGCGGAGGATGGAAAGATTTGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

335

Amino Acids

37.41

Weight (kDa)

9.76

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AccII CGCG 2 cut(s) 25, 62
AciI CCGC 7 cut(s) 23, 44, 62, 105, 120, 560, 979
AcsI RAATTY 6 cut(s) 306, 319, 528, 621, 804, 850
AfaI GTAC 1 cut(s) 841
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 4 cut(s) 297, 583, 788, 961
AgsI TTSAA 4 cut(s) 193, 226, 311, 324
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 4 cut(s) 438, 470, 570, 602
Alw21I GWGCWC 2 cut(s) 474, 495
Alw26I GTCTC 3 cut(s) 213, 270, 601
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 3 cut(s) 20, 719, 897
ApeKI GCWGC 2 cut(s) 40, 551
ApoI RAATTY 6 cut(s) 306, 319, 528, 621, 804, 850
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 4 cut(s) 20, 574, 779, 897
AsuHPI GGTGA 4 cut(s) 16, 94, 918, 962
AsuII TTCGAA 1 cut(s) 754
AvaII GGWCC 2 cut(s) 574, 779
Bbv12I GWGCWC 2 cut(s) 474, 495
BbvI GCAGC 2 cut(s) 27, 538
BccI CCATC 2 cut(s) 547, 979
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 591
BcoDI GTCTC 3 cut(s) 213, 270, 601
BfoI RGCGCY 1 cut(s) 232
BisI GCNGC 6 cut(s) 23, 41, 44, 63, 120, 552
BlsI GCNGC 6 cut(s) 24, 42, 45, 64, 121, 553
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 2 cut(s) 574, 779
BmgT120I GGNCC 4 cut(s) 20, 574, 779, 897
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 818
BmuI ACTGGG 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 844
Bpu14I TTCGAA 1 cut(s) 754
BpuEI CTTGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 843
BsaJI CCNNGG 2 cut(s) 348, 376
BsaWI WCCGGW 4 cut(s) 87, 97, 770, 947
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 583, 788, 961
Bse1I ACTGG 3 cut(s) 369, 709, 907
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 348, 376
BseGI GGATG 2 cut(s) 204, 990
BseLI CCNNNNNNNGG 4 cut(s) 297, 583, 788, 961
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 327, 684
BseNI ACTGG 3 cut(s) 369, 709, 907
BseXI GCAGC 2 cut(s) 27, 538
Bsh1236I CGCG 2 cut(s) 25, 62
Bsh1285I CGRYCG 3 cut(s) 29, 88, 935
BshFI GGCC 3 cut(s) 22, 721, 899
BsiEI CGRYCG 3 cut(s) 29, 88, 935
BsiHKAI GWGCWC 2 cut(s) 474, 495
BsiSI CCGG 5 cut(s) 88, 98, 108, 771, 948
BslFI GGGAC 2 cut(s) 358, 388
BslI CCNNNNNNNGG 4 cut(s) 297, 583, 788, 961
BsmAI GTCTC 3 cut(s) 213, 270, 601
BsmFI GGGAC 2 cut(s) 358, 388
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 3 cut(s) 22, 721, 899
Bsp119I TTCGAA 1 cut(s) 754
Bsp1286I GDGCHC 2 cut(s) 474, 495
Bsp143I GATC 2 cut(s) 26, 932
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 7 cut(s) 23, 44, 62, 105, 120, 560, 979
BspANI GGCC 3 cut(s) 22, 721, 899
BspCNI CTCAG 2 cut(s) 328, 683
BspFNI CGCG 2 cut(s) 25, 62
BspLI GGNNCC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 3 cut(s) 369, 709, 907
BssECI CCNNGG 2 cut(s) 348, 376
BssMI GATC 2 cut(s) 26, 932
BssT1I CCWWGG 2 cut(s) 348, 376
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 3 cut(s) 332, 515, 685
BstBAI YACGTR 1 cut(s) 843
BstBI TTCGAA 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 67, 411
BstDEI CTNAG 2 cut(s) 336, 670
BstDSI CCRYGG 1 cut(s) 348
BstEII GGTNACC 2 cut(s) 100, 950
BstF5I GGATG 2 cut(s) 204, 990
BstFNI CGCG 2 cut(s) 25, 62
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 29, 935
BstMAI GTCTC 3 cut(s) 213, 270, 601
BstMBI GATC 2 cut(s) 26, 932
BstMCI CGRYCG 3 cut(s) 29, 88, 935
BstMWI GCNNNNNNNGC 5 cut(s) 59, 341, 557, 566, 718
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 2 cut(s) 286, 373
BstPI GGTNACC 2 cut(s) 100, 950
BstSCI CCNGG 1 cut(s) 589
BstSNI TACGTA 1 cut(s) 843
BstUI CGCG 2 cut(s) 25, 62
BstV1I GCAGC 2 cut(s) 27, 538
BstXI CCANNNNNNTGG 1 cut(s) 919
BsuRI GGCC 3 cut(s) 22, 721, 899
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 204, 990
BtsI GCAGTG 2 cut(s) 386, 913
BtsIMutI CAGTG 5 cut(s) 337, 386, 441, 900, 913
Cac8I GCNNGC 2 cut(s) 67, 411
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 4 cut(s) 20, 574, 779, 897
CseI GACGC 1 cut(s) 747
Csp6I GTAC 1 cut(s) 840
CviAII CATG 7 cut(s) 254, 283, 349, 370, 481, 833, 919
CviQI GTAC 1 cut(s) 840
DdeI CTNAG 2 cut(s) 336, 670
DpnI GATC 2 cut(s) 28, 934
DpnII GATC 2 cut(s) 26, 932
EciI GGCGGA 2 cut(s) 575, 994
Eco105I TACGTA 1 cut(s) 843
Eco130I CCWWGG 2 cut(s) 348, 376
Eco32I GATATC 1 cut(s) 768
Eco47I GGWCC 2 cut(s) 574, 779
Eco47III AGCGCT 1 cut(s) 230
Eco91I GGTNACC 2 cut(s) 100, 950
EcoO109I RGGNCCY 1 cut(s) 779
EcoO65I GGTNACC 2 cut(s) 100, 950
EcoRI GAATTC 4 cut(s) 306, 528, 621, 850
EcoRII CCWGG 1 cut(s) 589
EcoRV GATATC 1 cut(s) 768
EcoT14I CCWWGG 2 cut(s) 348, 376
ErhI CCWWGG 2 cut(s) 348, 376
FaeI CATG 7 cut(s) 257, 286, 352, 373, 484, 836, 922
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 358, 388
FatI CATG 7 cut(s) 253, 282, 348, 369, 480, 832, 918
Fnu4HI GCNGC 6 cut(s) 23, 41, 44, 63, 120, 552
FokI GGATG 2 cut(s) 191, 997
Fsp4HI GCNGC 6 cut(s) 23, 41, 44, 63, 120, 552
GlaI GCGC 1 cut(s) 230
GluI GCNGC 6 cut(s) 23, 41, 44, 63, 120, 552
GsuI CTGGAG 1 cut(s) 844
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 3 cut(s) 22, 721, 899
HapII CCGG 5 cut(s) 88, 98, 108, 771, 948
HgaI GACGC 1 cut(s) 747
HhaI GCGC 1 cut(s) 231
Hin1II CATG 7 cut(s) 257, 286, 352, 373, 484, 836, 922
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 3 cut(s) 111, 263, 381
HpaII CCGG 5 cut(s) 88, 98, 108, 771, 948
HphI GGTGA 4 cut(s) 16, 94, 918, 962
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 534, 673, 695, 798
Hpy188III TCNNGA 3 cut(s) 155, 211, 823
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 741, 978
HpyAV CCTTC 5 cut(s) 180, 295, 478, 750, 965
HpyCH4III ACNGT 3 cut(s) 332, 515, 685
HpyCH4IV ACGT 3 cut(s) 142, 842, 973
HpyCH4V TGCA 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 341, 557, 566, 718
HpyF3I CTNAG 2 cut(s) 336, 670
HpySE526I ACGT 3 cut(s) 142, 842, 973
Hsp92II CATG 7 cut(s) 257, 286, 352, 373, 484, 836, 922
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 26, 932
Lsp1109I GCAGC 2 cut(s) 27, 538
LweI GCATC 1 cut(s) 818
MaeII ACGT 3 cut(s) 142, 842, 973
MaeIII GTNAC 3 cut(s) 100, 545, 950
MalI GATC 2 cut(s) 28, 934
MboI GATC 2 cut(s) 26, 932
MboII GAAGA 2 cut(s) 226, 977
MfeI CAATTG 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 474, 495
MlyI GAGTC 2 cut(s) 105, 272
MroXI GAANNNNTTC 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 5 cut(s) 88, 98, 108, 771, 948
MspR9I CCNGG 1 cut(s) 591
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 2 cut(s) 25, 62
MwoI GCNNNNNNNGC 5 cut(s) 59, 341, 557, 566, 718
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 26, 932
NlaIII CATG 7 cut(s) 257, 286, 352, 373, 484, 836, 922
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 100, 950
NspI RCATGY 2 cut(s) 286, 373
NspV TTCGAA 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 6 cut(s) 24, 42, 45, 64, 121, 553
Ple19I CGATCG 2 cut(s) 29, 935
PleI GAGTC 2 cut(s) 105, 271
PpsI GAGTC 2 cut(s) 105, 271
Ppu21I YACGTR 1 cut(s) 843
PpuMI RGGWCCY 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 589
PspEI GGTNACC 2 cut(s) 100, 950
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 4 cut(s) 20, 574, 779, 897
PspPPI RGGWCCY 1 cut(s) 779
PvuI CGATCG 2 cut(s) 29, 935
RsaI GTAC 1 cut(s) 841
RsaNI GTAC 1 cut(s) 840
RseI CAYNNNNRTG 1 cut(s) 615
SatI GCNGC 6 cut(s) 23, 41, 44, 63, 120, 552
Sau3AI GATC 2 cut(s) 26, 932
Sau96I GGNCC 4 cut(s) 20, 574, 779, 897
SchI GAGTC 2 cut(s) 105, 272
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 2 cut(s) 474, 495
SetI ASST 9 cut(s) 145, 204, 489, 700, 784, 845, 931, 957, 976
SfaNI GCATC 1 cut(s) 818
SfuI TTCGAA 1 cut(s) 754
SinI GGWCC 2 cut(s) 574, 779
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SnaBI TACGTA 1 cut(s) 843
SsiI CCGC 7 cut(s) 23, 44, 62, 105, 120, 560, 979
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 2 cut(s) 348, 376
TaaI ACNGT 3 cut(s) 332, 515, 685
TaiI ACGT 3 cut(s) 145, 845, 976
TaqI TCGA 5 cut(s) 29, 84, 754, 884, 931
TaqII GACCGA 1 cut(s) 521
TauI GCSGC 4 cut(s) 25, 46, 65, 122
TfiI GAWTC 1 cut(s) 381
TscAI CASTG 5 cut(s) 337, 393, 448, 907, 913
TseFI GTSAC 2 cut(s) 100, 950
TseI GCWGC 2 cut(s) 40, 551
Tsp45I GTSAC 2 cut(s) 100, 950
TspDTI ATGAA 2 cut(s) 441, 497
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 5 cut(s) 337, 393, 448, 907, 913
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 574, 779
XapI RAATTY 6 cut(s) 306, 319, 528, 621, 804, 850
XceI RCATGY 2 cut(s) 286, 373
XmnI GAANNNNTTC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.