Rh4BG284800

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011374
Physical Location & Seq
Forward (+)
45901739 .. 45902889
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG284800.1

Sequence Viewer

Length: 993 bp
ATGGAGAGAAGAGGATCCCGATCCAACGGAATGTTGCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACAGGCTCGACAGGAAGCCTCCCGTCACCGCCGCACTCATTGCCGCCAATTCTCTCGTCTACTTACGCCCCGCCTTCCTCGAACCCATTCTCCCTTCCATTCACGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAATAAGGACTTGAAGCGGTTCTTGCTGTCACCGTTTTACCATGTGGGAGAGTCTCATCTGGTTTACAACATGCTCTCGCTTTTATGGAAGGGAATCAAGTTGGAGTCCTCCATGGATAGTGCTGAATTTGCATCCATGGTTGCTGTGCTACTCGGCATGTCCCAAGGAATCACACTGCTGCTTTCGAAAGCGCTGCTGGTTTTGTTTGACTATGAGAAGGCTTATTATTCCGAGTATGCTGTTGGGTTTTCTGGGGTGATATTTGCAATGAAGGTGGTTCTCAATTCGCAGTCCGGAAACTATAGTTATGTTCATGGAATTCCGATGCCGTCGCGTTATGCTGCTTGGGCGGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGTGTGTCTTTCATTGGTCATTTGGGTGGGATACTTGCCGGGTTTCTGTATCTCCGATTGAGGAGTGCATATTCGGGCTCAGACCCACTTACTTTAGTTCTCAGAGGTGTTAATAATGTACTAGAATTGCCTATGCAGTTTTTAAGAAGAGTGTTTCCATTCAGACGGAGGCAGGTATCTGGTAGAGGACCGGTTGGTGGGAGTCTTAGAGGAATAGCTGTGGCGGATTGGAGGTGCAGTGCTTGTACATATGAAAACTCTGGTTGGTTGGATGCATGTGAAATGTGTGGCACAAATAGGAATGACAATGGCAATCCCATGGCGTCGCATCCTTTACCACAATATTCACGTGACCTTACTATGGAAGAATTAAGGCGGCTAAGGTTGGAAAGATTTGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

330

Amino Acids

37.03

Weight (kDa)

9.49

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 72 - 216 1.4e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 500
AclWI GGATC 3 cut(s) 9, 15, 22
AcsI RAATTY 2 cut(s) 332, 525
AcvI CACGTG 1 cut(s) 938
AcyI GRCGYC 2 cut(s) 177, 911
AfaI GTAC 2 cut(s) 708, 835
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 580, 785, 949
AgeI ACCGGT 1 cut(s) 778
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 586
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 806
AluI AGCT 1 cut(s) 806
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 3 cut(s) 9, 15, 22
Aor13HI TCCGGA 1 cut(s) 500
Aor51HI AGCGCT 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 40, 385, 400, 548
ApoI RAATTY 2 cut(s) 332, 525
AsiGI ACCGGT 1 cut(s) 778
Asp700I GAANNNNTTC 2 cut(s) 156, 224
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 4 cut(s) 88, 185, 228, 475
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 668
BbrPI CACGTG 1 cut(s) 938
BbvI GCAGC 4 cut(s) 27, 372, 387, 535
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 751
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 965
BlsI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 966
Bme1390I CCNGG 2 cut(s) 588, 628
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 16, 585
BmrFI CCNGG 2 cut(s) 588, 628
BmsI GCATC 4 cut(s) 347, 522, 850, 925
Bpu10I CCTNAGC 1 cut(s) 968
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 177, 911
BsaJI CCNNGG 4 cut(s) 318, 342, 370, 906
BsaWI WCCGGW 2 cut(s) 500, 778
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 811, 841
Bsc4I CCNNNNNNNGG 3 cut(s) 580, 785, 949
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 2 cut(s) 108, 480
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 318, 342, 370, 906
BseGI GGATG 4 cut(s) 198, 338, 865, 916
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 580, 785, 949
BseMI GCAATG 2 cut(s) 108, 480
BseMII CTCAG 2 cut(s) 681, 703
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 4 cut(s) 27, 372, 387, 535
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 778
BsiSI CCGG 3 cut(s) 501, 627, 779
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 580, 785, 949
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 2 cut(s) 14, 20
Bsp19I CCATGG 3 cut(s) 318, 342, 906
BspCNI CTCAG 2 cut(s) 680, 702
BspEI TCCGGA 1 cut(s) 500
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 16, 585
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 3 cut(s) 9, 15, 22
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 583
BsrDI GCAATG 2 cut(s) 108, 480
BsrFI RCCGGY 1 cut(s) 778
BsrGI TGTACA 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 318, 342, 370, 906
BssMI GATC 2 cut(s) 14, 20
BssNI GRCGYC 2 cut(s) 177, 911
BssT1I CCWWGG 4 cut(s) 318, 342, 370, 906
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 4, 730
BstACI GRCGYC 2 cut(s) 177, 911
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 833
BstBAI YACGTR 1 cut(s) 938
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 45, 61
BstDEI CTNAG 4 cut(s) 667, 689, 794, 968
BstDSI CCRYGG 3 cut(s) 318, 342, 906
BstF5I GGATG 4 cut(s) 198, 338, 865, 916
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 2 cut(s) 17, 23
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 14, 20
BstMWI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 554
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 3 cut(s) 280, 367, 867
BstSCI CCNGG 2 cut(s) 586, 626
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 27, 372, 387, 535
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 612
BtgI CCRYGG 3 cut(s) 318, 342, 906
BtsCI GGATG 4 cut(s) 198, 338, 865, 916
BtsI GCAGTG 2 cut(s) 380, 832
BtsIMutI CAGTG 2 cut(s) 380, 832
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 2 cut(s) 45, 61
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 900
Csp6I GTAC 2 cut(s) 707, 834
CspAI ACCGGT 1 cut(s) 778
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 8 cut(s) 248, 277, 319, 343, 364, 521, 864, 907
CviJI RGCY 6 cut(s) 76, 88, 428, 666, 806, 967
CviKI_1 RGCY 6 cut(s) 76, 88, 428, 666, 806, 967
CviQI GTAC 2 cut(s) 707, 834
DdeI CTNAG 4 cut(s) 667, 689, 794, 968
DpnI GATC 2 cut(s) 16, 22
DpnII GATC 2 cut(s) 14, 20
Eam1104I CTCTTC 2 cut(s) 4, 730
EarI CTCTTC 2 cut(s) 4, 730
EciI GGCGGA 2 cut(s) 572, 827
Eco130I CCWWGG 4 cut(s) 318, 342, 370, 906
Eco24I GRGCYC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 399
Eco72I CACGTG 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 4 cut(s) 318, 342, 370, 906
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 4 cut(s) 318, 342, 370, 906
FaeI CATG 8 cut(s) 251, 280, 322, 346, 367, 524, 867, 910
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 352
FatI CATG 8 cut(s) 247, 276, 318, 342, 363, 520, 863, 906
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 965
FokI GGATG 4 cut(s) 185, 325, 872, 903
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 965
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 399
GluI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 965
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 3 cut(s) 501, 627, 779
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 2 cut(s) 177, 911
Hin1II CATG 8 cut(s) 251, 280, 322, 346, 367, 524, 867, 910
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 5 cut(s) 257, 300, 311, 375, 790
HpaII CCGG 3 cut(s) 501, 627, 779
HphI GGTGA 4 cut(s) 88, 185, 228, 475
Hpy166II GTNNAC 2 cut(s) 130, 271
Hpy188I TCNGA 6 cut(s) 439, 531, 644, 670, 692, 752
Hpy188III TCNNGA 5 cut(s) 18, 173, 205, 501, 574
Hpy8I GTNNAC 2 cut(s) 130, 271
Hpy99I CGWCG 3 cut(s) 179, 541, 916
HpyAV CCTTC 5 cut(s) 154, 174, 289, 418, 472
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 2 cut(s) 177, 937
HpyCH4V TGCA 6 cut(s) 338, 473, 656, 724, 825, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 554
HpyF3I CTNAG 4 cut(s) 667, 689, 794, 968
HpySE526I ACGT 2 cut(s) 177, 937
Hsp92I GRCGYC 2 cut(s) 177, 911
Hsp92II CATG 8 cut(s) 251, 280, 322, 346, 367, 524, 867, 910
HspAI GCGC 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 500
Kzo9I GATC 2 cut(s) 14, 20
Lsp1109I GCAGC 4 cut(s) 27, 372, 387, 535
LweI GCATC 4 cut(s) 347, 522, 850, 925
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 177, 937
MaeIII GTNAC 3 cut(s) 94, 234, 938
MalI GATC 2 cut(s) 16, 22
MboI GATC 2 cut(s) 14, 20
MboII GAAGA 3 cut(s) 21, 747, 965
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 6 cut(s) 118, 332, 490, 525, 713, 956
MlyI GAGTC 3 cut(s) 266, 320, 799
MmeI TCCRAC 4 cut(s) 48, 288, 837, 954
Mph1103I ATGCAT 1 cut(s) 865
MroI TCCGGA 1 cut(s) 500
MroXI GAANNNNTTC 2 cut(s) 156, 224
MseI TTAA 3 cut(s) 699, 731, 959
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 3 cut(s) 501, 627, 779
MspR9I CCNGG 2 cut(s) 588, 628
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 5 cut(s) 53, 110, 229, 335, 554
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 3 cut(s) 318, 342, 906
NdeI CATATG 1 cut(s) 838
NdeII GATC 2 cut(s) 14, 20
NlaIII CATG 8 cut(s) 251, 280, 322, 346, 367, 524, 867, 910
NlaIV GGNNCC 2 cut(s) 16, 585
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 3 cut(s) 94, 234, 938
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 3 cut(s) 280, 367, 867
NspV TTCGAA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 156, 224
PfeI GAWTC 2 cut(s) 300, 375
PflMI CCANNNNNTGG 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 778
PkrI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 966
PleI GAGTC 3 cut(s) 265, 319, 798
PmaCI CACGTG 1 cut(s) 938
PmlI CACGTG 1 cut(s) 938
PpsI GAGTC 3 cut(s) 265, 319, 798
Ppu21I YACGTR 1 cut(s) 938
Psp6I CCWGG 1 cut(s) 586
PspCI CACGTG 1 cut(s) 938
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 16, 585
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 708, 835
RsaNI GTAC 2 cut(s) 707, 834
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 3 cut(s) 699, 731, 959
SatI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 965
Sau3AI GATC 2 cut(s) 14, 20
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 3 cut(s) 266, 320, 799
ScrFI CCNGG 2 cut(s) 588, 628
SduI GDGCHC 1 cut(s) 668
SfaNI GCATC 4 cut(s) 347, 522, 850, 925
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 6 cut(s) 118, 332, 490, 525, 713, 956
SspI AATATT 1 cut(s) 932
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 586, 626
StyI CCWWGG 4 cut(s) 318, 342, 370, 906
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 2 cut(s) 180, 940
TaqI TCGA 3 cut(s) 78, 150, 392
TasI AATT 6 cut(s) 118, 332, 490, 525, 713, 956
TatI WGTACW 2 cut(s) 706, 833
TauI GCSGC 5 cut(s) 40, 59, 104, 116, 967
TfiI GAWTC 2 cut(s) 300, 375
Tru1I TTAA 3 cut(s) 699, 731, 959
Tru9I TTAA 3 cut(s) 699, 731, 959
TscAI CASTG 2 cut(s) 387, 832
TseFI GTSAC 3 cut(s) 94, 234, 938
TseI GCWGC 4 cut(s) 40, 385, 400, 548
Tsp45I GTSAC 3 cut(s) 94, 234, 938
TspDTI ATGAA 4 cut(s) 491, 509, 589, 855
TspGWI ACGGA 2 cut(s) 42, 769
TspRI CASTG 2 cut(s) 387, 832
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 2 cut(s) 332, 525
XceI RCATGY 3 cut(s) 280, 367, 867
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 156, 224
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.