FvH4_4g21840

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011374
Physical Location & Seq
Forward (+)
24835631 .. 24838209
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21840.t1

Sequence Viewer

Length: 999 bp
ATGGAGAGAAGAGGATCCCGATCCAACGGAATGCTCCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACCGGCTCGAAAGGAAGCCTCCGGTCACCGCCGCTCTCATTGCCGCCAATTCTCTCGTCTACCTACGCCCGGCGTTCCTCGAACCCATCCTCCCTTCCATCCATGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAACAATGACTTGAAGAGGTTCTTCTTGTCACCGTTTTACCATGTGGGAGAGTCTCATCTGGTTTACAATATGCTCTCGCTGTTGTGGAAGGGAATTAAGTTGGAGTCTTCGATGGATAGCACCGAATTTGCATCCATGGTTGCTGTGTTACTTGGCATGTCCCAAGGAATCACATTGATGCTTTCGAAAGCGTTGCTGGTTTTGTTTGACTATGAAAAGGCTTATTATTCGGAGTATGCTGTCGGGTTTTCTGGGGTGATATTTGCGATGAAGGTGGTTCTTAATAATCAGTCTGGGAACTATAGTTATGTGCATGGGATTCCCATGCCATCGCGTTATGCTGCTTGGGCGGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGTGTGTCTTTTATTGGTCATTTGGGTGGAATACTTGCCGGGTTACTGTATCTGCGGTTGAGGGGTGCATATTCGGGTTCAGACCCACTTACTTTGGTCATCAGAGGTGTTACTGATGTACTGAAATTGCCCATGAGGTTTTTAAGACGAGTGTTTCCATTCAGAAGGAGGCAAATATCTGGTAGAGGCCCAGTTGGTGGGAGACGTAGAGGAATAGCTGTGGCGGATTGGAGGTGCAATGCTTGTACATATGAGAATTCTGGTTGGTTGGATGCATGTGAAATGTGTAACACAAACAGGAATGACAGTGGCAGTGGCAACACCATGGCGTCGCGTCCTTTGCCACATTATTCTCGCGACCTTACTTTGGAACAATTAAGGCAGCTAAGGTTGGAAAGATTTGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

333

Amino Acids

37.4

Weight (kDa)

9.78

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 72 - 215 3e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 2 cut(s) 580, 785
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 129
AccII CGCG 3 cut(s) 541, 922, 945
AciI CCGC 8 cut(s) 38, 57, 99, 102, 114, 557, 643, 812
AclWI GGATC 3 cut(s) 9, 15, 22
AcsI RAATTY 2 cut(s) 332, 844
AcyI GRCGYC 2 cut(s) 177, 917
AfaI GTAC 2 cut(s) 708, 835
AfiI CCNNNNNNNGG 4 cut(s) 139, 580, 785, 955
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 586
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 806, 973
AluI AGCT 2 cut(s) 806, 973
Alw26I GTCTC 2 cut(s) 264, 784
AlwI GGATC 3 cut(s) 9, 15, 22
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 3 cut(s) 40, 548, 970
ApoI RAATTY 2 cut(s) 332, 844
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 2 cut(s) 140, 628
AsuHPI GGTGA 4 cut(s) 88, 185, 228, 475
AsuII TTCGAA 1 cut(s) 392
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 27, 535, 982
BccI CCATC 4 cut(s) 164, 176, 313, 544
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 2 cut(s) 140, 628
BcoDI GTCTC 2 cut(s) 264, 784
BfmI CTRYAG 1 cut(s) 508
BisI GCNGC 6 cut(s) 41, 57, 102, 114, 549, 971
BlsI GCNGC 6 cut(s) 42, 58, 103, 115, 550, 972
Bme1390I CCNGG 3 cut(s) 140, 588, 628
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 16, 585
BmrFI CCNGG 3 cut(s) 140, 588, 628
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 3 cut(s) 347, 375, 850
BmuI ACTGGG 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 974
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 140, 628
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 177, 917
BsaJI CCNNGG 3 cut(s) 342, 370, 912
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 580, 785, 955
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 779
Bse3DI GCAATG 2 cut(s) 108, 832
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 342, 370, 912
BseGI GGATG 5 cut(s) 156, 168, 198, 338, 865
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 4 cut(s) 139, 580, 785, 955
BseMI GCAATG 2 cut(s) 108, 832
BseNI ACTGG 1 cut(s) 779
BseXI GCAGC 3 cut(s) 27, 535, 982
Bsh1236I CGCG 3 cut(s) 541, 922, 945
BshFI GGCC 1 cut(s) 777
BshNI GGYRCC 1 cut(s) 583
BsiSI CCGG 4 cut(s) 73, 92, 140, 627
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 4 cut(s) 139, 580, 785, 955
BsmAI GTCTC 2 cut(s) 264, 784
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 1 cut(s) 777
Bsp119I TTCGAA 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 2 cut(s) 14, 20
Bsp19I CCATGG 2 cut(s) 342, 912
Bsp68I TCGCGA 1 cut(s) 945
BspACI CCGC 8 cut(s) 38, 57, 99, 102, 114, 557, 643, 812
BspANI GGCC 1 cut(s) 777
BspFNI CGCG 3 cut(s) 541, 922, 945
BspLI GGNNCC 2 cut(s) 16, 585
BspPI GGATC 3 cut(s) 9, 15, 22
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 108, 832
BsrFI RCCGGY 1 cut(s) 72
BsrGI TGTACA 1 cut(s) 833
BsrI ACTGG 1 cut(s) 779
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 342, 370, 912
BssMI GATC 2 cut(s) 14, 20
BssNI GRCGYC 2 cut(s) 177, 917
BssT1I CCWWGG 3 cut(s) 342, 370, 912
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 240, 636, 896
Bst6I CTCTTC 2 cut(s) 4, 215
BstACI GRCGYC 2 cut(s) 177, 917
BstAUI TGTACA 1 cut(s) 833
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 45, 61
BstDEI CTNAG 1 cut(s) 974
BstDSI CCRYGG 2 cut(s) 342, 912
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 5 cut(s) 156, 168, 198, 338, 865
BstFNI CGCG 3 cut(s) 541, 922, 945
BstKTI GATC 2 cut(s) 17, 23
BstMAI GTCTC 2 cut(s) 264, 784
BstMBI GATC 2 cut(s) 14, 20
BstMWI GCNNNNNNNGC 5 cut(s) 40, 53, 110, 554, 928
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 367, 867
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 138, 586, 626
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 3 cut(s) 541, 922, 945
BstV1I GCAGC 3 cut(s) 27, 535, 982
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 777
BtgI CCRYGG 2 cut(s) 342, 912
BtgZI GCGATG 2 cut(s) 488, 522
BtsCI GGATG 5 cut(s) 156, 168, 198, 338, 865
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 2 cut(s) 901, 907
BtuMI TCGCGA 1 cut(s) 945
Cac8I GCNNGC 2 cut(s) 45, 61
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 2 cut(s) 906, 911
Csp6I GTAC 2 cut(s) 707, 834
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 9 cut(s) 173, 248, 343, 364, 521, 532, 721, 864, 913
CviJI RGCY 6 cut(s) 76, 88, 428, 777, 806, 973
CviKI_1 RGCY 6 cut(s) 76, 88, 428, 777, 806, 973
CviQI GTAC 2 cut(s) 707, 834
DdeI CTNAG 1 cut(s) 974
DpnI GATC 2 cut(s) 16, 22
DpnII GATC 2 cut(s) 14, 20
Eam1104I CTCTTC 2 cut(s) 4, 215
EarI CTCTTC 2 cut(s) 4, 215
EciI GGCGGA 2 cut(s) 572, 827
Eco130I CCWWGG 3 cut(s) 342, 370, 912
Eco91I GGTNACC 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 3 cut(s) 342, 370, 912
EcoT22I ATGCAT 1 cut(s) 865
ErhI CCWWGG 3 cut(s) 342, 370, 912
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 9 cut(s) 176, 251, 346, 367, 524, 535, 724, 867, 916
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 352
FatI CATG 9 cut(s) 172, 247, 342, 363, 520, 531, 720, 863, 912
FauI CCCGC 1 cut(s) 45
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 6 cut(s) 41, 57, 102, 114, 549, 971
FokI GGATG 5 cut(s) 143, 155, 185, 325, 872
Fsp4HI GCNGC 6 cut(s) 41, 57, 102, 114, 549, 971
GluI GCNGC 6 cut(s) 41, 57, 102, 114, 549, 971
HaeIII GGCC 1 cut(s) 777
HapII CCGG 4 cut(s) 73, 92, 140, 627
HgaI GACGC 2 cut(s) 906, 911
Hin1I GRCGYC 2 cut(s) 177, 917
Hin1II CATG 9 cut(s) 176, 251, 346, 367, 524, 535, 724, 867, 916
HinfI GANTC 4 cut(s) 257, 311, 375, 526
HpaII CCGG 4 cut(s) 73, 92, 140, 627
HphI GGTGA 4 cut(s) 88, 185, 228, 475
Hpy166II GTNNAC 2 cut(s) 130, 271
Hpy188I TCNGA 4 cut(s) 439, 670, 692, 752
Hpy188III TCNNGA 4 cut(s) 18, 205, 574, 944
Hpy8I GTNNAC 2 cut(s) 130, 271
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 4 cut(s) 174, 289, 472, 747
HpyCH4III ACNGT 3 cut(s) 240, 636, 896
HpyCH4IV ACGT 2 cut(s) 177, 793
HpyCH4V TGCA 5 cut(s) 338, 520, 656, 825, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 53, 110, 554, 928
HpyF3I CTNAG 1 cut(s) 974
HpySE526I ACGT 2 cut(s) 177, 793
Hsp92I GRCGYC 2 cut(s) 177, 917
Hsp92II CATG 9 cut(s) 176, 251, 346, 367, 524, 535, 724, 867, 916
Kzo9I GATC 2 cut(s) 14, 20
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 3 cut(s) 27, 535, 982
LweI GCATC 3 cut(s) 347, 375, 850
MaeII ACGT 2 cut(s) 177, 793
MaeIII GTNAC 6 cut(s) 94, 234, 354, 630, 697, 875
MalI GATC 2 cut(s) 16, 22
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 14, 20
MboII GAAGA 4 cut(s) 21, 220, 232, 306
MflI RGATCY 1 cut(s) 14
MluCI AATT 6 cut(s) 118, 300, 332, 713, 844, 962
MlyI GAGTC 2 cut(s) 266, 320
MmeI TCCRAC 4 cut(s) 48, 288, 837, 960
Mph1103I ATGCAT 1 cut(s) 865
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 4 cut(s) 303, 489, 731, 965
MslI CAYNNNNRTG 2 cut(s) 383, 612
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 4 cut(s) 73, 92, 140, 627
MspR9I CCNGG 3 cut(s) 140, 588, 628
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 3 cut(s) 541, 922, 945
MwoI GCNNNNNNNGC 5 cut(s) 40, 53, 110, 554, 928
NciI CCSGG 2 cut(s) 140, 628
NcoI CCATGG 2 cut(s) 342, 912
NdeI CATATG 1 cut(s) 838
NdeII GATC 2 cut(s) 14, 20
NlaIII CATG 9 cut(s) 176, 251, 346, 367, 524, 535, 724, 867, 916
NlaIV GGNNCC 2 cut(s) 16, 585
NmuCI GTSAC 2 cut(s) 94, 234
NruI TCGCGA 1 cut(s) 945
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 367, 867
NspV TTCGAA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 375, 526
PflMI CCANNNNNTGG 2 cut(s) 580, 785
PkrI GCNGC 6 cut(s) 42, 58, 103, 115, 550, 972
PleI GAGTC 2 cut(s) 265, 319
PpsI GAGTC 2 cut(s) 265, 319
Psp6I CCWGG 1 cut(s) 586
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 16, 585
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 14
RruI TCGCGA 1 cut(s) 945
RsaI GTAC 2 cut(s) 708, 835
RsaNI GTAC 2 cut(s) 707, 834
RseI CAYNNNNRTG 2 cut(s) 383, 612
SaqAI TTAA 4 cut(s) 303, 489, 731, 965
SatI GCNGC 6 cut(s) 41, 57, 102, 114, 549, 971
Sau3AI GATC 2 cut(s) 14, 20
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 2 cut(s) 266, 320
ScrFI CCNGG 3 cut(s) 140, 588, 628
SfaNI GCATC 3 cut(s) 347, 375, 850
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 383, 612
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 6 cut(s) 118, 300, 332, 713, 844, 962
SsiI CCGC 8 cut(s) 38, 57, 99, 102, 114, 557, 643, 812
StyD4I CCNGG 3 cut(s) 138, 586, 626
StyI CCWWGG 3 cut(s) 342, 370, 912
TaaI ACNGT 3 cut(s) 240, 636, 896
TaiI ACGT 2 cut(s) 180, 796
TaqI TCGA 4 cut(s) 78, 150, 317, 392
TasI AATT 6 cut(s) 118, 300, 332, 713, 844, 962
TatI WGTACW 2 cut(s) 706, 833
TauI GCSGC 3 cut(s) 59, 104, 116
TfiI GAWTC 2 cut(s) 375, 526
Tru1I TTAA 4 cut(s) 303, 489, 731, 965
Tru9I TTAA 4 cut(s) 303, 489, 731, 965
TscAI CASTG 2 cut(s) 901, 907
TseFI GTSAC 2 cut(s) 94, 234
TseI GCWGC 3 cut(s) 40, 548, 970
Tsp45I GTSAC 2 cut(s) 94, 234
TspDTI ATGAA 2 cut(s) 435, 491
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 901, 907
Van91I CCANNNNNTGG 2 cut(s) 580, 785
XapI RAATTY 2 cut(s) 332, 844
XceI RCATGY 2 cut(s) 367, 867
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 224
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.