pycom16g11610

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011374
Physical Location & Seq
Reverse (-)
8076332 .. 8077803
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11610.1

Sequence Viewer

Length: 1005 bp
ATGGTGATTGGAAATCGAAGGCCGCGATCGAACGGAATGCTGCCGCTGCTGGCACTTCACGCCGTCAGTGAGTATTACAGGCTCGACCGGAAACCGCGCGTCACCGCCGGACTCATCGCCGCCAACGCTCTCGTCTACTTGCGCCCAGCTTTTCTCGACCATATTCTTCCATCTATTCAAGAAGTCGGGTTCAATCCTCACGTCATCCTCAAGTATGGGGACTTGAAGCGGTTCTTCTTGTCGCCTTTCTACCACGCCGGAGAGTCTCACTTGGTTTACAACATGCTCTCCCTGTTATGGAAGGGGATCCAGTTAGAATCTTCAATGGATAGTGCTGAATTTGCATCCATGGTTGCTGTCCTGCTGGGTATGTCCCAAGGAATGTCTCTGCTGATTTCCAAGTCCCTACTCATGTTCTTCGACTATGACCATTCTTACTACTATGAATACTCTATTGGGTTTTCTGGGGTTCTCTTTGCCATGAAGGTTGTGCTCAATTCACAGACCGAGAACAGTTATGTGTATGGAATTCCAATACCGTCACATTATGCTGCGTGGGCAGAATTAGCTCTTGCCCAAATGCTGGTACCTGGTGTCTCTTTTATTGGCCATTTGGGTGGAATACTTGCCGGTCTTGTCTATATCCGGCTGAGGGGTTCATATAATGGTTCTGACCCGCTTACTGCTATCTTCAGAGGTGTTTTTGGTGTGCTGAAATGGCCTGTGAGGTTTTTACAGCGCTTGTTTCCGCGGAGGCAAATATCCGGGAGAGGACGTGTTGGTGGGGGTCAGAGAGGAATGTCTGTAACTGGTTTCTGGAGGTGCCATGCTTGTACGTATGAGAATTCTGCTTGGCTAGATGTATGTGAAATGTGTTCGACAAATAGGAGAGGGGATGGCTATGGCAATGGCAGTGGCATTTCACCTCGATCACCACATTATTCCGGTGACCTTACTTTGGAAGAGTTACGACGGCGGAGGTTGGAAAGATTTGGTAGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

335

Amino Acids

37.57

Weight (kDa)

9.62

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 74 - 217 1.7e-21 Rhomboid domain
Zn_ribbon_RanBP PF00641 270 - 296 8.4e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 586
AccB1I GGYRCC 2 cut(s) 586, 822
AccB7I CCANNNNNTGG 1 cut(s) 583
AccI GTMKAC 1 cut(s) 135
AccII CGCG 4 cut(s) 25, 97, 99, 751
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 3 cut(s) 338, 528, 844
AcuI CTGAAG 1 cut(s) 676
AfaI GTAC 2 cut(s) 588, 835
AfeI AGCGCT 1 cut(s) 740
AfiI CCNNNNNNNGG 4 cut(s) 297, 583, 652, 958
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 4 cut(s) 179, 193, 226, 324
AjiI CACGTC 2 cut(s) 202, 776
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 2 cut(s) 149, 569
AluI AGCT 2 cut(s) 149, 569
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 3 cut(s) 270, 390, 601
AlwI GGATC 2 cut(s) 301, 314
Aor51HI AGCGCT 1 cut(s) 740
AoxI GGCC 3 cut(s) 20, 607, 719
ApeKI GCWGC 3 cut(s) 40, 46, 551
ApoI RAATTY 3 cut(s) 338, 528, 844
Asp700I GAANNNNTTC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 586
AspLEI GCGC 3 cut(s) 99, 144, 741
AsuC2I CCSGG 1 cut(s) 766
AsuHPI GGTGA 5 cut(s) 16, 94, 915, 924, 959
BalI TGGCCA 1 cut(s) 609
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 586, 822
Bbv12I GWGCWC 1 cut(s) 495
BbvCI CCTCAGC 1 cut(s) 650
BbvI GCAGC 3 cut(s) 27, 33, 538
BccI CCATC 3 cut(s) 178, 890, 993
BceAI ACGGC 2 cut(s) 47, 989
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 766
BcoDI GTCTC 3 cut(s) 270, 390, 601
BfaI CTAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 742
BisI GCNGC 6 cut(s) 23, 41, 44, 47, 120, 552
BlsI GCNGC 6 cut(s) 24, 42, 45, 48, 121, 553
Bme1390I CCNGG 2 cut(s) 591, 766
BmgBI CACGTC 2 cut(s) 202, 776
BmiI GGNNCC 3 cut(s) 308, 588, 824
BmrFI CCNGG 2 cut(s) 591, 766
BmsI GCATC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 838
Bpu10I CCTNAGC 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 766
BsaAI YACGTR 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 348, 376, 749
BsaWI WCCGGW 2 cut(s) 87, 944
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 760, 790
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 583, 652, 958
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 2 cut(s) 310, 814
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 348, 376, 749
BseGI GGATG 3 cut(s) 204, 344, 901
BseLI CCNNNNNNNGG 4 cut(s) 297, 583, 652, 958
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 310, 814
BseXI GCAGC 3 cut(s) 27, 33, 538
BseYI CCCAGC 2 cut(s) 145, 364
Bsh1236I CGCG 4 cut(s) 25, 97, 99, 751
Bsh1285I CGRYCG 2 cut(s) 29, 88
BshFI GGCC 3 cut(s) 22, 609, 721
BshNI GGYRCC 2 cut(s) 586, 822
BsiEI CGRYCG 2 cut(s) 29, 88
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 7 cut(s) 88, 108, 258, 630, 646, 765, 945
BslFI GGGAC 3 cut(s) 233, 358, 388
BslI CCNNNNNNNGG 4 cut(s) 297, 583, 652, 958
BsmAI GTCTC 3 cut(s) 270, 390, 601
BsmFI GGGAC 3 cut(s) 233, 358, 388
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 3 cut(s) 22, 609, 721
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 3 cut(s) 26, 306, 929
Bsp19I CCATGG 1 cut(s) 348
BspANI GGCC 3 cut(s) 22, 609, 721
BspCNI CTCAG 1 cut(s) 642
BspFNI CGCG 4 cut(s) 25, 97, 99, 751
BspLI GGNNCC 3 cut(s) 308, 588, 824
BspPI GGATC 2 cut(s) 301, 314
BspT107I GGYRCC 2 cut(s) 586, 822
BsrDI GCAATG 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 2 cut(s) 310, 814
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 348, 376, 749
BssMI GATC 3 cut(s) 26, 306, 929
BssT1I CCWWGG 2 cut(s) 348, 376
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 515, 540
Bst6I CTCTTC 1 cut(s) 957
BstBAI YACGTR 1 cut(s) 837
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 650
BstDSI CCRYGG 2 cut(s) 348, 749
BstEII GGTNACC 1 cut(s) 947
BstF5I GGATG 3 cut(s) 204, 344, 901
BstFNI CGCG 4 cut(s) 25, 97, 99, 751
BstH2I RGCGCY 1 cut(s) 742
BstHHI GCGC 3 cut(s) 99, 144, 741
BstKTI GATC 3 cut(s) 29, 309, 932
BstMAI GTCTC 3 cut(s) 270, 390, 601
BstMBI GATC 3 cut(s) 26, 306, 929
BstMCI CGRYCG 2 cut(s) 29, 88
BstMWI GCNNNNNNNGC 7 cut(s) 46, 59, 125, 341, 557, 566, 718
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 286
BstPI GGTNACC 1 cut(s) 947
BstSCI CCNGG 2 cut(s) 589, 764
BstSNI TACGTA 1 cut(s) 837
BstUI CGCG 4 cut(s) 25, 97, 99, 751
BstV1I GCAGC 3 cut(s) 27, 33, 538
BstX2I RGATCY 1 cut(s) 306
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 3 cut(s) 22, 609, 721
BtgI CCRYGG 2 cut(s) 348, 749
BtgZI GCGATG 1 cut(s) 100
BtrI CACGTC 2 cut(s) 202, 776
BtsCI GGATG 3 cut(s) 204, 344, 901
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 2 cut(s) 73, 919
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 3 cut(s) 99, 144, 741
Cfr10I RCCGGY 1 cut(s) 629
Cfr42I CCGCGG 1 cut(s) 752
CseI GACGC 1 cut(s) 88
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 2 cut(s) 587, 834
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 5 cut(s) 283, 349, 412, 481, 827
CviJI RGCY 9 cut(s) 22, 82, 149, 569, 609, 649, 721, 856, 900
CviKI_1 RGCY 9 cut(s) 22, 82, 149, 569, 609, 649, 721, 856, 900
CviQI GTAC 2 cut(s) 587, 834
DdeI CTNAG 1 cut(s) 650
DpnI GATC 3 cut(s) 28, 308, 931
DpnII GATC 3 cut(s) 26, 306, 929
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
EciI GGCGGA 1 cut(s) 991
Eco105I TACGTA 1 cut(s) 837
Eco130I CCWWGG 2 cut(s) 348, 376
Eco47III AGCGCT 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 676
Eco91I GGTNACC 1 cut(s) 947
EcoO65I GGTNACC 1 cut(s) 947
EcoRI GAATTC 2 cut(s) 528, 844
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 348, 376
ErhI CCWWGG 2 cut(s) 348, 376
FaeI CATG 5 cut(s) 286, 352, 415, 484, 830
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 3 cut(s) 233, 358, 388
FatI CATG 5 cut(s) 282, 348, 411, 480, 826
FauI CCCGC 1 cut(s) 684
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 6 cut(s) 23, 41, 44, 47, 120, 552
FokI GGATG 3 cut(s) 191, 331, 908
Fsp4HI GCNGC 6 cut(s) 23, 41, 44, 47, 120, 552
FspBI CTAG 1 cut(s) 857
GlaI GCGC 3 cut(s) 98, 143, 740
GluI GCNGC 6 cut(s) 23, 41, 44, 47, 120, 552
GsaI CCCAGC 2 cut(s) 149, 368
GsuI CTGGAG 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 742
HaeIII GGCC 3 cut(s) 22, 609, 721
HapII CCGG 7 cut(s) 88, 108, 258, 630, 646, 765, 945
HgaI GACGC 1 cut(s) 88
HhaI GCGC 3 cut(s) 99, 144, 741
Hin1II CATG 5 cut(s) 286, 352, 415, 484, 830
Hin6I GCGC 3 cut(s) 97, 142, 739
HinP1I GCGC 3 cut(s) 97, 142, 739
HinfI GANTC 3 cut(s) 111, 263, 317
HpaII CCGG 7 cut(s) 88, 108, 258, 630, 646, 765, 945
HphI GGTGA 5 cut(s) 16, 94, 915, 924, 959
Hpy166II GTNNAC 2 cut(s) 136, 277
Hpy188I TCNGA 3 cut(s) 673, 695, 792
Hpy188III TCNNGA 3 cut(s) 155, 179, 817
Hpy8I GTNNAC 2 cut(s) 136, 277
Hpy99I CGWCG 1 cut(s) 975
HpyAV CCTTC 3 cut(s) 12, 295, 478
HpyCH4III ACNGT 2 cut(s) 515, 540
HpyCH4IV ACGT 3 cut(s) 201, 775, 836
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 59, 125, 341, 557, 566, 718
HpyF3I CTNAG 1 cut(s) 650
HpySE526I ACGT 3 cut(s) 201, 775, 836
Hsp92II CATG 5 cut(s) 286, 352, 415, 484, 830
HspAI GCGC 3 cut(s) 97, 142, 739
KpnI GGTACC 1 cut(s) 590
KspI CCGCGG 1 cut(s) 752
Kzo9I GATC 3 cut(s) 26, 306, 929
Lsp1109I GCAGC 3 cut(s) 27, 33, 538
LweI GCATC 1 cut(s) 353
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 1 cut(s) 857
MaeII ACGT 3 cut(s) 201, 775, 836
MaeIII GTNAC 5 cut(s) 100, 540, 805, 947, 966
MalI GATC 3 cut(s) 28, 308, 931
MboI GATC 3 cut(s) 26, 306, 929
MboII GAAGA 6 cut(s) 158, 226, 312, 409, 682, 974
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 495
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 5 cut(s) 338, 496, 528, 563, 844
MluNI TGGCCA 1 cut(s) 609
MlyI GAGTC 2 cut(s) 105, 272
MmeI TCCRAC 1 cut(s) 963
Mox20I TGGCCA 1 cut(s) 609
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 615
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 46, 751
MspI CCGG 7 cut(s) 88, 108, 258, 630, 646, 765, 945
MspR9I CCNGG 2 cut(s) 591, 766
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 4 cut(s) 25, 97, 99, 751
MwoI GCNNNNNNNGC 7 cut(s) 46, 59, 125, 341, 557, 566, 718
NciI CCSGG 1 cut(s) 766
NcoI CCATGG 1 cut(s) 348
NdeII GATC 3 cut(s) 26, 306, 929
NlaIII CATG 5 cut(s) 286, 352, 415, 484, 830
NlaIV GGNNCC 3 cut(s) 308, 588, 824
NmuCI GTSAC 3 cut(s) 100, 540, 947
NspI RCATGY 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 764
PkrI GCNGC 6 cut(s) 24, 42, 45, 48, 121, 553
Ple19I CGATCG 1 cut(s) 29
PleI GAGTC 2 cut(s) 105, 271
PpsI GAGTC 2 cut(s) 105, 271
Ppu21I YACGTR 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 589
PspEI GGTNACC 1 cut(s) 947
PspFI CCCAGC 2 cut(s) 145, 364
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 308, 588, 824
PsuI RGATCY 1 cut(s) 306
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 2 cut(s) 588, 835
RsaNI GTAC 2 cut(s) 587, 834
RseI CAYNNNNRTG 1 cut(s) 615
SacII CCGCGG 1 cut(s) 752
SatI GCNGC 6 cut(s) 23, 41, 44, 47, 120, 552
Sau3AI GATC 3 cut(s) 26, 306, 929
SchI GAGTC 2 cut(s) 105, 272
ScrFI CCNGG 2 cut(s) 591, 766
SduI GDGCHC 1 cut(s) 495
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 752
SgrBI CCGCGG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SnaBI TACGTA 1 cut(s) 837
Sse9I AATT 5 cut(s) 338, 496, 528, 563, 844
SspMI CTAG 1 cut(s) 857
StyD4I CCNGG 2 cut(s) 589, 764
StyI CCWWGG 2 cut(s) 348, 376
TaaI ACNGT 2 cut(s) 515, 540
TaiI ACGT 3 cut(s) 204, 778, 839
TaqI TCGA 7 cut(s) 16, 29, 84, 156, 420, 878, 928
TaqII GACCGA 1 cut(s) 521
TasI AATT 5 cut(s) 338, 496, 528, 563, 844
TauI GCSGC 3 cut(s) 25, 46, 122
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 2 cut(s) 73, 919
TseFI GTSAC 3 cut(s) 100, 540, 947
TseI GCWGC 3 cut(s) 40, 46, 551
Tsp45I GTSAC 3 cut(s) 100, 540, 947
TspDTI ATGAA 3 cut(s) 459, 497, 648
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 2 cut(s) 73, 919
Van91I CCANNNNNTGG 1 cut(s) 583
XapI RAATTY 3 cut(s) 338, 528, 844
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.