Rh4CG300500

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011374
Physical Location & Seq
Forward (+)
56095712 .. 56097000
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG300500.1

Sequence Viewer

Length: 1152 bp
ATGGGCCTGGTCACGCATACGAATAAAAGGAAAGCGGCAGAAATTAGAGAAAGAAAAAGAAAAACCGCGAAGCGTCTGGACTCTCTGGAATGTGCTTGTCGTGAACAAGGAGGCAAATCCAAATCGAAGATCAAATCGGAAACCCTAAACACGATGGAGAGAAGAGGATCCCGATCCAACGGAATGTTGCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACAGGCTCGACAGGAAGCCTCCCGTCACCGCCGCACTCATTGCCGCCAATTCTCTCGTCTACCTACGCCCCGCCTTCCTCGAACCCATTCTCCCTTCCATTCACGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAATAAGGACTTGAAGCGGTTCTTGCTGTCACCATTTTACCATGTGGGAGAGTCTCATCTGGTTTACAACATGCTCTCGCTTTTATGGAAGGGAATCAAGTTGGAGTCCTCCATGGATAGTGCTGAGTTTGCATCCATGGTTGCTGTGCTACTCGGTATGTCCCAAGGGATCACACTGCTGCTTTCGAAAGCGCTGCTCGTCTTGTTTGACTATGAGAAGGCTTATTATTCCGAATACGCTGTTGGGTTTTCTGGGGTGATATTTGCAATGAAGGTGGTTCTCAATTCGCAGTCCGGAAACTATAGTTATGTTCATGGAATTCCGATGCCGTCGCGTTATGCTGCTTGGGCGGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGTGTGTCTTTCATTGGTCATTTGGGTGGGATGCTCGCCGGGTTTCTGTATCTCCGATTGAGGAGTGCATATTCGGGCTCAGACCCGCTTACTTTAGCTCTCAGAGGTGTTACTAATGTACTAGAATTGCCTATGCGGTTCTTAAGAAGAGTGTTTCCATTCAGACGGAGGCAGGTATCTGGTAGAGGGCCGGTTGGTGGGAGACGTAGAGGAATAGCTATGGCGGATTGGAGGTGCAGTGCTTGTACATATGAAAACTCTGGTTGGTTGGATGCATGTGAAATGTGTGGCACAAATAGGAATGACAATGGCAATGCCAATCCCATGGCGTCGCATCCTTTGCCACAATATTCACGTGACCTTACTTTGGAAGAATTAAGGCAGCTAAGGTTGGAAAGATTTGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

383

Amino Acids

43.08

Weight (kDa)

9.87

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 123 - 267 2.4e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 736
AccB7I CCANNNNNTGG 1 cut(s) 733
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 68, 694
AccIII TCCGGA 1 cut(s) 653
AclWI GGATC 4 cut(s) 162, 168, 175, 536
AcsI RAATTY 1 cut(s) 678
AcvI CACGTG 1 cut(s) 1097
AcyI GRCGYC 2 cut(s) 330, 1070
AfaI GTAC 2 cut(s) 861, 988
AfeI AGCGCT 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 733, 938, 1108
AflII CTTAAG 1 cut(s) 883
AgsI TTSAA 2 cut(s) 340, 373
AjnI CCWGG 2 cut(s) 6, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 3 cut(s) 839, 959, 1126
AluI AGCT 3 cut(s) 839, 959, 1126
Alw26I GTCTC 2 cut(s) 417, 937
AlwI GGATC 4 cut(s) 162, 168, 175, 536
Aor13HI TCCGGA 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 552
AoxI GGCC 2 cut(s) 4, 929
ApeKI GCWGC 5 cut(s) 193, 538, 553, 701, 1123
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 2 cut(s) 309, 377
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 4, 929
AsuC2I CCSGG 1 cut(s) 781
AsuHPI GGTGA 4 cut(s) 241, 338, 381, 628
AsuII TTCGAA 1 cut(s) 545
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 821
BbrPI CACGTG 1 cut(s) 1097
BbvI GCAGC 5 cut(s) 180, 525, 540, 688, 1135
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 2 cut(s) 8, 741
BcnI CCSGG 1 cut(s) 781
BcoDI GTCTC 2 cut(s) 417, 937
BfaI CTAG 1 cut(s) 863
BfmI CTRYAG 1 cut(s) 661
BfoI RGCGCY 1 cut(s) 554
BfrI CTTAAG 1 cut(s) 883
BfuAI ACCTGC 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 8, 741, 781
BmgT120I GGNCC 2 cut(s) 4, 929
BmiI GGNNCC 2 cut(s) 169, 738
BmrFI CCNGG 3 cut(s) 8, 741, 781
BmsI GCATC 5 cut(s) 500, 675, 762, 1003, 1084
Bpu10I CCTNAGC 1 cut(s) 1127
Bpu14I TTCGAA 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 781
BsaAI YACGTR 1 cut(s) 1097
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 330, 1070
BsaJI CCNNGG 4 cut(s) 471, 495, 523, 1065
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 964, 994
Bsc4I CCNNNNNNNGG 3 cut(s) 733, 938, 1108
Bse118I RCCGGY 1 cut(s) 931
Bse3DI GCAATG 3 cut(s) 261, 633, 1060
Bse8I GATNNNNATC 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 653
BseBI CCWGG 2 cut(s) 8, 741
BseDI CCNNGG 4 cut(s) 471, 495, 523, 1065
BseGI GGATG 5 cut(s) 351, 491, 777, 1018, 1075
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 733, 938, 1108
BseMI GCAATG 3 cut(s) 261, 633, 1060
BseMII CTCAG 3 cut(s) 474, 834, 856
BseRI GAGGAG 1 cut(s) 817
BseXI GCAGC 5 cut(s) 180, 525, 540, 688, 1135
BsgI GTGCAG 1 cut(s) 997
Bsh1236I CGCG 2 cut(s) 68, 694
BshFI GGCC 2 cut(s) 6, 931
BshNI GGYRCC 1 cut(s) 736
BsiSI CCGG 3 cut(s) 654, 780, 932
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 3 cut(s) 733, 938, 1108
BsmAI GTCTC 2 cut(s) 417, 937
BsmBI CGTCTC 1 cut(s) 937
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 2 cut(s) 6, 931
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 1 cut(s) 821
Bsp13I TCCGGA 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 986
Bsp143I GATC 4 cut(s) 129, 167, 173, 528
Bsp19I CCATGG 3 cut(s) 471, 495, 1065
BspANI GGCC 2 cut(s) 6, 931
BspCNI CTCAG 3 cut(s) 475, 833, 855
BspEI TCCGGA 1 cut(s) 653
BspFNI CGCG 2 cut(s) 68, 694
BspLI GGNNCC 2 cut(s) 169, 738
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 4 cut(s) 162, 168, 175, 536
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 261, 633, 1060
BsrFI RCCGGY 1 cut(s) 931
BsrGI TGTACA 1 cut(s) 986
BssAI RCCGGY 1 cut(s) 931
BssECI CCNNGG 4 cut(s) 471, 495, 523, 1065
BssMI GATC 4 cut(s) 129, 167, 173, 528
BssNI GRCGYC 2 cut(s) 330, 1070
BssT1I CCWWGG 4 cut(s) 471, 495, 523, 1065
Bst2UI CCWGG 2 cut(s) 8, 741
Bst6I CTCTTC 2 cut(s) 157, 883
BstACI GRCGYC 2 cut(s) 330, 1070
BstAFI CTTAAG 1 cut(s) 883
BstAPI GCANNNNNTGC 2 cut(s) 263, 1081
BstAUI TGTACA 1 cut(s) 986
BstBAI YACGTR 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 198, 214, 777
BstDEI CTNAG 4 cut(s) 483, 820, 842, 1127
BstDSI CCRYGG 3 cut(s) 471, 495, 1065
BstF5I GGATG 5 cut(s) 351, 491, 777, 1018, 1075
BstFNI CGCG 2 cut(s) 68, 694
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 4 cut(s) 132, 170, 176, 531
BstMAI GTCTC 2 cut(s) 417, 937
BstMBI GATC 4 cut(s) 129, 167, 173, 528
BstMWI GCNNNNNNNGC 6 cut(s) 206, 263, 382, 488, 707, 1081
BstNI CCWGG 2 cut(s) 8, 741
BstNSI RCATGY 2 cut(s) 433, 1020
BstSCI CCNGG 3 cut(s) 6, 739, 779
BstSFI CTRYAG 1 cut(s) 661
BstUI CGCG 2 cut(s) 68, 694
BstV1I GCAGC 5 cut(s) 180, 525, 540, 688, 1135
BstX2I RGATCY 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 2 cut(s) 6, 931
BtgI CCRYGG 3 cut(s) 471, 495, 1065
BtsCI GGATG 5 cut(s) 351, 491, 777, 1018, 1075
BtsI GCAGTG 2 cut(s) 533, 985
BtsIMutI CAGTG 2 cut(s) 533, 985
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 3 cut(s) 198, 214, 777
CfoI GCGC 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 931
Cfr13I GGNCC 2 cut(s) 4, 929
CseI GACGC 2 cut(s) 62, 1059
Csp6I GTAC 2 cut(s) 860, 987
CspCI CAANNNNNGTGG 2 cut(s) 615, 650
CviAII CATG 7 cut(s) 401, 430, 472, 496, 674, 1017, 1066
CviJI RGCY 9 cut(s) 6, 229, 241, 581, 819, 839, 931, 959, 1126
CviKI_1 RGCY 9 cut(s) 6, 229, 241, 581, 819, 839, 931, 959, 1126
CviQI GTAC 2 cut(s) 860, 987
DdeI CTNAG 4 cut(s) 483, 820, 842, 1127
DpnI GATC 4 cut(s) 131, 169, 175, 530
DpnII GATC 4 cut(s) 129, 167, 173, 528
Eam1104I CTCTTC 2 cut(s) 157, 883
EarI CTCTTC 2 cut(s) 157, 883
EciI GGCGGA 2 cut(s) 725, 980
Eco130I CCWWGG 4 cut(s) 471, 495, 523, 1065
Eco24I GRGCYC 1 cut(s) 821
Eco47III AGCGCT 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 6, 739
EcoT14I CCWWGG 4 cut(s) 471, 495, 523, 1065
EcoT22I ATGCAT 1 cut(s) 1018
EcoT38I GRGCYC 1 cut(s) 821
ErhI CCWWGG 4 cut(s) 471, 495, 523, 1065
Esp3I CGTCTC 1 cut(s) 937
FaeI CATG 7 cut(s) 404, 433, 475, 499, 677, 1020, 1069
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 505
FatI CATG 7 cut(s) 400, 429, 471, 495, 673, 1016, 1065
FauI CCCGC 2 cut(s) 301, 834
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 1 cut(s) 282
FokI GGATG 5 cut(s) 338, 478, 784, 1025, 1062
FriOI GRGCYC 1 cut(s) 821
FspBI CTAG 1 cut(s) 863
GlaI GCGC 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 2 cut(s) 6, 931
HapII CCGG 3 cut(s) 654, 780, 932
HgaI GACGC 2 cut(s) 62, 1059
HhaI GCGC 1 cut(s) 553
Hin1I GRCGYC 2 cut(s) 330, 1070
Hin1II CATG 7 cut(s) 404, 433, 475, 499, 677, 1020, 1069
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HinfI GANTC 4 cut(s) 80, 410, 453, 464
HpaII CCGG 3 cut(s) 654, 780, 932
HphI GGTGA 4 cut(s) 241, 338, 381, 628
Hpy166II GTNNAC 3 cut(s) 104, 283, 424
Hpy188I TCNGA 7 cut(s) 139, 592, 684, 797, 823, 845, 905
Hpy188III TCNNGA 8 cut(s) 77, 86, 101, 171, 326, 358, 654, 727
Hpy8I GTNNAC 3 cut(s) 104, 283, 424
Hpy99I CGWCG 3 cut(s) 332, 694, 1075
HpyAV CCTTC 5 cut(s) 307, 327, 442, 571, 625
HpyCH4IV ACGT 3 cut(s) 330, 946, 1096
HpyCH4V TGCA 5 cut(s) 491, 626, 809, 978, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 263, 382, 488, 707, 1081
HpyF3I CTNAG 4 cut(s) 483, 820, 842, 1127
HpySE526I ACGT 3 cut(s) 330, 946, 1096
Hsp92I GRCGYC 2 cut(s) 330, 1070
Hsp92II CATG 7 cut(s) 404, 433, 475, 499, 677, 1020, 1069
HspAI GCGC 1 cut(s) 551
Kpn2I TCCGGA 1 cut(s) 653
Kzo9I GATC 4 cut(s) 129, 167, 173, 528
Lsp1109I GCAGC 5 cut(s) 180, 525, 540, 688, 1135
LweI GCATC 5 cut(s) 500, 675, 762, 1003, 1084
MaeI CTAG 1 cut(s) 863
MaeII ACGT 3 cut(s) 330, 946, 1096
MaeIII GTNAC 5 cut(s) 10, 247, 387, 850, 1097
MalI GATC 4 cut(s) 131, 169, 175, 530
MboI GATC 4 cut(s) 129, 167, 173, 528
MboII GAAGA 4 cut(s) 139, 174, 900, 1124
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 6 cut(s) 42, 271, 643, 678, 866, 1115
MlyI GAGTC 3 cut(s) 74, 419, 473
MmeI TCCRAC 4 cut(s) 201, 441, 990, 1113
Mph1103I ATGCAT 1 cut(s) 1018
MroI TCCGGA 1 cut(s) 653
MroXI GAANNNNTTC 2 cut(s) 309, 377
MseI TTAA 2 cut(s) 884, 1118
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 3 cut(s) 654, 780, 932
MspR9I CCNGG 3 cut(s) 8, 741, 781
MvaI CCWGG 2 cut(s) 8, 741
MvnI CGCG 2 cut(s) 68, 694
MwoI GCNNNNNNNGC 6 cut(s) 206, 263, 382, 488, 707, 1081
NciI CCSGG 1 cut(s) 781
NcoI CCATGG 3 cut(s) 471, 495, 1065
NdeI CATATG 1 cut(s) 991
NdeII GATC 4 cut(s) 129, 167, 173, 528
NlaIII CATG 7 cut(s) 404, 433, 475, 499, 677, 1020, 1069
NlaIV GGNNCC 2 cut(s) 169, 738
NmuCI GTSAC 4 cut(s) 10, 247, 387, 1097
NsiI ATGCAT 1 cut(s) 1018
NspI RCATGY 2 cut(s) 433, 1020
NspV TTCGAA 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 2 cut(s) 309, 377
PfeI GAWTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 733
PleI GAGTC 3 cut(s) 74, 418, 472
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 3 cut(s) 74, 418, 472
Ppu21I YACGTR 1 cut(s) 1097
Psp6I CCWGG 2 cut(s) 6, 739
PspCI CACGTG 1 cut(s) 1097
PspGI CCWGG 2 cut(s) 6, 739
PspN4I GGNNCC 2 cut(s) 169, 738
PspPI GGNCC 2 cut(s) 4, 929
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 861, 988
RsaNI GTAC 2 cut(s) 860, 987
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 2 cut(s) 884, 1118
Sau3AI GATC 4 cut(s) 129, 167, 173, 528
Sau96I GGNCC 2 cut(s) 4, 929
SchI GAGTC 3 cut(s) 74, 419, 473
ScrFI CCNGG 3 cut(s) 8, 741, 781
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 5 cut(s) 500, 675, 762, 1003, 1084
SfcI CTRYAG 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 356, 883
SmoI CTYRAG 2 cut(s) 356, 883
Sse9I AATT 6 cut(s) 42, 271, 643, 678, 866, 1115
SspI AATATT 1 cut(s) 1091
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 3 cut(s) 6, 739, 779
StyI CCWWGG 4 cut(s) 471, 495, 523, 1065
TaiI ACGT 3 cut(s) 333, 949, 1099
TaqI TCGA 4 cut(s) 125, 231, 303, 545
TasI AATT 6 cut(s) 42, 271, 643, 678, 866, 1115
TatI WGTACW 2 cut(s) 859, 986
TauI GCSGC 5 cut(s) 38, 193, 212, 257, 269
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 2 cut(s) 884, 1118
Tru9I TTAA 2 cut(s) 884, 1118
TscAI CASTG 2 cut(s) 540, 985
TseFI GTSAC 4 cut(s) 10, 247, 387, 1097
TseI GCWGC 5 cut(s) 193, 538, 553, 701, 1123
Tsp45I GTSAC 4 cut(s) 10, 247, 387, 1097
TspDTI ATGAA 4 cut(s) 644, 662, 742, 1008
TspGWI ACGGA 2 cut(s) 195, 922
TspRI CASTG 2 cut(s) 540, 985
Van91I CCANNNNNTGG 1 cut(s) 733
Vha464I CTTAAG 1 cut(s) 883
XapI RAATTY 1 cut(s) 678
XceI RCATGY 2 cut(s) 433, 1020
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 309, 377
XspI CTAG 1 cut(s) 863
ZraI GACGTC 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.