Rmu_sc0009599.1_g000019

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009599.1
OG0011374
Physical Location & Seq
Reverse (-)
64234 .. 65531
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009599.1_g000019.1.cds

Sequence Viewer

Length: 1161 bp
atgaggcaatgggccgggtcacgcatacgaataaaaggacagcggaagaaattagagaaaagaaaaagaaaaaccgcgaagcgtctggactctctggaatgtgcttgtcgtgagcaaggaggcaaatccaaatcgaagatcaaatcggaaaccctacacacgatggagagaagaggatcccgatccaacggaatgttgccgctgctcgcactccacgccgccagcgagtattacaggctcgacaggaagcctcccgtcaccgccgccctcattgccgccaattctctcgtctacttacgccccgccttcctcgaacccattctcccttccattcacgacgtctggttcaaccctcacctcatcctcaagaataaggacttgaagcggttcttgctgtcaccgttttaccatgtgggagagtctcatctggtttacaacatgctctcgcttttatggaagggaatcaagttggagtcctccatggatagtgctgagtttgcatccatggttgctgtgctactcggtatgtcccaagggatcacactgctgctttcgaaagcgctgctcgttttgtttgactatgagaaggcttattattccgaatacgctgttgggttttctggggtgatatttgcaatgaaggtggttctcaattcgcagtccggaaactatagttatgttcatggaattccaatgccgtcgcgttatgctgcttgggcggagttggttcttatccagatgttggtgcctggtgtgtctttcattggtcatttgggtgggatgcttgccgggtttctgtatctccgattgaggagtgcatattcgggctcagacccgcttactttagctctcagaggtgttactaatgtactagaattgcctatgcggttcttaagaagagtgtttccattcagacggaggcaggtatctggtagagggccggttggtgggagacgtagaggaatagctatggcggattggaggtgcagtgcttgtacatatgaaaactctggttggttggatgcatgtgaaatgtgtggcacaaataggaatgacaatggcaatgccaatcccatggcgtcgcatcctttgccacaatattcacgtgaccttactttggaagaattaaggcagctaaggttggaaagatttggtagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

386

Amino Acids

43.62

Weight (kDa)

10.05

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 742
AccI GTMKAC 1 cut(s) 291
AccII CGCG 2 cut(s) 77, 703
AccIII TCCGGA 1 cut(s) 662
AclWI GGATC 4 cut(s) 171, 177, 184, 545
AcsI RAATTY 1 cut(s) 687
AcvI CACGTG 1 cut(s) 1106
AcyI GRCGYC 2 cut(s) 339, 1079
AfaI GTAC 2 cut(s) 870, 997
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 3 cut(s) 742, 947, 1117
AflII CTTAAG 1 cut(s) 892
AgsI TTSAA 2 cut(s) 349, 382
AjnI CCWGG 1 cut(s) 748
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 3 cut(s) 848, 968, 1135
AluI AGCT 3 cut(s) 848, 968, 1135
Alw26I GTCTC 2 cut(s) 426, 946
AlwI GGATC 4 cut(s) 171, 177, 184, 545
Aor13HI TCCGGA 1 cut(s) 662
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 2 cut(s) 12, 938
ApeKI GCWGC 5 cut(s) 202, 547, 562, 710, 1132
ApoI RAATTY 1 cut(s) 687
Asp700I GAANNNNTTC 2 cut(s) 318, 386
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 12, 938
AsuC2I CCSGG 2 cut(s) 16, 790
AsuHPI GGTGA 4 cut(s) 250, 347, 390, 637
AsuII TTCGAA 1 cut(s) 554
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 830
BbrPI CACGTG 1 cut(s) 1106
BbvI GCAGC 5 cut(s) 189, 534, 549, 697, 1144
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 682
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 2 cut(s) 16, 790
BcoDI GTCTC 2 cut(s) 426, 946
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 563
BfrI CTTAAG 1 cut(s) 892
BfuAI ACCTGC 1 cut(s) 913
BisI GCNGC 9 cut(s) 200, 203, 219, 264, 276, 548, 563, 711, 1133
BlsI GCNGC 9 cut(s) 201, 204, 220, 265, 277, 549, 564, 712, 1134
Bme1390I CCNGG 3 cut(s) 16, 750, 790
BmgT120I GGNCC 2 cut(s) 12, 938
BmiI GGNNCC 2 cut(s) 178, 747
BmrFI CCNGG 3 cut(s) 16, 750, 790
BmsI GCATC 4 cut(s) 509, 771, 1012, 1093
Bpu10I CCTNAGC 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 16, 790
BsaAI YACGTR 1 cut(s) 1106
BsaBI GATNNNNATC 1 cut(s) 181
BsaHI GRCGYC 2 cut(s) 339, 1079
BsaJI CCNNGG 4 cut(s) 480, 504, 532, 1074
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 4 cut(s) 306, 336, 973, 1003
Bsc4I CCNNNNNNNGG 3 cut(s) 742, 947, 1117
Bse118I RCCGGY 1 cut(s) 940
Bse3DI GCAATG 4 cut(s) 14, 270, 642, 1069
Bse8I GATNNNNATC 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 662
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 4 cut(s) 480, 504, 532, 1074
BseGI GGATG 5 cut(s) 360, 500, 786, 1027, 1084
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 3 cut(s) 742, 947, 1117
BseMI GCAATG 4 cut(s) 14, 270, 642, 1069
BseMII CTCAG 3 cut(s) 483, 843, 865
BseRI GAGGAG 1 cut(s) 826
BseXI GCAGC 5 cut(s) 189, 534, 549, 697, 1144
BsgI GTGCAG 1 cut(s) 1006
Bsh1236I CGCG 2 cut(s) 77, 703
BshFI GGCC 2 cut(s) 14, 940
BshNI GGYRCC 1 cut(s) 745
BsiSI CCGG 4 cut(s) 15, 663, 789, 941
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 742, 947, 1117
BsmAI GTCTC 2 cut(s) 426, 946
BsmBI CGTCTC 1 cut(s) 946
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 2 cut(s) 14, 940
Bsp119I TTCGAA 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 830
Bsp13I TCCGGA 1 cut(s) 662
Bsp1407I TGTACA 1 cut(s) 995
Bsp143I GATC 4 cut(s) 138, 176, 182, 537
Bsp19I CCATGG 3 cut(s) 480, 504, 1074
BspANI GGCC 2 cut(s) 14, 940
BspCNI CTCAG 3 cut(s) 484, 842, 864
BspEI TCCGGA 1 cut(s) 662
BspFNI CGCG 2 cut(s) 77, 703
BspLI GGNNCC 2 cut(s) 178, 747
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 4 cut(s) 171, 177, 184, 545
BspT104I TTCGAA 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 745
BspTI CTTAAG 1 cut(s) 892
BsrDI GCAATG 4 cut(s) 14, 270, 642, 1069
BsrFI RCCGGY 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 995
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 4 cut(s) 480, 504, 532, 1074
BssMI GATC 4 cut(s) 138, 176, 182, 537
BssNI GRCGYC 2 cut(s) 339, 1079
BssT1I CCWWGG 4 cut(s) 480, 504, 532, 1074
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 166, 892
BstACI GRCGYC 2 cut(s) 339, 1079
BstAFI CTTAAG 1 cut(s) 892
BstAPI GCANNNNNTGC 1 cut(s) 1090
BstAUI TGTACA 1 cut(s) 995
BstBAI YACGTR 1 cut(s) 1106
BstBI TTCGAA 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 207, 223, 786
BstDEI CTNAG 4 cut(s) 492, 829, 851, 1136
BstDSI CCRYGG 3 cut(s) 480, 504, 1074
BstF5I GGATG 5 cut(s) 360, 500, 786, 1027, 1084
BstFNI CGCG 2 cut(s) 77, 703
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 4 cut(s) 141, 179, 185, 540
BstMAI GTCTC 2 cut(s) 426, 946
BstMBI GATC 4 cut(s) 138, 176, 182, 537
BstMWI GCNNNNNNNGC 6 cut(s) 215, 272, 391, 497, 716, 1090
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 2 cut(s) 442, 1029
BstSCI CCNGG 3 cut(s) 14, 748, 788
BstSFI CTRYAG 1 cut(s) 670
BstUI CGCG 2 cut(s) 77, 703
BstV1I GCAGC 5 cut(s) 189, 534, 549, 697, 1144
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 2 cut(s) 14, 940
BtgI CCRYGG 3 cut(s) 480, 504, 1074
BtsCI GGATG 5 cut(s) 360, 500, 786, 1027, 1084
BtsI GCAGTG 2 cut(s) 542, 994
BtsIMutI CAGTG 2 cut(s) 542, 994
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 3 cut(s) 207, 223, 786
CfoI GCGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 2 cut(s) 12, 938
CseI GACGC 2 cut(s) 71, 1068
Csp6I GTAC 2 cut(s) 869, 996
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 7 cut(s) 410, 439, 481, 505, 683, 1026, 1075
CviJI RGCY 9 cut(s) 14, 238, 250, 590, 828, 848, 940, 968, 1135
CviKI_1 RGCY 9 cut(s) 14, 238, 250, 590, 828, 848, 940, 968, 1135
CviQI GTAC 2 cut(s) 869, 996
DdeI CTNAG 4 cut(s) 492, 829, 851, 1136
DpnI GATC 4 cut(s) 140, 178, 184, 539
DpnII GATC 4 cut(s) 138, 176, 182, 537
Eam1104I CTCTTC 2 cut(s) 166, 892
EarI CTCTTC 2 cut(s) 166, 892
EciI GGCGGA 2 cut(s) 734, 989
Eco130I CCWWGG 4 cut(s) 480, 504, 532, 1074
Eco24I GRGCYC 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 561
Eco72I CACGTG 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 687
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 4 cut(s) 480, 504, 532, 1074
EcoT22I ATGCAT 1 cut(s) 1027
EcoT38I GRGCYC 1 cut(s) 830
ErhI CCWWGG 4 cut(s) 480, 504, 532, 1074
Esp3I CGTCTC 1 cut(s) 946
FaeI CATG 7 cut(s) 413, 442, 484, 508, 686, 1029, 1078
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 514
FatI CATG 7 cut(s) 409, 438, 480, 504, 682, 1025, 1074
FauI CCCGC 2 cut(s) 310, 843
FauNDI CATATG 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 9 cut(s) 200, 203, 219, 264, 276, 548, 563, 711, 1133
FokI GGATG 5 cut(s) 347, 487, 793, 1034, 1071
FriOI GRGCYC 1 cut(s) 830
Fsp4HI GCNGC 9 cut(s) 200, 203, 219, 264, 276, 548, 563, 711, 1133
FspBI CTAG 1 cut(s) 872
GlaI GCGC 1 cut(s) 561
GluI GCNGC 9 cut(s) 200, 203, 219, 264, 276, 548, 563, 711, 1133
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 2 cut(s) 14, 940
HapII CCGG 4 cut(s) 15, 663, 789, 941
HgaI GACGC 2 cut(s) 71, 1068
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 2 cut(s) 339, 1079
Hin1II CATG 7 cut(s) 413, 442, 484, 508, 686, 1029, 1078
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 4 cut(s) 89, 419, 462, 473
HpaII CCGG 4 cut(s) 15, 663, 789, 941
HphI GGTGA 4 cut(s) 250, 347, 390, 637
Hpy166II GTNNAC 2 cut(s) 292, 433
Hpy188I TCNGA 6 cut(s) 148, 601, 806, 832, 854, 914
Hpy188III TCNNGA 8 cut(s) 86, 95, 110, 180, 335, 367, 663, 736
Hpy8I GTNNAC 2 cut(s) 292, 433
Hpy99I CGWCG 3 cut(s) 341, 703, 1084
HpyAV CCTTC 5 cut(s) 316, 336, 451, 580, 634
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 3 cut(s) 339, 955, 1105
HpyCH4V TGCA 5 cut(s) 500, 635, 818, 987, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 272, 391, 497, 716, 1090
HpyF3I CTNAG 4 cut(s) 492, 829, 851, 1136
HpySE526I ACGT 3 cut(s) 339, 955, 1105
Hsp92I GRCGYC 2 cut(s) 339, 1079
Hsp92II CATG 7 cut(s) 413, 442, 484, 508, 686, 1029, 1078
HspAI GCGC 1 cut(s) 560
Kpn2I TCCGGA 1 cut(s) 662
Kzo9I GATC 4 cut(s) 138, 176, 182, 537
Lsp1109I GCAGC 5 cut(s) 189, 534, 549, 697, 1144
LweI GCATC 4 cut(s) 509, 771, 1012, 1093
MaeI CTAG 1 cut(s) 872
MaeII ACGT 3 cut(s) 339, 955, 1105
MaeIII GTNAC 5 cut(s) 18, 256, 396, 859, 1106
MalI GATC 4 cut(s) 140, 178, 184, 539
MboI GATC 4 cut(s) 138, 176, 182, 537
MboII GAAGA 5 cut(s) 58, 148, 183, 909, 1133
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 830
MluCI AATT 6 cut(s) 50, 280, 652, 687, 875, 1124
MlyI GAGTC 3 cut(s) 83, 428, 482
MmeI TCCRAC 4 cut(s) 210, 450, 999, 1122
Mph1103I ATGCAT 1 cut(s) 1027
MroI TCCGGA 1 cut(s) 662
MroXI GAANNNNTTC 2 cut(s) 318, 386
MseI TTAA 2 cut(s) 893, 1127
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 43, 202
MspCI CTTAAG 1 cut(s) 892
MspI CCGG 4 cut(s) 15, 663, 789, 941
MspR9I CCNGG 3 cut(s) 16, 750, 790
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 2 cut(s) 77, 703
MwoI GCNNNNNNNGC 6 cut(s) 215, 272, 391, 497, 716, 1090
NciI CCSGG 2 cut(s) 16, 790
NcoI CCATGG 3 cut(s) 480, 504, 1074
NdeI CATATG 1 cut(s) 1000
NdeII GATC 4 cut(s) 138, 176, 182, 537
NlaIII CATG 7 cut(s) 413, 442, 484, 508, 686, 1029, 1078
NlaIV GGNNCC 2 cut(s) 178, 747
NmuCI GTSAC 4 cut(s) 18, 256, 396, 1106
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 2 cut(s) 442, 1029
NspV TTCGAA 1 cut(s) 554
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 318, 386
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 9 cut(s) 201, 204, 220, 265, 277, 549, 564, 712, 1134
PleI GAGTC 3 cut(s) 83, 427, 481
PmaCI CACGTG 1 cut(s) 1106
PmlI CACGTG 1 cut(s) 1106
PpsI GAGTC 3 cut(s) 83, 427, 481
Ppu21I YACGTR 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 1 cut(s) 1106
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 178, 747
PspPI GGNCC 2 cut(s) 12, 938
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 2 cut(s) 870, 997
RsaNI GTAC 2 cut(s) 869, 996
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 2 cut(s) 893, 1127
SatI GCNGC 9 cut(s) 200, 203, 219, 264, 276, 548, 563, 711, 1133
Sau3AI GATC 4 cut(s) 138, 176, 182, 537
Sau96I GGNCC 2 cut(s) 12, 938
SchI GAGTC 3 cut(s) 83, 428, 482
ScrFI CCNGG 3 cut(s) 16, 750, 790
SduI GDGCHC 1 cut(s) 830
SfaNI GCATC 4 cut(s) 509, 771, 1012, 1093
SfcI CTRYAG 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 2 cut(s) 365, 892
SmoI CTYRAG 2 cut(s) 365, 892
Sse9I AATT 6 cut(s) 50, 280, 652, 687, 875, 1124
SspI AATATT 1 cut(s) 1100
SspMI CTAG 1 cut(s) 872
StyD4I CCNGG 3 cut(s) 14, 748, 788
StyI CCWWGG 4 cut(s) 480, 504, 532, 1074
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 3 cut(s) 342, 958, 1108
TaqI TCGA 4 cut(s) 134, 240, 312, 554
TasI AATT 6 cut(s) 50, 280, 652, 687, 875, 1124
TatI WGTACW 2 cut(s) 868, 995
TauI GCSGC 4 cut(s) 202, 221, 266, 278
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 893, 1127
Tru9I TTAA 2 cut(s) 893, 1127
TscAI CASTG 2 cut(s) 549, 994
TseFI GTSAC 4 cut(s) 18, 256, 396, 1106
TseI GCWGC 5 cut(s) 202, 547, 562, 710, 1132
Tsp45I GTSAC 4 cut(s) 18, 256, 396, 1106
TspDTI ATGAA 4 cut(s) 653, 671, 751, 1017
TspGWI ACGGA 2 cut(s) 204, 931
TspRI CASTG 2 cut(s) 549, 994
Van91I CCANNNNNTGG 1 cut(s) 742
Vha464I CTTAAG 1 cut(s) 892
XapI RAATTY 1 cut(s) 687
XceI RCATGY 2 cut(s) 442, 1029
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 2 cut(s) 318, 386
XspI CTAG 1 cut(s) 872
ZraI GACGTC 1 cut(s) 340
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.