Rroxscaffold_5G00369800

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011374
Physical Location & Seq
Forward (+)
51584725 .. 51586550
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369800.1

Sequence Viewer

Length: 999 bp
ATGGAGAGACGAGGATCCCGATCCAACGGAATGTTGCCGCTGCTCGCACTCCACGCCGCCAGCGAGTATTACAGGCTCGACAGGAAGCCTCCCGTCACCGCCGCACTCATTGCCGCCAATTCTCTCGTCTACTTACGCCCCGCCTTCCTCGAACCCATTCTTCCTTCCATTCACGACGTCTGGTTCAACCCTCACCTCATCCTCAAGAATAAGGACTTGAAGCGGTTCTTGCTGTCACCGTTTTACCATGTGGGAGAGTCTCATTTGGTTTACAACATGCTCTCGCTTTTATGGAAGGGAATCAAGTTGGAGTCCTCCATGGATAGTGCTGAATTTGCATCCATGGTTGCTGTGCTACTCGGTATGTCCCAAGGAATCACACTGCTGCTTTCGAAAGCGCTGCTGGTTTTGTTTGACTACGAGAAGGCTTATTATTCGGAATACGCCGTTGGGTTTTCTGGGGTGATATTTGCAATGAAGGTGGTTCTCAATTCGCAGTCGGGAAACTATAGTTATGTTCATGGAATTCCGATGCCGTCGCGTTATGCTGCTTGGGCGGAGTTGGTTCTTATCCAGATGTTGGTGCCTGGTGTGTCTTTCATTGGTCATTTGGGTGGGATACTTGCCGGGTTTCTGTATCTCCGATTGAGGAGTGCATATTCGGGCGCAGACCCACTTACTTTAGTTCTCAGAGGTGTTAATAATGTGCTAGAATTGCCTATGCGGTTTTTAAGAAGAGTGTTTCCGTTCAGACGGAGGCAGGTATCTGGTAGAGGACCGGTTGGCAGGAGTCGTAGAGGAATAGCTATGGCGGATTGGAGGTGCAGTGCTTGTACATATGAAAACTCTGGTTGGTTGGGTGCATGCGAAATGTGTGGCACAAATAGGAATGACAATGGCAATGGCAATCCCATGGCGTCGCATCCTTTGCCACAATATTCACGTGACCTTACTTTGGAAGAATTAAGGCGGCTAAGGTTGGAAAGATTTGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

332

Amino Acids

37.31

Weight (kDa)

9.78

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 72 - 216 1.5e-21 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 541
AclWI GGATC 3 cut(s) 9, 15, 22
AcsI RAATTY 2 cut(s) 332, 525
AcvI CACGTG 1 cut(s) 944
AcyI GRCGYC 2 cut(s) 177, 917
AfaI GTAC 1 cut(s) 835
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 580, 955
AgeI ACCGGT 1 cut(s) 778
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 1 cut(s) 806
AluI AGCT 1 cut(s) 806
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 3 cut(s) 9, 15, 22
Aor51HI AGCGCT 1 cut(s) 399
ApeKI GCWGC 4 cut(s) 40, 385, 400, 548
ApoI RAATTY 2 cut(s) 332, 525
AsiGI ACCGGT 1 cut(s) 778
Asp700I GAANNNNTTC 2 cut(s) 156, 224
AspLEI GCGC 2 cut(s) 400, 668
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 4 cut(s) 88, 185, 228, 475
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 776
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 583
BbrPI CACGTG 1 cut(s) 944
BbvI GCAGC 4 cut(s) 27, 372, 387, 535
BceAI ACGGC 2 cut(s) 431, 520
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 751
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
BlsI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
Bme1390I CCNGG 2 cut(s) 588, 628
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 16, 585
BmrFI CCNGG 2 cut(s) 588, 628
BmsI GCATC 3 cut(s) 347, 522, 931
Bpu10I CCTNAGC 1 cut(s) 974
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 177, 917
BsaJI CCNNGG 4 cut(s) 318, 342, 370, 912
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 955
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 3 cut(s) 108, 480, 907
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 318, 342, 370, 912
BseGI GGATG 3 cut(s) 198, 338, 922
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 580, 955
BseMI GCAATG 3 cut(s) 108, 480, 907
BseMII CTCAG 1 cut(s) 703
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 4 cut(s) 27, 372, 387, 535
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 583
BshTI ACCGGT 1 cut(s) 778
BsiSI CCGG 2 cut(s) 627, 779
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 580, 955
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 2 cut(s) 14, 20
Bsp19I CCATGG 3 cut(s) 318, 342, 912
BspCNI CTCAG 1 cut(s) 702
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 16, 585
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 3 cut(s) 9, 15, 22
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 583
BsrDI GCAATG 3 cut(s) 108, 480, 907
BsrFI RCCGGY 1 cut(s) 778
BsrGI TGTACA 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 318, 342, 370, 912
BssMI GATC 2 cut(s) 14, 20
BssNI GRCGYC 2 cut(s) 177, 917
BssT1I CCWWGG 4 cut(s) 318, 342, 370, 912
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 730
BstACI GRCGYC 2 cut(s) 177, 917
BstAPI GCANNNNNTGC 2 cut(s) 110, 928
BstAUI TGTACA 1 cut(s) 833
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 45, 61, 865
BstDEI CTNAG 2 cut(s) 689, 974
BstDSI CCRYGG 3 cut(s) 318, 342, 912
BstF5I GGATG 3 cut(s) 198, 338, 922
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 2 cut(s) 400, 668
BstKTI GATC 2 cut(s) 17, 23
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 14, 20
BstMWI GCNNNNNNNGC 7 cut(s) 53, 110, 229, 335, 554, 715, 928
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 280, 867
BstSCI CCNGG 2 cut(s) 586, 626
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 27, 372, 387, 535
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 612
BtgI CCRYGG 3 cut(s) 318, 342, 912
BtsCI GGATG 3 cut(s) 198, 338, 922
BtsI GCAGTG 2 cut(s) 380, 832
BtsIMutI CAGTG 2 cut(s) 380, 832
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 45, 61, 865
CfoI GCGC 2 cut(s) 400, 668
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 906
Csp6I GTAC 1 cut(s) 834
CspAI ACCGGT 1 cut(s) 778
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 7 cut(s) 248, 277, 319, 343, 521, 864, 913
CviJI RGCY 5 cut(s) 76, 88, 428, 806, 973
CviKI_1 RGCY 5 cut(s) 76, 88, 428, 806, 973
CviQI GTAC 1 cut(s) 834
DdeI CTNAG 2 cut(s) 689, 974
DpnI GATC 2 cut(s) 16, 22
DpnII GATC 2 cut(s) 14, 20
Eam1104I CTCTTC 1 cut(s) 730
EarI CTCTTC 1 cut(s) 730
EciI GGCGGA 2 cut(s) 572, 827
Eco130I CCWWGG 4 cut(s) 318, 342, 370, 912
Eco47I GGWCC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 399
Eco72I CACGTG 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 4 cut(s) 318, 342, 370, 912
ErhI CCWWGG 4 cut(s) 318, 342, 370, 912
FaeI CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 352
FatI CATG 7 cut(s) 247, 276, 318, 342, 520, 863, 912
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FokI GGATG 3 cut(s) 185, 325, 909
Fsp4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 399, 667
GluI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 2 cut(s) 627, 779
HgaI GACGC 1 cut(s) 906
HhaI GCGC 2 cut(s) 400, 668
Hin1I GRCGYC 2 cut(s) 177, 917
Hin1II CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
Hin6I GCGC 2 cut(s) 398, 666
HinP1I GCGC 2 cut(s) 398, 666
HinfI GANTC 5 cut(s) 257, 300, 311, 375, 790
HpaII CCGG 2 cut(s) 627, 779
HphI GGTGA 4 cut(s) 88, 185, 228, 475
Hpy166II GTNNAC 2 cut(s) 130, 271
Hpy188I TCNGA 5 cut(s) 439, 531, 644, 692, 752
Hpy188III TCNNGA 5 cut(s) 18, 173, 205, 501, 574
Hpy8I GTNNAC 2 cut(s) 130, 271
Hpy99I CGWCG 3 cut(s) 179, 541, 922
HpyAV CCTTC 5 cut(s) 154, 174, 289, 418, 472
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 2 cut(s) 177, 943
HpyCH4V TGCA 5 cut(s) 338, 473, 656, 825, 863
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 110, 229, 335, 554, 715, 928
HpyF3I CTNAG 2 cut(s) 689, 974
HpySE526I ACGT 2 cut(s) 177, 943
Hsp92I GRCGYC 2 cut(s) 177, 917
Hsp92II CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
HspAI GCGC 2 cut(s) 398, 666
Kzo9I GATC 2 cut(s) 14, 20
Lsp1109I GCAGC 4 cut(s) 27, 372, 387, 535
LweI GCATC 3 cut(s) 347, 522, 931
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 177, 943
MaeIII GTNAC 3 cut(s) 94, 234, 944
MalI GATC 2 cut(s) 16, 22
MboI GATC 2 cut(s) 14, 20
MboII GAAGA 3 cut(s) 152, 747, 971
MflI RGATCY 1 cut(s) 14
MluCI AATT 6 cut(s) 118, 332, 490, 525, 713, 962
MlyI GAGTC 3 cut(s) 266, 320, 799
MmeI TCCRAC 3 cut(s) 48, 288, 960
MroXI GAANNNNTTC 2 cut(s) 156, 224
MseI TTAA 3 cut(s) 699, 731, 965
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 627, 779
MspR9I CCNGG 2 cut(s) 588, 628
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 7 cut(s) 53, 110, 229, 335, 554, 715, 928
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 3 cut(s) 318, 342, 912
NdeI CATATG 1 cut(s) 838
NdeII GATC 2 cut(s) 14, 20
NlaIII CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
NlaIV GGNNCC 2 cut(s) 16, 585
NmuCI GTSAC 3 cut(s) 94, 234, 944
NspI RCATGY 2 cut(s) 280, 867
NspV TTCGAA 1 cut(s) 392
PaeI GCATGC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 2 cut(s) 16, 60
PdmI GAANNNNTTC 2 cut(s) 156, 224
PfeI GAWTC 2 cut(s) 300, 375
PflMI CCANNNNNTGG 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 778
PkrI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
PleI GAGTC 3 cut(s) 265, 319, 798
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
PpsI GAGTC 3 cut(s) 265, 319, 798
Ppu21I YACGTR 1 cut(s) 944
Psp6I CCWGG 1 cut(s) 586
PspCI CACGTG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 16, 585
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 835
RsaNI GTAC 1 cut(s) 834
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 3 cut(s) 699, 731, 965
SatI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
Sau3AI GATC 2 cut(s) 14, 20
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 3 cut(s) 266, 320, 799
ScrFI CCNGG 2 cut(s) 588, 628
SfaNI GCATC 3 cut(s) 347, 522, 931
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 867
Sse9I AATT 6 cut(s) 118, 332, 490, 525, 713, 962
SspI AATATT 1 cut(s) 938
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 586, 626
StyI CCWWGG 4 cut(s) 318, 342, 370, 912
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 2 cut(s) 180, 946
TaqI TCGA 3 cut(s) 78, 150, 392
TasI AATT 6 cut(s) 118, 332, 490, 525, 713, 962
TatI WGTACW 1 cut(s) 833
TauI GCSGC 5 cut(s) 40, 59, 104, 116, 973
TfiI GAWTC 2 cut(s) 300, 375
Tru1I TTAA 3 cut(s) 699, 731, 965
Tru9I TTAA 3 cut(s) 699, 731, 965
TscAI CASTG 2 cut(s) 387, 832
TseFI GTSAC 3 cut(s) 94, 234, 944
TseI GCWGC 4 cut(s) 40, 385, 400, 548
Tsp45I GTSAC 3 cut(s) 94, 234, 944
TspDTI ATGAA 4 cut(s) 491, 509, 589, 855
TspGWI ACGGA 3 cut(s) 42, 735, 769
TspRI CASTG 2 cut(s) 387, 832
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 2 cut(s) 332, 525
XceI RCATGY 2 cut(s) 280, 867
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 156, 224
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.