Rmu_sc0004940.1_g000018

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004940.1
OG0011374
Physical Location & Seq
Reverse (-)
88345 .. 89480
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004940.1_g000018.1.cds

Sequence Viewer

Length: 999 bp
atggagagaagaggatcccgatccaacggaatgttgccgctgctcgcactccacgccgccagcgagtattacaggctcgacaggaagcctcccgtcaccgccgccctcattgccgccaattctctcgtctacttacgccccgccttcctcgaacccattctcccttccattcacgacgtctggttcaaccctcacctcatcctcaagaataaggacttgaagcggttcttgctgtcaccgttttaccatgtgggagagtctcatctggtttacaacatgctctcgcttttatggaagggaatcaagttggagtcctccatggatagtgctgagtttgcatccatggttgctgtgctactcggtatgtcccaagggatcacactgctgctttcgaaagcgctgctcgttttgtttgactatgagaaggcttattattccgaatacgctgttgggttttctggggtgatatttgcaatgaaggtggttctcaattcgcagtccggaaactatagttatgttcatggaattccaatgccgtcgcgttatgctgcttgggcggagttggttcttatccagatgttggtgcctggtgtgtctttcattggtcatttgggtgggatgcttgccgggtttctgtatctccgattgaggagtgcatattcgggctcagacccgcttactttagctctcagaggtgttactaatgtactagaattgcctatgcggttcttaagaagagtgtttccattcagacggaggcaggtatctggtagagggccggttggtgggagacgtagaggaatagctatggcggattggaggtgcagtgcttgtacatatgaaaactctggttggttggatgcatgtgaaatgtgtggcacaaataggaatgacaatggcaatgccaatcccatggcgtcgcatcctttgccacaatattcacgtgaccttactttggaagaattaaggcagctaaggttggaaagatttggtagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

332

Amino Acids

37.32

Weight (kDa)

9.64

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 500
AclWI GGATC 4 cut(s) 9, 15, 22, 383
AcsI RAATTY 1 cut(s) 525
AcvI CACGTG 1 cut(s) 944
AcyI GRCGYC 2 cut(s) 177, 917
AfaI GTAC 2 cut(s) 708, 835
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 580, 785, 955
AflII CTTAAG 1 cut(s) 730
AgsI TTSAA 2 cut(s) 187, 220
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 3 cut(s) 686, 806, 973
AluI AGCT 3 cut(s) 686, 806, 973
Alw26I GTCTC 2 cut(s) 264, 784
AlwI GGATC 4 cut(s) 9, 15, 22, 383
Aor13HI TCCGGA 1 cut(s) 500
Aor51HI AGCGCT 1 cut(s) 399
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 5 cut(s) 40, 385, 400, 548, 970
ApoI RAATTY 1 cut(s) 525
Asp700I GAANNNNTTC 2 cut(s) 156, 224
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 4 cut(s) 88, 185, 228, 475
AsuII TTCGAA 1 cut(s) 392
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 668
BbrPI CACGTG 1 cut(s) 944
BbvI GCAGC 5 cut(s) 27, 372, 387, 535, 982
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 264, 784
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 401
BfrI CTTAAG 1 cut(s) 730
BfuAI ACCTGC 1 cut(s) 751
BisI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
BlsI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
Bme1390I CCNGG 2 cut(s) 588, 628
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 16, 585
BmrFI CCNGG 2 cut(s) 588, 628
BmsI GCATC 4 cut(s) 347, 609, 850, 931
Bpu10I CCTNAGC 1 cut(s) 974
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 177, 917
BsaJI CCNNGG 4 cut(s) 318, 342, 370, 912
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 811, 841
Bsc4I CCNNNNNNNGG 3 cut(s) 580, 785, 955
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 3 cut(s) 108, 480, 907
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 318, 342, 370, 912
BseGI GGATG 5 cut(s) 198, 338, 624, 865, 922
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 580, 785, 955
BseMI GCAATG 3 cut(s) 108, 480, 907
BseMII CTCAG 3 cut(s) 321, 681, 703
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 5 cut(s) 27, 372, 387, 535, 982
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 1 cut(s) 778
BshNI GGYRCC 1 cut(s) 583
BsiSI CCGG 3 cut(s) 501, 627, 779
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 580, 785, 955
BsmAI GTCTC 2 cut(s) 264, 784
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 1 cut(s) 778
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 3 cut(s) 14, 20, 375
Bsp19I CCATGG 3 cut(s) 318, 342, 912
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 3 cut(s) 322, 680, 702
BspEI TCCGGA 1 cut(s) 500
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 16, 585
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 4 cut(s) 9, 15, 22, 383
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 730
BsrDI GCAATG 3 cut(s) 108, 480, 907
BsrFI RCCGGY 1 cut(s) 778
BsrGI TGTACA 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 318, 342, 370, 912
BssMI GATC 3 cut(s) 14, 20, 375
BssNI GRCGYC 2 cut(s) 177, 917
BssT1I CCWWGG 4 cut(s) 318, 342, 370, 912
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 4, 730
BstACI GRCGYC 2 cut(s) 177, 917
BstAFI CTTAAG 1 cut(s) 730
BstAPI GCANNNNNTGC 1 cut(s) 928
BstAUI TGTACA 1 cut(s) 833
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 45, 61, 624
BstDEI CTNAG 4 cut(s) 330, 667, 689, 974
BstDSI CCRYGG 3 cut(s) 318, 342, 912
BstF5I GGATG 5 cut(s) 198, 338, 624, 865, 922
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 3 cut(s) 17, 23, 378
BstMAI GTCTC 2 cut(s) 264, 784
BstMBI GATC 3 cut(s) 14, 20, 375
BstMWI GCNNNNNNNGC 6 cut(s) 53, 110, 229, 335, 554, 928
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 2 cut(s) 280, 867
BstSCI CCNGG 2 cut(s) 586, 626
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 5 cut(s) 27, 372, 387, 535, 982
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 913
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 778
BtgI CCRYGG 3 cut(s) 318, 342, 912
BtsCI GGATG 5 cut(s) 198, 338, 624, 865, 922
BtsI GCAGTG 2 cut(s) 380, 832
BtsIMutI CAGTG 2 cut(s) 380, 832
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 45, 61, 624
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 906
Csp6I GTAC 2 cut(s) 707, 834
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 7 cut(s) 248, 277, 319, 343, 521, 864, 913
CviJI RGCY 8 cut(s) 76, 88, 428, 666, 686, 778, 806, 973
CviKI_1 RGCY 8 cut(s) 76, 88, 428, 666, 686, 778, 806, 973
CviQI GTAC 2 cut(s) 707, 834
DdeI CTNAG 4 cut(s) 330, 667, 689, 974
DpnI GATC 3 cut(s) 16, 22, 377
DpnII GATC 3 cut(s) 14, 20, 375
Eam1104I CTCTTC 2 cut(s) 4, 730
EarI CTCTTC 2 cut(s) 4, 730
EciI GGCGGA 2 cut(s) 572, 827
Eco130I CCWWGG 4 cut(s) 318, 342, 370, 912
Eco24I GRGCYC 1 cut(s) 668
Eco47III AGCGCT 1 cut(s) 399
Eco72I CACGTG 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 4 cut(s) 318, 342, 370, 912
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 4 cut(s) 318, 342, 370, 912
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 352
FatI CATG 7 cut(s) 247, 276, 318, 342, 520, 863, 912
FauI CCCGC 2 cut(s) 148, 681
FauNDI CATATG 1 cut(s) 838
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FokI GGATG 5 cut(s) 185, 325, 631, 872, 909
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 399
GluI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 1 cut(s) 778
HapII CCGG 3 cut(s) 501, 627, 779
HgaI GACGC 1 cut(s) 906
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 2 cut(s) 177, 917
Hin1II CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 3 cut(s) 257, 300, 311
HpaII CCGG 3 cut(s) 501, 627, 779
HphI GGTGA 4 cut(s) 88, 185, 228, 475
Hpy166II GTNNAC 2 cut(s) 130, 271
Hpy188I TCNGA 5 cut(s) 439, 644, 670, 692, 752
Hpy188III TCNNGA 5 cut(s) 18, 173, 205, 501, 574
Hpy8I GTNNAC 2 cut(s) 130, 271
Hpy99I CGWCG 3 cut(s) 179, 541, 922
HpyAV CCTTC 5 cut(s) 154, 174, 289, 418, 472
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 3 cut(s) 177, 793, 943
HpyCH4V TGCA 5 cut(s) 338, 473, 656, 825, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 110, 229, 335, 554, 928
HpyF3I CTNAG 4 cut(s) 330, 667, 689, 974
HpySE526I ACGT 3 cut(s) 177, 793, 943
Hsp92I GRCGYC 2 cut(s) 177, 917
Hsp92II CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
HspAI GCGC 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 500
Kzo9I GATC 3 cut(s) 14, 20, 375
Lsp1109I GCAGC 5 cut(s) 27, 372, 387, 535, 982
LweI GCATC 4 cut(s) 347, 609, 850, 931
MaeI CTAG 1 cut(s) 710
MaeII ACGT 3 cut(s) 177, 793, 943
MaeIII GTNAC 4 cut(s) 94, 234, 697, 944
MalI GATC 3 cut(s) 16, 22, 377
MboI GATC 3 cut(s) 14, 20, 375
MboII GAAGA 3 cut(s) 21, 747, 971
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 5 cut(s) 118, 490, 525, 713, 962
MlyI GAGTC 2 cut(s) 266, 320
MmeI TCCRAC 4 cut(s) 48, 288, 837, 960
Mph1103I ATGCAT 1 cut(s) 865
MroI TCCGGA 1 cut(s) 500
MroXI GAANNNNTTC 2 cut(s) 156, 224
MseI TTAA 2 cut(s) 731, 965
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 730
MspI CCGG 3 cut(s) 501, 627, 779
MspR9I CCNGG 2 cut(s) 588, 628
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 6 cut(s) 53, 110, 229, 335, 554, 928
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 3 cut(s) 318, 342, 912
NdeI CATATG 1 cut(s) 838
NdeII GATC 3 cut(s) 14, 20, 375
NlaIII CATG 7 cut(s) 251, 280, 322, 346, 524, 867, 916
NlaIV GGNNCC 2 cut(s) 16, 585
NmuCI GTSAC 3 cut(s) 94, 234, 944
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 280, 867
NspV TTCGAA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 156, 224
PfeI GAWTC 1 cut(s) 300
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 9 cut(s) 39, 42, 58, 103, 115, 387, 402, 550, 972
PleI GAGTC 2 cut(s) 265, 319
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
PpsI GAGTC 2 cut(s) 265, 319
Ppu21I YACGTR 1 cut(s) 944
Psp6I CCWGG 1 cut(s) 586
PspCI CACGTG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 16, 585
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 708, 835
RsaNI GTAC 2 cut(s) 707, 834
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 731, 965
SatI GCNGC 9 cut(s) 38, 41, 57, 102, 114, 386, 401, 549, 971
Sau3AI GATC 3 cut(s) 14, 20, 375
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 2 cut(s) 266, 320
ScrFI CCNGG 2 cut(s) 588, 628
SduI GDGCHC 1 cut(s) 668
SfaNI GCATC 4 cut(s) 347, 609, 850, 931
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 203, 730
SmoI CTYRAG 2 cut(s) 203, 730
Sse9I AATT 5 cut(s) 118, 490, 525, 713, 962
SspI AATATT 1 cut(s) 938
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 586, 626
StyI CCWWGG 4 cut(s) 318, 342, 370, 912
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 3 cut(s) 180, 796, 946
TaqI TCGA 3 cut(s) 78, 150, 392
TasI AATT 5 cut(s) 118, 490, 525, 713, 962
TatI WGTACW 2 cut(s) 706, 833
TauI GCSGC 4 cut(s) 40, 59, 104, 116
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 2 cut(s) 731, 965
Tru9I TTAA 2 cut(s) 731, 965
TscAI CASTG 2 cut(s) 387, 832
TseFI GTSAC 3 cut(s) 94, 234, 944
TseI GCWGC 5 cut(s) 40, 385, 400, 548, 970
Tsp45I GTSAC 3 cut(s) 94, 234, 944
TspDTI ATGAA 4 cut(s) 491, 509, 589, 855
TspGWI ACGGA 2 cut(s) 42, 769
TspRI CASTG 2 cut(s) 387, 832
Van91I CCANNNNNTGG 1 cut(s) 580
Vha464I CTTAAG 1 cut(s) 730
XapI RAATTY 1 cut(s) 525
XceI RCATGY 2 cut(s) 280, 867
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 156, 224
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.