MD13G1136300.v1.1

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011374
Physical Location & Seq
Reverse (-)
10479176 .. 10480394
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1136300.v1.1.491

Sequence Viewer

Length: 588 bp
ATGTTCTTCGACTATGACTGGTCTTTCTACTCTGAATACTCTGTCGGGTTTTCTGGGGTTCTCTTTGCCATGAAGGTCGTGCTCAATTCACAGACTGAGAACAGTTATGTGTATGGAATTCCAATACCGTCCCATTATGCTGTGTGGGCAGAATTGGCTTTTGCCCAAATGCTGGTACCTGGTGTCTCTTTTGTTGGCCATTTGAGTGGAATACTTGCCGGTCTTGTGTATGTCTGGCTGAGGGGTTCGTATAATGGTTCAGACCCACTTACTGCTATCTTCAGAGGTGTTTTTGGTGTGCTGAAATGGCCTCTGAGGTTTTTACAGCGCTGGTTTCCGCGGAGGCAAGTATCCGGTAGAGGACCTGTTGGTTGGAGTCAAAGAGGAATGTCTGTATCTGGTTTCTGGAGGTGCCATGCTTGTACGTATGAGAATTCTGCTTGGCTAGATGTATGTGAAATGTGTTCGACAAATAGGAGAGGGGATGGCTATGGCAGTGGCATGGGTTCACCTCGGTCACCACATTATTCTGGTCACCTTACTTTGGAAGAGTTAAGACGGCGGAGGTTGGAAAGATTTAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

196

Amino Acids

22.24

Weight (kDa)

9.47

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 11 - 81 3.9e-10 Rhomboid domain
Zn_ribbon_RanBP PF00641 133 - 159 4.5e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 175
AccB1I GGYRCC 2 cut(s) 175, 411
AccB7I CCANNNNNTGG 1 cut(s) 172
AccII CGCG 1 cut(s) 340
AciI CCGC 3 cut(s) 338, 340, 562
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 117, 433
AcuI CTGAAG 1 cut(s) 265
AfaI GTAC 2 cut(s) 177, 424
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 172, 544
AjnI CCWGG 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 190
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 196, 308
ApoI RAATTY 2 cut(s) 117, 433
Asp718I GGTACC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 3 cut(s) 501, 510, 527
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 198
BanI GGYRCC 2 cut(s) 175, 411
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 446
BfoI RGCGCY 1 cut(s) 331
BfuI GTATCC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 177, 413
BmrFI CCNGG 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 338, 512
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 544
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 338, 512
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 172, 544
BseMII CTCAG 3 cut(s) 87, 230, 305
BseNI ACTGG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 198, 310
BshNI GGYRCC 2 cut(s) 175, 411
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 219, 354
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 172, 544
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 2 cut(s) 198, 310
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 3 cut(s) 338, 340, 562
BspANI GGCC 2 cut(s) 198, 310
BspCNI CTCAG 3 cut(s) 88, 231, 306
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 177, 413
BspT107I GGYRCC 2 cut(s) 175, 411
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 338, 512
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 104, 129
Bst6I CTCTTC 1 cut(s) 543
BstBAI YACGTR 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 96, 239, 314
BstDSI CCRYGG 1 cut(s) 338
BstEII GGTNACC 2 cut(s) 516, 533
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 307
BstNI CCWGG 1 cut(s) 180
BstPI GGTNACC 2 cut(s) 516, 533
BstSCI CCNGG 1 cut(s) 178
BstSNI TACGTA 1 cut(s) 426
BstUI CGCG 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 206
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 198, 310
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 362
Cfr42I CCGCGG 1 cut(s) 341
CsiI ACCWGGT 1 cut(s) 178
Csp6I GTAC 2 cut(s) 176, 423
CviAII CATG 3 cut(s) 70, 416, 502
CviJI RGCY 6 cut(s) 158, 198, 238, 310, 445, 489
CviKI_1 RGCY 6 cut(s) 158, 198, 238, 310, 445, 489
CviQI GTAC 2 cut(s) 176, 423
DdeI CTNAG 3 cut(s) 96, 239, 314
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 577
Eco105I TACGTA 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 265
Eco91I GGTNACC 2 cut(s) 516, 533
EcoO109I RGGNCCY 1 cut(s) 362
EcoO65I GGTNACC 2 cut(s) 516, 533
EcoRI GAATTC 2 cut(s) 117, 433
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 73, 419, 505
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 69, 415, 501
FokI GGATG 1 cut(s) 497
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 2 cut(s) 198, 310
HapII CCGG 2 cut(s) 219, 354
HhaI GCGC 1 cut(s) 330
Hin1II CATG 3 cut(s) 73, 419, 505
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 1 cut(s) 376
HpaII CCGG 2 cut(s) 219, 354
HphI GGTGA 3 cut(s) 501, 510, 527
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 34, 262, 284, 315
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 104, 129
HpyCH4IV ACGT 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 307
HpyF3I CTNAG 3 cut(s) 96, 239, 314
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 3 cut(s) 73, 419, 505
HspAI GCGC 1 cut(s) 328
KpnI GGTACC 1 cut(s) 179
KspI CCGCGG 1 cut(s) 341
MabI ACCWGGT 1 cut(s) 178
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 516, 533
MboII GAAGA 2 cut(s) 271, 560
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 4 cut(s) 85, 117, 152, 433
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 2 cut(s) 353, 549
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 2 cut(s) 219, 354
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 307
NlaIII CATG 3 cut(s) 73, 419, 505
NlaIV GGNNCC 2 cut(s) 177, 413
NmuCI GTSAC 2 cut(s) 516, 533
PflMI CCANNNNNTGG 1 cut(s) 172
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 426
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 178
PspEI GGTNACC 2 cut(s) 516, 533
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 177, 413
PspPI GGNCC 1 cut(s) 362
PspPPI RGGWCCY 1 cut(s) 362
RsaI GTAC 2 cut(s) 177, 424
RsaNI GTAC 2 cut(s) 176, 423
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 341
SaqAI TTAA 1 cut(s) 554
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 84
SexAI ACCWGGT 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 341
SgrBI CCGCGG 1 cut(s) 341
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 426
Sse9I AATT 4 cut(s) 85, 117, 152, 433
SsiI CCGC 3 cut(s) 338, 340, 562
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 104, 129
TaiI ACGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 9, 467
TaqII GACCGA 1 cut(s) 504
TasI AATT 4 cut(s) 85, 117, 152, 433
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 2 cut(s) 516, 533
Tsp45I GTSAC 2 cut(s) 516, 533
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 2 cut(s) 117, 433
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.