AT3G17910

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009259
Physical Location & Seq
Forward (+)
6133384 .. 6136405
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17910.1

Sequence Viewer

Length: 1065 bp
ATGGCGACCTCGCTTTCCAAAATCCTAACGAGATCGAACACTAAGAGATACTGGTGCTCTACTACAACAAGTATCTCTGCCTCTCCTTCTTTACCGAAACAATTCTGGTCAAGACACTTCTCTGCCGTCGCTGACTCTTCCTCCTCTAGCTCCGCCGCTCTTGGAAGCCAATCGAGTTCTTCTGCTCCACCTCAAGAGAACAAACGAGGGTCTAAGTGGTCACAATTGTTGTTGTTCTTGCCTGGAGCGATTACCTTTGGTCTCGGGTCATGGCAGATCGTCAGGAGAGAGGAAAAGTTCAAAACACTGGAGTATCAACAGCAACGGTTGAACATGGAACCAATAAAGCTAAATATAGACCATCCTCTTGATAAGAATCTCAATGCTTTAGAATTTAGACGGGTTAGTTGCAAGGGTGTCTTTGACGAGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATCGGGAATTACTGAAAATGGATTCTTTGTCATCACACCTCTAATGCCAATCCCCGGTGACCTGGATAGCATGCAATCGCCTATTCTGGTGAATCGTGGATGGGTTCCTCGAAGTTGGAGAGAGAAGTCACAAGAATCCGCAGAGGCTGAGTTCATTGCAAACCAGTCAACAAAAGCTAAATCACCGTCCAATGAACCAAAGTCCTGGTGGAAATTTTGGTCTAAGACGCCAGTGATTACCAAGGAACATATATCTGCGGTTAAGCCTGTAGAAGTAGTTGGCGTAATCAGGGGAGGGGAGAACCCGAGCATATTTGTTCCATCCAATGATCCAAGTACCGGGCAGTGGTTCTATGTAGATGTTCCTGCGATGGCTCGAGCCGTTGGCCTTCCTGAAAACACAATCTACGTAGAGGACGTCCATGAACATGTAGATCGGAGTAGACCGTATCCTGTTCCGAAGGACATCAACACCTTGATCCGTAGTAAAGTCATGCCACAGGACCATCTGAACTACTCAATAACATGGTATTCTCTCTCGGCGGCTGTCACTTTCATGGCATACAAGAGACTGAAGGCAAAGCCTGTCCGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

354

Amino Acids

39.92

Weight (kDa)

9.79

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 80 - 337 3.8e-43 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 910
AciI CCGC 6 cut(s) 153, 156, 606, 725, 1010, 1057
AclWI GGATC 2 cut(s) 791, 940
AcsI RAATTY 2 cut(s) 392, 680
AcuI CTGAAG 1 cut(s) 1061
AcyI GRCGYC 2 cut(s) 695, 885
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 3 cut(s) 521, 806, 813
AflIII ACRYGT 1 cut(s) 895
AgsI TTSAA 2 cut(s) 301, 331
AjnI CCWGG 3 cut(s) 241, 528, 671
AluBI AGCT 3 cut(s) 150, 349, 644
AluI AGCT 3 cut(s) 150, 349, 644
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 266, 1030
AlwI GGATC 2 cut(s) 791, 940
AlwNI CAGNNNCTG 1 cut(s) 614
Ama87I CYCGRG 3 cut(s) 263, 772, 843
AoxI GGCC 1 cut(s) 853
ApoI RAATTY 2 cut(s) 392, 680
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 3 cut(s) 449, 462, 970
AsuC2I CCSGG 2 cut(s) 522, 808
AsuHPI GGTGA 3 cut(s) 536, 568, 642
AvaI CYCGRG 3 cut(s) 263, 772, 843
AvaII GGWCC 3 cut(s) 449, 462, 970
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 5 cut(s) 369, 561, 796, 832, 981
BceAI ACGGC 2 cut(s) 110, 833
BciT130I CCWGG 3 cut(s) 243, 530, 673
BciVI GTATCC 1 cut(s) 927
BcnI CCSGG 2 cut(s) 522, 808
BcoDI GTCTC 2 cut(s) 266, 1030
BfaI CTAG 2 cut(s) 147, 459
BfmI CTRYAG 1 cut(s) 735
BfuI GTATCC 1 cut(s) 927
BisI GCNGC 2 cut(s) 156, 1011
BlsI GCNGC 2 cut(s) 157, 1012
Bme1390I CCNGG 5 cut(s) 243, 522, 530, 673, 808
Bme18I GGWCC 3 cut(s) 449, 462, 970
BmeT110I CYCGRG 3 cut(s) 263, 772, 843
BmgT120I GGNCC 3 cut(s) 449, 462, 970
BmiI GGNNCC 3 cut(s) 339, 450, 573
BmrFI CCNGG 5 cut(s) 243, 522, 530, 673, 808
BpmI CTGGAG 2 cut(s) 264, 329
BpuEI CTTGAG 1 cut(s) 177
BpuMI CCSGG 2 cut(s) 522, 808
BsaAI YACGTR 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 2 cut(s) 695, 885
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 452, 520, 708
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 806, 813
Bse1I ACTGG 4 cut(s) 56, 312, 631, 698
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 3 cut(s) 243, 530, 673
BseDI CCNNGG 3 cut(s) 452, 520, 708
BseGI GGATG 3 cut(s) 361, 572, 788
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 521, 806, 813
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 4 cut(s) 56, 312, 631, 698
BseRI GAGGAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 3 cut(s) 263, 772, 843
BsiSI CCGG 2 cut(s) 522, 807
BslI CCNNNNNNNGG 3 cut(s) 521, 806, 813
BsmAI GTCTC 2 cut(s) 266, 1030
BsnI GGCC 1 cut(s) 855
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 3 cut(s) 263, 772, 843
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 5 cut(s) 32, 276, 796, 901, 945
BspACI CCGC 6 cut(s) 153, 156, 606, 725, 1010, 1057
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 1 cut(s) 607
BspLI GGNNCC 3 cut(s) 339, 450, 573
BspPI GGATC 2 cut(s) 791, 940
BspTNI GGTCTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 4 cut(s) 56, 312, 631, 698
BssECI CCNNGG 3 cut(s) 452, 520, 708
BssMI GATC 5 cut(s) 32, 276, 796, 901, 945
BssNI GRCGYC 2 cut(s) 695, 885
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 3 cut(s) 243, 530, 673
Bst4CI ACNGT 4 cut(s) 327, 456, 654, 915
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 2 cut(s) 695, 885
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 4 cut(s) 42, 213, 615, 690
BstDSI CCRYGG 1 cut(s) 452
BstEII GGTNACC 1 cut(s) 524
BstF5I GGATG 3 cut(s) 361, 572, 788
BstKTI GATC 5 cut(s) 35, 279, 799, 904, 948
BstMAI GTCTC 2 cut(s) 266, 1030
BstMBI GATC 5 cut(s) 32, 276, 796, 901, 945
BstNI CCWGG 3 cut(s) 243, 530, 673
BstNSI RCATGY 2 cut(s) 541, 899
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 5 cut(s) 241, 520, 528, 671, 806
BstSFI CTRYAG 1 cut(s) 735
BstSNI TACGTA 1 cut(s) 877
BstXI CCANNNNNNTGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 927
BsuRI GGCC 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 452
BtgZI GCGATG 1 cut(s) 851
BtsCI GGATG 3 cut(s) 361, 572, 788
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 3 cut(s) 305, 705, 818
Cac8I GCNNGC 1 cut(s) 539
CaiI CAGNNNCTG 1 cut(s) 614
Cfr13I GGNCC 3 cut(s) 449, 462, 970
CseI GACGC 1 cut(s) 703
Csp6I GTAC 1 cut(s) 804
CviAII CATG 8 cut(s) 270, 334, 538, 890, 896, 961, 993, 1024
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 4 cut(s) 42, 213, 615, 690
DpnI GATC 5 cut(s) 34, 278, 798, 903, 947
DpnII GATC 5 cut(s) 32, 276, 796, 901, 945
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 142
Eco105I TACGTA 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 3 cut(s) 449, 462, 970
Eco57I CTGAAG 1 cut(s) 1061
Eco88I CYCGRG 3 cut(s) 263, 772, 843
Eco91I GGTNACC 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 524
EcoRII CCWGG 3 cut(s) 241, 528, 671
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 8 cut(s) 273, 337, 541, 893, 899, 964, 996, 1027
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 8 cut(s) 269, 333, 537, 889, 895, 960, 992, 1023
FblI GTMKAC 1 cut(s) 910
Fnu4HI GCNGC 2 cut(s) 156, 1011
FokI GGATG 3 cut(s) 348, 579, 775
Fsp4HI GCNGC 2 cut(s) 156, 1011
FspBI CTAG 2 cut(s) 147, 459
GluI GCNGC 2 cut(s) 156, 1011
GsuI CTGGAG 2 cut(s) 264, 329
HaeIII GGCC 1 cut(s) 855
HapII CCGG 2 cut(s) 522, 807
HgaI GACGC 1 cut(s) 703
Hin1I GRCGYC 2 cut(s) 695, 885
Hin1II CATG 8 cut(s) 273, 337, 541, 893, 899, 964, 996, 1027
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 5 cut(s) 134, 376, 489, 559, 602
HpaII CCGG 2 cut(s) 522, 807
HphI GGTGA 3 cut(s) 536, 568, 642
Hpy166II GTNNAC 3 cut(s) 452, 636, 911
Hpy188I TCNGA 3 cut(s) 906, 927, 978
Hpy188III TCNNGA 6 cut(s) 111, 194, 283, 368, 471, 860
Hpy8I GTNNAC 3 cut(s) 452, 636, 911
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 96, 866, 922, 1036
HpyCH4III ACNGT 4 cut(s) 327, 456, 654, 915
HpyCH4IV ACGT 2 cut(s) 876, 885
HpyCH4V TGCA 3 cut(s) 411, 541, 626
HpyF3I CTNAG 4 cut(s) 42, 213, 615, 690
HpySE526I ACGT 2 cut(s) 876, 885
Hsp92I GRCGYC 2 cut(s) 695, 885
Hsp92II CATG 8 cut(s) 273, 337, 541, 893, 899, 964, 996, 1027
Kzo9I GATC 5 cut(s) 32, 276, 796, 901, 945
LmnI GCTCC 3 cut(s) 155, 190, 245
MaeI CTAG 2 cut(s) 147, 459
MaeII ACGT 2 cut(s) 876, 885
MaeIII GTNAC 4 cut(s) 219, 524, 594, 1015
MalI GATC 5 cut(s) 34, 278, 798, 903, 947
MbiI CCGCTC 1 cut(s) 158
MboI GATC 5 cut(s) 32, 276, 796, 901, 945
MboII GAAGA 2 cut(s) 129, 171
MfeI CAATTG 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 5 cut(s) 101, 224, 392, 474, 680
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 563
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 894, 1022
MspI CCGG 2 cut(s) 522, 807
MspR9I CCNGG 5 cut(s) 243, 522, 530, 673, 808
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 3 cut(s) 243, 530, 673
NciI CCSGG 2 cut(s) 522, 808
NdeII GATC 5 cut(s) 32, 276, 796, 901, 945
NlaIII CATG 8 cut(s) 273, 337, 541, 893, 899, 964, 996, 1027
NlaIV GGNNCC 3 cut(s) 339, 450, 573
NmeAIII GCCGAG 1 cut(s) 986
NmuCI GTSAC 4 cut(s) 219, 524, 594, 1015
NspI RCATGY 2 cut(s) 541, 899
PaeI GCATGC 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 843
PciI ACATGT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 4 cut(s) 376, 489, 559, 602
PkrI GCNGC 2 cut(s) 157, 1012
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 877
PscI ACATGT 1 cut(s) 895
Psp6I CCWGG 3 cut(s) 241, 528, 671
PspEI GGTNACC 1 cut(s) 524
PspGI CCWGG 3 cut(s) 241, 528, 671
PspN4I GGNNCC 3 cut(s) 339, 450, 573
PspPI GGNCC 3 cut(s) 449, 462, 970
PspXI VCTCGAGB 1 cut(s) 843
PstNI CAGNNNCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 894, 1022
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 156, 1011
Sau3AI GATC 5 cut(s) 32, 276, 796, 901, 945
Sau96I GGNCC 3 cut(s) 449, 462, 970
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 5 cut(s) 243, 522, 530, 673, 808
SduI GDGCHC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 843
SinI GGWCC 3 cut(s) 449, 462, 970
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 894, 1022
SmlI CTYRAG 2 cut(s) 192, 843
SmoI CTYRAG 2 cut(s) 192, 843
SnaBI TACGTA 1 cut(s) 877
SphI GCATGC 1 cut(s) 541
Sse9I AATT 5 cut(s) 101, 224, 392, 474, 680
SsiI CCGC 6 cut(s) 153, 156, 606, 725, 1010, 1057
SspMI CTAG 2 cut(s) 147, 459
StyD4I CCNGG 5 cut(s) 241, 520, 528, 671, 806
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 4 cut(s) 327, 456, 654, 915
TaiI ACGT 2 cut(s) 879, 888
TaqI TCGA 4 cut(s) 35, 173, 577, 844
TasI AATT 5 cut(s) 101, 224, 392, 474, 680
TauI GCSGC 2 cut(s) 158, 1013
TfiI GAWTC 4 cut(s) 376, 489, 559, 602
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 3 cut(s) 312, 705, 818
TseFI GTSAC 4 cut(s) 219, 524, 594, 1015
Tsp45I GTSAC 4 cut(s) 219, 524, 594, 1015
TspDTI ATGAA 4 cut(s) 610, 675, 906, 1012
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 3 cut(s) 312, 705, 818
VpaK11BI GGWCC 3 cut(s) 449, 462, 970
XapI RAATTY 2 cut(s) 392, 680
XceI RCATGY 2 cut(s) 541, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 672
XhoI CTCGAG 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 910
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 147, 459
ZraI GACGTC 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.