Rh7BG013300

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009259
Physical Location & Seq
Forward (+)
840906 .. 844353
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG013300.1

Sequence Viewer

Length: 762 bp
ATGCTAGACTATAGAAGGACAAGGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAAGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATATCAGGAGTAACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTCACAGCCTCCAATATTGGTCAACAGAGGATGGGTCCCCCGCAGTTGGAAAGATAAGTCTTCAGAACTTTCACAAGATGATGAACAACCTTCTAACATAACGCCAACCGTTGTCAAAGAGGAGGAAAGAGCATCTTGGTGGAGGTTCTGGTTAAAGAAGCCTAAAGTTGTTGAGGATCACCCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCACCAAATGATCCAAACTCTGGCCGGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCCAGTAACCCGTATCCGCTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACGTTTATGGCTTTCATGAGACTAAGACCAAAAAAGATCCGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

253

Amino Acids

29.1

Weight (kDa)

6.46

Isoelectric Point (pI)

66.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 3 - 236 1.2e-33 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 2 cut(s) 503, 629
AciI CCGC 3 cut(s) 274, 617, 754
AclWI GGATC 3 cut(s) 417, 488, 745
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 279
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 2 cut(s) 544, 637
AfiI CCNNNNNNNGG 4 cut(s) 279, 503, 629, 645
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 4 cut(s) 43, 49, 156, 578
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 3 cut(s) 417, 488, 745
AoxI GGCC 2 cut(s) 145, 505
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 145, 146, 268, 667
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 2 cut(s) 268, 667
AxyI CCTNAGG 2 cut(s) 558, 663
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 425
BbsI GAAGAC 2 cut(s) 285, 585
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 719
BccI CCATC 5 cut(s) 25, 70, 258, 623, 678
BciVI GTATCC 2 cut(s) 556, 624
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 2 cut(s) 5, 471
BfmI CTRYAG 2 cut(s) 10, 705
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 2 cut(s) 556, 624
BisI GCNGC 1 cut(s) 708
BlsI GCNGC 1 cut(s) 709
Bme18I GGWCC 2 cut(s) 268, 667
BmgT120I GGNCC 4 cut(s) 145, 146, 268, 667
BmiI GGNNCC 4 cut(s) 36, 147, 269, 270
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 374
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 2 cut(s) 285, 585
BsaAI YACGTR 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 597
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 503, 629, 645
Bse118I RCCGGY 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 603
Bse21I CCTNAGG 2 cut(s) 558, 663
Bse8I GATNNNNATC 1 cut(s) 597
BseGI GGATG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 4 cut(s) 279, 503, 629, 645
BseMII CTCAG 3 cut(s) 219, 549, 677
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 719
BshFI GGCC 2 cut(s) 147, 507
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 2 cut(s) 126, 254
BslI CCNNNNNNNGG 4 cut(s) 279, 503, 629, 645
BsmAI GTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 126, 254
BsnI GGCC 2 cut(s) 147, 507
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 149, 430
Bsp143I GATC 3 cut(s) 409, 493, 750
BspACI CCGC 3 cut(s) 274, 617, 754
BspANI GGCC 2 cut(s) 147, 507
BspCNI CTCAG 3 cut(s) 220, 550, 676
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 4 cut(s) 36, 147, 269, 270
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 3 cut(s) 417, 488, 745
BsrFI RCCGGY 1 cut(s) 507
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 507
BssMI GATC 3 cut(s) 409, 493, 750
Bst4CI ACNGT 2 cut(s) 53, 343
BstBAI YACGTR 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 228, 558, 663, 737
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 3 cut(s) 412, 496, 753
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 3 cut(s) 409, 493, 750
BstSFI CTRYAG 2 cut(s) 10, 705
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 719
BstV2I GAAGAC 2 cut(s) 285, 585
BstX2I RGATCY 1 cut(s) 750
BstYI RGATCY 1 cut(s) 750
Bsu36I CCTNAGG 2 cut(s) 558, 663
BsuI GTATCC 2 cut(s) 556, 624
BsuRI GGCC 2 cut(s) 147, 507
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 120
CciI TCATGA 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 507
Cfr13I GGNCC 4 cut(s) 145, 146, 268, 667
Csp6I GTAC 2 cut(s) 543, 636
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 4 cut(s) 587, 658, 690, 730
CviJI RGCY 8 cut(s) 147, 186, 227, 241, 394, 469, 507, 725
CviKI_1 RGCY 8 cut(s) 147, 186, 227, 241, 394, 469, 507, 725
CviQI GTAC 2 cut(s) 543, 636
DdeI CTNAG 4 cut(s) 228, 558, 663, 737
DpnI GATC 3 cut(s) 411, 495, 752
DpnII GATC 3 cut(s) 409, 493, 750
EaeI YGGCCR 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 268, 667
Eco57I CTGAAG 1 cut(s) 279
Eco72I CACGTG 1 cut(s) 425
Eco81I CCTNAGG 2 cut(s) 558, 663
EcoO109I RGGNCCY 2 cut(s) 146, 268
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 4 cut(s) 590, 661, 693, 733
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FaqI GGGAC 2 cut(s) 126, 254
FatI CATG 4 cut(s) 586, 657, 689, 729
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 708
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 708
FspBI CTAG 2 cut(s) 5, 471
GluI GCNGC 1 cut(s) 708
HaeIII GGCC 2 cut(s) 147, 507
HapII CCGG 1 cut(s) 508
Hin1II CATG 4 cut(s) 590, 661, 693, 733
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 643
HpaII CCGG 1 cut(s) 508
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 236, 256, 551
Hpy188I TCNGA 3 cut(s) 220, 298, 648
Hpy188III TCNNGA 6 cut(s) 156, 168, 431, 557, 665, 730
Hpy8I GTNNAC 3 cut(s) 236, 256, 551
HpyAV CCTTC 3 cut(s) 9, 90, 333
HpyCH4III ACNGT 2 cut(s) 53, 343
HpyCH4IV ACGT 2 cut(s) 424, 716
HpyCH4V TGCA 3 cut(s) 108, 533, 707
HpyF3I CTNAG 4 cut(s) 228, 558, 663, 737
HpySE526I ACGT 2 cut(s) 424, 716
Hsp92II CATG 4 cut(s) 590, 661, 693, 733
KflI GGGWCCC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 409, 493, 750
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 1 cut(s) 719
LweI GCATC 1 cut(s) 374
MaeI CTAG 2 cut(s) 5, 471
MaeII ACGT 2 cut(s) 424, 716
MaeIII GTNAC 3 cut(s) 172, 605, 712
MalI GATC 3 cut(s) 411, 495, 752
MboI GATC 3 cut(s) 409, 493, 750
MboII GAAGA 4 cut(s) 83, 285, 590, 602
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 2 cut(s) 149, 430
MluCI AATT 6 cut(s) 44, 74, 82, 213, 534, 676
MmeI TCCRAC 3 cut(s) 6, 260, 424
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 3 cut(s) 120, 370, 591
MspI CCGG 1 cut(s) 508
MunI CAATTG 1 cut(s) 534
NdeII GATC 3 cut(s) 409, 493, 750
NlaIII CATG 4 cut(s) 590, 661, 693, 733
NlaIV GGNNCC 4 cut(s) 36, 147, 269, 270
PagI TCATGA 1 cut(s) 729
PfeI GAWTC 1 cut(s) 643
PflMI CCANNNNNTGG 2 cut(s) 503, 629
PkrI GCNGC 1 cut(s) 709
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
PspCI CACGTG 1 cut(s) 425
PspN4I GGNNCC 4 cut(s) 36, 147, 269, 270
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 4 cut(s) 145, 146, 268, 667
PspPPI RGGWCCY 1 cut(s) 268
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 1 cut(s) 750
RsaI GTAC 2 cut(s) 544, 637
RsaNI GTAC 2 cut(s) 543, 636
RseI CAYNNNNRTG 3 cut(s) 120, 370, 591
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 1 cut(s) 708
Sau3AI GATC 3 cut(s) 409, 493, 750
Sau96I GGNCC 4 cut(s) 145, 146, 268, 667
SduI GDGCHC 2 cut(s) 149, 430
SetI ASST 9 cut(s) 26, 40, 134, 229, 325, 380, 427, 641, 719
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 2 cut(s) 10, 705
SinI GGWCC 2 cut(s) 268, 667
SmiMI CAYNNNNRTG 3 cut(s) 120, 370, 591
Sse9I AATT 6 cut(s) 44, 74, 82, 213, 534, 676
SsiI CCGC 3 cut(s) 274, 617, 754
SspI AATATT 1 cut(s) 249
SspMI CTAG 2 cut(s) 5, 471
TaaI ACNGT 2 cut(s) 53, 343
TaiI ACGT 2 cut(s) 427, 719
TasI AATT 6 cut(s) 44, 74, 82, 213, 534, 676
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 707
TspDTI ATGAA 4 cut(s) 330, 450, 603, 718
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 2 cut(s) 503, 629
VpaK11BI GGWCC 2 cut(s) 268, 667
XapI RAATTY 1 cut(s) 44
XspI CTAG 2 cut(s) 5, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.