Rw7G001060

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009259
Physical Location & Seq
Forward (+)
880275 .. 883470
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001060.1

Sequence Viewer

Length: 1056 bp
ATGGCAACAACAAAAACCTCCATTGCCAAAACCATAACCAAGCTCTATACTTGTAATAGTAATAGTGGGTCCCTCTCATCCATTCCCAATCATTTGGGTTCATTTCAGTCTTCTTCCTTGTTCAGCTCCTCTACTTCTGCAGCCTCCTCAGTAGCCGAGTCCCAATCAACAGTCTCGTCCCAAGCTTCAGAGAGGGAAAGGTCTAGATGGTCGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACTTTTGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGAAAAGATAAAAATGCTAGACTATAGACGGAAAAGGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAAGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATATCAGGAGTAACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTCACAGCCTCCAATATTGGTCAACAGAGGATGGGTCCCCCGCAGTTGGAAAGATAAGTCTTCAGAACTTTCACAAGATGATGAACAACCTTCTACCATAACGCCAACCATTGTCAAAGAGGAGGAAAGAGCCTCCTGGTGGAGGTTCTGGTTAAAGAAGCCTAAAGTTGTTGAGGATCACCCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCGCCAAATGATCCAAACTCTGGCCAGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCCAGTAACCCGTATCCACTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACGTTTATGGCTTTCATGAGACTAAGACCAAAAAAGATCCGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

351

Amino Acids

39.71

Weight (kDa)

9.09

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 77 - 334 4.7e-44 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 2 cut(s) 797, 923
AciI CCGC 3 cut(s) 568, 779, 1048
AclWI GGATC 3 cut(s) 711, 782, 1039
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 171, 573
AcvI CACGTG 1 cut(s) 719
AfaI GTAC 2 cut(s) 838, 931
AfiI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 4 cut(s) 337, 343, 450, 872
AjnI CCWGG 2 cut(s) 232, 662
AluBI AGCT 5 cut(s) 43, 126, 185, 239, 521
AluI AGCT 5 cut(s) 43, 126, 185, 239, 521
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 2 cut(s) 178, 1021
AlwI GGATC 3 cut(s) 711, 782, 1039
AoxI GGCC 3 cut(s) 250, 439, 799
ApaI GGGCCC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 140, 220, 1001
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 5 cut(s) 69, 439, 440, 562, 961
AsuHPI GGTGA 1 cut(s) 698
AvaII GGWCC 3 cut(s) 69, 562, 961
AxyI CCTNAGG 2 cut(s) 852, 957
BaeGI GKGCMC 1 cut(s) 443
BalI TGGCCA 1 cut(s) 801
BanII GRGCYC 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 719
BbsI GAAGAC 3 cut(s) 102, 579, 879
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 3 cut(s) 152, 207, 1013
BccI CCATC 6 cut(s) 201, 319, 364, 552, 917, 972
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 2 cut(s) 234, 664
BciVI GTATCC 2 cut(s) 850, 918
BcoDI GTCTC 2 cut(s) 178, 1021
BfaI CTAG 3 cut(s) 204, 299, 765
BfmI CTRYAG 3 cut(s) 138, 304, 999
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 2 cut(s) 850, 918
BisI GCNGC 3 cut(s) 141, 221, 1002
BlsI GCNGC 3 cut(s) 142, 222, 1003
Bme1390I CCNGG 2 cut(s) 234, 664
Bme18I GGWCC 3 cut(s) 69, 562, 961
BmgT120I GGNCC 5 cut(s) 69, 439, 440, 562, 961
BmiI GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
BmrFI CCNGG 2 cut(s) 234, 664
BmrI ACTGGG 1 cut(s) 891
BmuI ACTGGG 1 cut(s) 891
BpiI GAAGAC 3 cut(s) 102, 579, 879
BpmI CTGGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
Bse1I ACTGG 2 cut(s) 802, 897
Bse21I CCTNAGG 2 cut(s) 852, 957
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 2 cut(s) 234, 664
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 77, 563
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 162, 513, 843, 971
BseNI ACTGG 2 cut(s) 802, 897
BseRI GAGGAG 3 cut(s) 118, 136, 662
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 3 cut(s) 152, 207, 1013
BshFI GGCC 3 cut(s) 252, 441, 801
BsiHKAI GWGCWC 1 cut(s) 724
BslFI GGGAC 5 cut(s) 55, 145, 163, 420, 548
BslI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
BsmAI GTCTC 2 cut(s) 178, 1021
BsmFI GGGAC 5 cut(s) 55, 145, 163, 420, 548
BsnI GGCC 3 cut(s) 252, 441, 801
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 443, 724
Bsp143I GATC 3 cut(s) 703, 787, 1044
BspACI CCGC 3 cut(s) 568, 779, 1048
BspANI GGCC 3 cut(s) 252, 441, 801
BspCNI CTCAG 4 cut(s) 161, 514, 844, 970
BspHI TCATGA 1 cut(s) 1023
BspLI GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
BspMAI CTGCAG 2 cut(s) 142, 1003
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 3 cut(s) 711, 782, 1039
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 2 cut(s) 802, 897
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 703, 787, 1044
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 2 cut(s) 234, 664
Bst4CI ACNGT 2 cut(s) 172, 347
BstBAI YACGTR 1 cut(s) 719
BstDEI CTNAG 5 cut(s) 148, 522, 852, 957, 1031
BstENI CCTNNNNNAGG 1 cut(s) 667
BstF5I GGATG 2 cut(s) 77, 563
BstKTI GATC 3 cut(s) 706, 790, 1047
BstMAI GTCTC 2 cut(s) 178, 1021
BstMBI GATC 3 cut(s) 703, 787, 1044
BstNI CCWGG 2 cut(s) 234, 664
BstSCI CCNGG 2 cut(s) 232, 662
BstSFI CTRYAG 3 cut(s) 138, 304, 999
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 152, 207, 1013
BstV2I GAAGAC 3 cut(s) 102, 579, 879
BstX2I RGATCY 1 cut(s) 1044
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 1044
Bsu36I CCTNAGG 2 cut(s) 852, 957
BsuI GTATCC 2 cut(s) 850, 918
BsuRI GGCC 3 cut(s) 252, 441, 801
BtsCI GGATG 2 cut(s) 77, 563
BtsIMutI CAGTG 2 cut(s) 352, 809
BveI ACCTGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 1023
Cfr13I GGNCC 5 cut(s) 69, 439, 440, 562, 961
Csp6I GTAC 2 cut(s) 837, 930
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 4 cut(s) 881, 952, 984, 1024
CviQI GTAC 2 cut(s) 837, 930
DdeI CTNAG 5 cut(s) 148, 522, 852, 957, 1031
DpnI GATC 3 cut(s) 705, 789, 1046
DpnII GATC 3 cut(s) 703, 787, 1044
EaeI YGGCCR 1 cut(s) 799
EciI GGCGGA 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 3 cut(s) 69, 562, 961
Eco57I CTGAAG 2 cut(s) 171, 573
Eco72I CACGTG 1 cut(s) 719
Eco81I CCTNAGG 2 cut(s) 852, 957
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoO109I RGGNCCY 3 cut(s) 69, 440, 562
EcoRII CCWGG 2 cut(s) 232, 662
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 884, 955, 987, 1027
FaqI GGGAC 5 cut(s) 55, 145, 163, 420, 548
FatI CATG 4 cut(s) 880, 951, 983, 1023
FauI CCCGC 1 cut(s) 575
Fnu4HI GCNGC 3 cut(s) 141, 221, 1002
FokI GGATG 2 cut(s) 64, 570
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 141, 221, 1002
FspBI CTAG 3 cut(s) 204, 299, 765
GluI GCNGC 3 cut(s) 141, 221, 1002
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 3 cut(s) 252, 441, 801
Hin1II CATG 4 cut(s) 884, 955, 987, 1027
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 2 cut(s) 158, 937
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 3 cut(s) 530, 550, 845
Hpy188I TCNGA 5 cut(s) 190, 275, 514, 592, 942
Hpy188III TCNNGA 7 cut(s) 204, 450, 462, 725, 851, 959, 1024
Hpy8I GTNNAC 3 cut(s) 530, 550, 845
HpyAV CCTTC 3 cut(s) 270, 384, 627
HpyCH4III ACNGT 2 cut(s) 172, 347
HpyCH4IV ACGT 2 cut(s) 718, 1010
HpyCH4V TGCA 4 cut(s) 140, 402, 827, 1001
HpyF3I CTNAG 5 cut(s) 148, 522, 852, 957, 1031
HpySE526I ACGT 2 cut(s) 718, 1010
Hsp92II CATG 4 cut(s) 884, 955, 987, 1027
KflI GGGWCCC 2 cut(s) 69, 562
Kzo9I GATC 3 cut(s) 703, 787, 1044
LmnI GCTCC 3 cut(s) 131, 236, 727
Lsp1109I GCAGC 3 cut(s) 152, 207, 1013
MaeI CTAG 3 cut(s) 204, 299, 765
MaeII ACGT 2 cut(s) 718, 1010
MaeIII GTNAC 3 cut(s) 466, 899, 1006
MalI GATC 3 cut(s) 705, 789, 1046
MboI GATC 3 cut(s) 703, 787, 1044
MboII GAAGA 7 cut(s) 102, 105, 221, 377, 579, 884, 896
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 1 cut(s) 1044
MhlI GDGCHC 2 cut(s) 443, 724
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 6 cut(s) 338, 368, 376, 507, 828, 970
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 300, 554, 718
Mox20I TGGCCA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 801
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 2 cut(s) 414, 885
Msp20I TGGCCA 1 cut(s) 801
MspR9I CCNGG 2 cut(s) 234, 664
MunI CAATTG 1 cut(s) 828
MvaI CCWGG 2 cut(s) 234, 664
NdeII GATC 3 cut(s) 703, 787, 1044
NlaIII CATG 4 cut(s) 884, 955, 987, 1027
NlaIV GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
NmeAIII GCCGAG 1 cut(s) 181
PagI TCATGA 1 cut(s) 1023
PfeI GAWTC 1 cut(s) 937
PflMI CCANNNNNTGG 2 cut(s) 797, 923
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 142, 222, 1003
PleI GAGTC 1 cut(s) 166
PmaCI CACGTG 1 cut(s) 719
PmlI CACGTG 1 cut(s) 719
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 719
PpuMI RGGWCCY 2 cut(s) 69, 562
Psp5II RGGWCCY 2 cut(s) 69, 562
Psp6I CCWGG 2 cut(s) 232, 662
PspCI CACGTG 1 cut(s) 719
PspGI CCWGG 2 cut(s) 232, 662
PspN4I GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 5 cut(s) 69, 439, 440, 562, 961
PspPPI RGGWCCY 2 cut(s) 69, 562
PstI CTGCAG 2 cut(s) 142, 1003
PsuI RGATCY 1 cut(s) 1044
RsaI GTAC 2 cut(s) 838, 931
RsaNI GTAC 2 cut(s) 837, 930
RseI CAYNNNNRTG 2 cut(s) 414, 885
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 3 cut(s) 141, 221, 1002
Sau3AI GATC 3 cut(s) 703, 787, 1044
Sau96I GGNCC 5 cut(s) 69, 439, 440, 562, 961
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 234, 664
SduI GDGCHC 2 cut(s) 443, 724
SfcI CTRYAG 3 cut(s) 138, 304, 999
SinI GGWCC 3 cut(s) 69, 562, 961
SmiMI CAYNNNNRTG 2 cut(s) 414, 885
Sse9I AATT 6 cut(s) 338, 368, 376, 507, 828, 970
SsiI CCGC 3 cut(s) 568, 779, 1048
SspI AATATT 1 cut(s) 543
SspMI CTAG 3 cut(s) 204, 299, 765
StyD4I CCNGG 2 cut(s) 232, 662
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 172, 347
TaiI ACGT 2 cut(s) 721, 1013
TaqI TCGA 1 cut(s) 212
TasI AATT 6 cut(s) 338, 368, 376, 507, 828, 970
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 2 cut(s) 352, 809
TseI GCWGC 3 cut(s) 140, 220, 1001
TspDTI ATGAA 5 cut(s) 90, 624, 744, 897, 1012
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 352, 809
Van91I CCANNNNNTGG 2 cut(s) 797, 923
VpaK11BI GGWCC 3 cut(s) 69, 562, 961
XagI CCTNNNNNAGG 1 cut(s) 667
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 3 cut(s) 204, 299, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.