RLG00000005466

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009259
Physical Location & Seq
Reverse (-)
67898876 .. 67901382
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005466

Sequence Viewer

Length: 1065 bp
ATGGCAACAACAAAAACCTCCTCCATTGCCAAAACCATAACCAAGCTCTATACTAGTAATAGTAATAGTAATAGTGGGTCCCTCTCTTCCATTCCCAATCATTTGGGTTCATTTCAGTCTTCTTCCTTGTTCAGCTCCTCTACTTCTGCAGCTTCCTCAGTAGCCGAGTCTCAATCAACGGTCTCGTCCCAAGCTTCAGAGAGGGAAAGGTCTAGATGGTCGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACTTTTGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGAAAAGATAAAAATGCTAGACTATAGACGGAAAAGGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAAGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATATCAGGAGTAACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTCACAGCCTCCAATATTGGTCAACAGAGGATGGGTCCCCCGCAGTTGGAAAGATAAGTCTTCAGAACTTTCACAAGATGATGAACAACCTTCTAACATAACGCCAACCGTTGTCAAAGAGGAGGAAAGAGCATCTTGGTGGAGGTTCTGGTTAAAGAAGCCTAAAGTTGTTGAGGATCACCCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCACCAAATGATCCAAACTCTGGCCAGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCCAGTAACCCGTATCCGCTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACATTTATGGCTTTCATGAGACTAAGACCAAAGAAGATCCGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

355

Amino Acids

39.98

Weight (kDa)

9.16

Isoelectric Point (pI)

64.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 80 - 337 5.7e-44 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 423
AccB7I CCANNNNNTGG 2 cut(s) 806, 932
AciI CCGC 3 cut(s) 577, 920, 1057
AclWI GGATC 3 cut(s) 720, 791, 1048
AcoI YGGCCR 1 cut(s) 808
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 180, 582
AcvI CACGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 847, 940
AfiI CCNNNNNNNGG 4 cut(s) 582, 806, 932, 948
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 4 cut(s) 346, 352, 459, 881
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 6 cut(s) 46, 135, 152, 194, 248, 530
AluI AGCT 6 cut(s) 46, 135, 152, 194, 248, 530
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 3 cut(s) 174, 187, 1030
AlwI GGATC 3 cut(s) 720, 791, 1048
AoxI GGCC 3 cut(s) 259, 448, 808
ApaI GGGCCC 1 cut(s) 452
ApeKI GCWGC 3 cut(s) 149, 229, 1010
ApoI RAATTY 1 cut(s) 347
AspS9I GGNCC 5 cut(s) 78, 448, 449, 571, 970
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 3 cut(s) 78, 571, 970
AxyI CCTNAGG 2 cut(s) 861, 966
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 810
BanII GRGCYC 1 cut(s) 452
BbrPI CACGTG 1 cut(s) 728
BbsI GAAGAC 3 cut(s) 111, 588, 888
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 3 cut(s) 161, 216, 1022
BccI CCATC 6 cut(s) 210, 328, 373, 561, 926, 981
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 2 cut(s) 859, 927
BcoDI GTCTC 3 cut(s) 174, 187, 1030
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 4 cut(s) 54, 213, 308, 774
BfmI CTRYAG 3 cut(s) 147, 313, 1008
BfuAI ACCTGC 1 cut(s) 423
BfuI GTATCC 2 cut(s) 859, 927
BisI GCNGC 3 cut(s) 150, 230, 1011
BlsI GCNGC 3 cut(s) 151, 231, 1012
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 3 cut(s) 78, 571, 970
BmgT120I GGNCC 5 cut(s) 78, 448, 449, 571, 970
BmiI GGNNCC 6 cut(s) 79, 80, 339, 450, 572, 573
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 900
BpiI GAAGAC 3 cut(s) 111, 588, 888
BpmI CTGGAG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 4 cut(s) 582, 806, 932, 948
Bse1I ACTGG 2 cut(s) 811, 906
Bse21I CCTNAGG 2 cut(s) 861, 966
Bse3DI GCAATG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 572
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 4 cut(s) 582, 806, 932, 948
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 4 cut(s) 171, 522, 852, 980
BseNI ACTGG 2 cut(s) 811, 906
BseRI GAGGAG 3 cut(s) 10, 127, 671
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 161, 216, 1022
BshFI GGCC 3 cut(s) 261, 450, 810
BsiHKAI GWGCWC 1 cut(s) 733
BslFI GGGAC 4 cut(s) 64, 172, 429, 557
BslI CCNNNNNNNGG 4 cut(s) 582, 806, 932, 948
BsmAI GTCTC 3 cut(s) 174, 187, 1030
BsmFI GGGAC 4 cut(s) 64, 172, 429, 557
BsnI GGCC 3 cut(s) 261, 450, 810
Bso31I GGTCTC 1 cut(s) 187
Bsp120I GGGCCC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 452, 733
Bsp143I GATC 3 cut(s) 712, 796, 1053
BspACI CCGC 3 cut(s) 577, 920, 1057
BspANI GGCC 3 cut(s) 261, 450, 810
BspCNI CTCAG 4 cut(s) 170, 523, 853, 979
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 6 cut(s) 79, 80, 339, 450, 572, 573
BspMAI CTGCAG 2 cut(s) 151, 1012
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 720, 791, 1048
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 2 cut(s) 811, 906
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 3 cut(s) 712, 796, 1053
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 181, 356, 646
Bst6I CTCTTC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 728
BstDEI CTNAG 5 cut(s) 157, 531, 861, 966, 1040
BstF5I GGATG 1 cut(s) 572
BstKTI GATC 3 cut(s) 715, 799, 1056
BstMAI GTCTC 3 cut(s) 174, 187, 1030
BstMBI GATC 3 cut(s) 712, 796, 1053
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 3 cut(s) 147, 313, 1008
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 161, 216, 1022
BstV2I GAAGAC 3 cut(s) 111, 588, 888
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 1053
Bsu36I CCTNAGG 2 cut(s) 861, 966
BsuI GTATCC 2 cut(s) 859, 927
BsuRI GGCC 3 cut(s) 261, 450, 810
BtsCI GGATG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 361, 818
BveI ACCTGC 1 cut(s) 423
CciI TCATGA 1 cut(s) 1032
Cfr13I GGNCC 5 cut(s) 78, 448, 449, 571, 970
Csp6I GTAC 2 cut(s) 846, 939
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 4 cut(s) 890, 961, 993, 1033
CviQI GTAC 2 cut(s) 846, 939
DdeI CTNAG 5 cut(s) 157, 531, 861, 966, 1040
DpnI GATC 3 cut(s) 714, 798, 1055
DpnII GATC 3 cut(s) 712, 796, 1053
EaeI YGGCCR 1 cut(s) 808
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 78, 571, 970
Eco57I CTGAAG 2 cut(s) 180, 582
Eco72I CACGTG 1 cut(s) 728
Eco81I CCTNAGG 2 cut(s) 861, 966
EcoO109I RGGNCCY 3 cut(s) 78, 449, 571
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 4 cut(s) 893, 964, 996, 1036
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 4 cut(s) 64, 172, 429, 557
FatI CATG 4 cut(s) 889, 960, 992, 1032
FauI CCCGC 1 cut(s) 584
Fnu4HI GCNGC 3 cut(s) 150, 230, 1011
FokI GGATG 1 cut(s) 579
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 150, 230, 1011
FspBI CTAG 4 cut(s) 54, 213, 308, 774
GluI GCNGC 3 cut(s) 150, 230, 1011
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 261, 450, 810
Hin1II CATG 4 cut(s) 893, 964, 996, 1036
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 2 cut(s) 167, 946
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 3 cut(s) 539, 559, 854
Hpy188I TCNGA 5 cut(s) 199, 284, 523, 601, 951
Hpy188III TCNNGA 7 cut(s) 213, 459, 471, 734, 860, 968, 1033
Hpy8I GTNNAC 3 cut(s) 539, 559, 854
HpyAV CCTTC 3 cut(s) 279, 393, 636
HpyCH4III ACNGT 3 cut(s) 181, 356, 646
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 4 cut(s) 149, 411, 836, 1010
HpyF3I CTNAG 5 cut(s) 157, 531, 861, 966, 1040
HpySE526I ACGT 1 cut(s) 727
Hsp92II CATG 4 cut(s) 893, 964, 996, 1036
KflI GGGWCCC 2 cut(s) 78, 571
Kzo9I GATC 3 cut(s) 712, 796, 1053
LmnI GCTCC 3 cut(s) 140, 245, 736
Lsp1109I GCAGC 3 cut(s) 161, 216, 1022
LweI GCATC 1 cut(s) 677
MaeI CTAG 4 cut(s) 54, 213, 308, 774
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 3 cut(s) 475, 908, 1015
MalI GATC 3 cut(s) 714, 798, 1055
MboI GATC 3 cut(s) 712, 796, 1053
MboII GAAGA 9 cut(s) 78, 111, 114, 230, 386, 588, 893, 905, 1063
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 2 cut(s) 452, 733
MlsI TGGCCA 1 cut(s) 810
MluCI AATT 6 cut(s) 347, 377, 385, 516, 837, 979
MluNI TGGCCA 1 cut(s) 810
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 3 cut(s) 309, 563, 727
Mox20I TGGCCA 1 cut(s) 810
MscI TGGCCA 1 cut(s) 810
MseI TTAA 1 cut(s) 689
MslI CAYNNNNRTG 3 cut(s) 423, 673, 894
Msp20I TGGCCA 1 cut(s) 810
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 1 cut(s) 243
NdeII GATC 3 cut(s) 712, 796, 1053
NlaIII CATG 4 cut(s) 893, 964, 996, 1036
NlaIV GGNNCC 6 cut(s) 79, 80, 339, 450, 572, 573
NmeAIII GCCGAG 1 cut(s) 190
PagI TCATGA 1 cut(s) 1032
PfeI GAWTC 1 cut(s) 946
PflMI CCANNNNNTGG 2 cut(s) 806, 932
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 3 cut(s) 151, 231, 1012
PleI GAGTC 1 cut(s) 175
PmaCI CACGTG 1 cut(s) 728
PmlI CACGTG 1 cut(s) 728
PpsI GAGTC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 2 cut(s) 78, 571
Psp5II RGGWCCY 2 cut(s) 78, 571
Psp6I CCWGG 1 cut(s) 241
PspCI CACGTG 1 cut(s) 728
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 6 cut(s) 79, 80, 339, 450, 572, 573
PspOMI GGGCCC 1 cut(s) 448
PspPI GGNCC 5 cut(s) 78, 448, 449, 571, 970
PspPPI RGGWCCY 2 cut(s) 78, 571
PstI CTGCAG 2 cut(s) 151, 1012
PsuI RGATCY 1 cut(s) 1053
RsaI GTAC 2 cut(s) 847, 940
RsaNI GTAC 2 cut(s) 846, 939
RseI CAYNNNNRTG 3 cut(s) 423, 673, 894
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 3 cut(s) 150, 230, 1011
Sau3AI GATC 3 cut(s) 712, 796, 1053
Sau96I GGNCC 5 cut(s) 78, 448, 449, 571, 970
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 2 cut(s) 452, 733
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 3 cut(s) 147, 313, 1008
SinI GGWCC 3 cut(s) 78, 571, 970
SmiMI CAYNNNNRTG 3 cut(s) 423, 673, 894
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 6 cut(s) 347, 377, 385, 516, 837, 979
SsiI CCGC 3 cut(s) 577, 920, 1057
SspI AATATT 1 cut(s) 552
SspMI CTAG 4 cut(s) 54, 213, 308, 774
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 181, 356, 646
TaiI ACGT 1 cut(s) 730
TaqI TCGA 1 cut(s) 221
TasI AATT 6 cut(s) 347, 377, 385, 516, 837, 979
TfiI GAWTC 1 cut(s) 946
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 2 cut(s) 361, 818
TseI GCWGC 3 cut(s) 149, 229, 1010
TspDTI ATGAA 5 cut(s) 99, 633, 753, 906, 1021
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 2 cut(s) 361, 818
Van91I CCANNNNNTGG 2 cut(s) 806, 932
VpaK11BI GGWCC 3 cut(s) 78, 571, 970
XapI RAATTY 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 4 cut(s) 54, 213, 308, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.