Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009259

Physical Location & Seq

Genomic Coordinates Reverse (-)

17816263 .. 17819492

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G234900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAGCAAAAACCTCCATTGCTAAAACCATAACTAAGCTTTATTGTAGTGGGTCCCCTTCTTCTTTCTCCAAACATTTGGTCCCACTACCACCACCGTCACTCTCATTATCTCCTTCCTTCTTCAGCTCCTCGCCTGCTGTTTCCTCAGTACCCGAGTCTCAATCAACGCTCTCTTCCCAAGCTACAGAGAGGGAAAGGTCGAGATGGTCCAAATGGCTGCTGTTTCTTCCTGGAGCTGTCTCTTTTGGCCTTGGCACTTGGCAGATCTTCAGAAGGCAAGAGAAGATAAAAATGTTAGATTACAGACAGAAGAGGTTGGAAATGGAACCTGTAAACTTCAACAATGTCTCACTGTCAAGTGAAGAATTGGATCATTTGGAGTTTAGGAGGGTGATATGCAAAGGATATTTTGATGAGGAAAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATTTCCGGAGTCACTGAAAATGGCTACTATGTCATCACACCTCTTGTGCCGGTCTCTGACAAACCTGAGCGTGTGCAGCCACCAATTTTAGTCAACAGAGGATGGGTACCTCGAAGTTGGAAAGAAAAGTCTTCAGAAGTTCATGAAGATGGTGAACAACCTTCTAATGTAGCACCCTCCTCTGTTCAAGAGAATGAAAGAAGGTCTTGGTGGAGGTTCTGGATGAAGAAGTCTAAAGTCGTTGAGGATCAGCAGACCCCTGCTTTTGCTCCTGTTGAAATTGTTGGAGTAGTTCGAGGGAGTGAGAAGCCTAGCATATTTGTTCCACCAAATGATCCAAAATCCTCCCAGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGCCTCCCTGAGGATACTGTTTACATCGAAGACATAAATGAAAATGTCAATCCGAGTAACCCTTACCCGGTTCCAAAGGATGTTGGTGCCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACGTTGACATGGTATTCCCTGTCTGCAGCAGTTACATTCATGGCTTTCAAGAGACTGAGACCCAAAAAGAGCCGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURF1

Protein Analysis

353

Amino Acids

39.99

Weight (kDa)

9.35

Isoelectric Point (pI)

73.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17910
fragaria_vesca	FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500
malus_domestica	MD06G1228400.v1.1 MD14G1237600.v1.1
prunus_persica	Prupe.5G234900_v2.0.a1
pyrus_communis	pycom06g20470
rosa_chinensis	RchiOBHm_Chr7g0178161
rosa_laevigata	RLG00000005466
rosa_multiflora	Rmu_sc0007855.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275120
rosa_rugosa	Rorug06G0413800 Rorug06G0413800
rosa_samantha	Rh7AG013400 Rh7BG013300 Rh7CG013200 Rh7DG013500
rosa_wichuraiana	Rw7G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	562
AccB1I	GGYRCC	2 cut(s)	562, 932
AccIII	TCCGGA	1 cut(s)	461
AclWI	GGATC	3 cut(s)	381, 711, 785
AcuI	CTGAAG	3 cut(s)	109, 256, 573
AfaI	GTAC	3 cut(s)	153, 564, 841
AfiI	CCNNNNNNNGG	4 cut(s)	807, 856, 913, 942
AgsI	TTSAA	5 cut(s)	343, 450, 644, 734, 1027
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	40, 129, 185, 239
AluI	AGCT	4 cut(s)	40, 129, 185, 239
Alw26I	GTCTC	6 cut(s)	165, 247, 355, 514, 1024, 1030
AlwI	GGATC	3 cut(s)	381, 711, 785
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	3 cut(s)	250, 439, 847
ApaI	GGGCCC	1 cut(s)	443
ApeKI	GCWGC	4 cut(s)	5, 220, 532, 1004
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	562
AspS9I	GGNCC	6 cut(s)	54, 82, 210, 439, 440, 964
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	2 cut(s)	406, 620
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	4 cut(s)	54, 82, 210, 964
AxyI	CCTNAGG	2 cut(s)	855, 960
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	2 cut(s)	562, 932
BanII	GRGCYC	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	579, 882
BbvI	GCAGC	4 cut(s)	17, 207, 544, 1016
BccI	CCATC	4 cut(s)	201, 552, 599, 975
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	853
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	6 cut(s)	165, 247, 355, 514, 1024, 1030
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	2 cut(s)	186, 1002
BfuI	GTATCC	1 cut(s)	853
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	4 cut(s)	6, 221, 533, 1005
BlsI	GCNGC	4 cut(s)	7, 222, 534, 1006
Bme1390I	CCNGG	2 cut(s)	234, 914
Bme18I	GGWCC	4 cut(s)	54, 82, 210, 964
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	6 cut(s)	54, 82, 210, 439, 440, 964
BmiI	GGNNCC	8 cut(s)	55, 56, 84, 330, 441, 564, 918, 934
BmrFI	CCNGG	2 cut(s)	234, 914
BmrI	ACTGGG	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	2 cut(s)	579, 882
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	914
BsaI	GGTCTC	2 cut(s)	514, 1030
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	4 cut(s)	807, 856, 913, 942
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	805
Bse21I	CCTNAGG	2 cut(s)	855, 960
Bse3DI	GCAATG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	3 cut(s)	563, 684, 931
BseLI	CCNNNNNNNGG	4 cut(s)	807, 856, 913, 942
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	5 cut(s)	162, 513, 846, 974, 1025
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	2 cut(s)	121, 625
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	4 cut(s)	17, 207, 544, 1016
BsgI	GTGCAG	1 cut(s)	551
BshFI	GGCC	3 cut(s)	252, 441, 849
BshNI	GGYRCC	2 cut(s)	562, 932
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	462, 506, 914, 1051
BslFI	GGGAC	2 cut(s)	40, 68
BslI	CCNNNNNNNGG	4 cut(s)	807, 856, 913, 942
BsmAI	GTCTC	6 cut(s)	165, 247, 355, 514, 1024, 1030
BsmFI	GGGAC	2 cut(s)	40, 68
BsnI	GGCC	3 cut(s)	252, 441, 849
Bso31I	GGTCTC	2 cut(s)	514, 1030
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp13I	TCCGGA	1 cut(s)	461
Bsp143I	GATC	4 cut(s)	267, 373, 703, 790
BspANI	GGCC	3 cut(s)	252, 441, 849
BspCNI	CTCAG	5 cut(s)	161, 514, 847, 973, 1026
BspEI	TCCGGA	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	8 cut(s)	55, 56, 84, 330, 441, 564, 918, 934
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	3 cut(s)	381, 711, 785
BspT107I	GGYRCC	2 cut(s)	562, 932
BspTNI	GGTCTC	2 cut(s)	514, 1030
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	4 cut(s)	267, 373, 703, 790
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	99, 357, 865
Bst6I	CTCTTC	2 cut(s)	181, 308
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	6 cut(s)	36, 148, 522, 855, 960, 1034
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstF5I	GGATG	3 cut(s)	563, 684, 931
BstKTI	GATC	4 cut(s)	270, 376, 706, 793
BstMAI	GTCTC	6 cut(s)	165, 247, 355, 514, 1024, 1030
BstMBI	GATC	4 cut(s)	267, 373, 703, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	232, 912
BstSFI	CTRYAG	2 cut(s)	186, 1002
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	4 cut(s)	17, 207, 544, 1016
BstV2I	GAAGAC	2 cut(s)	579, 882
BstX2I	RGATCY	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	267
Bsu36I	CCTNAGG	2 cut(s)	855, 960
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	252, 441, 849
BtsCI	GGATG	3 cut(s)	563, 684, 931
BtsIMutI	CAGTG	3 cut(s)	353, 468, 812
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	6 cut(s)	54, 82, 210, 439, 440, 964
Csp6I	GTAC	3 cut(s)	152, 563, 840
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	4 cut(s)	599, 955, 987, 1018
CviQI	GTAC	3 cut(s)	152, 563, 840
DdeI	CTNAG	6 cut(s)	36, 148, 522, 855, 960, 1034
DpnI	GATC	4 cut(s)	269, 375, 705, 792
DpnII	GATC	4 cut(s)	267, 373, 703, 790
Eam1104I	CTCTTC	2 cut(s)	181, 308
EarI	CTCTTC	2 cut(s)	181, 308
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	2 cut(s)	514, 1030
Eco47I	GGWCC	4 cut(s)	54, 82, 210, 964
Eco57I	CTGAAG	3 cut(s)	109, 256, 573
Eco81I	CCTNAGG	2 cut(s)	855, 960
Eco88I	CYCGRG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoO109I	RGGNCCY	2 cut(s)	54, 440
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	4 cut(s)	602, 958, 990, 1021
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FaqI	GGGAC	2 cut(s)	40, 68
FatI	CATG	4 cut(s)	598, 954, 986, 1017
Fnu4HI	GCNGC	4 cut(s)	6, 221, 533, 1005
FokI	GGATG	3 cut(s)	570, 691, 938
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	4 cut(s)	6, 221, 533, 1005
FspBI	CTAG	1 cut(s)	768
GluI	GCNGC	4 cut(s)	6, 221, 533, 1005
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	252, 441, 849
HapII	CCGG	4 cut(s)	462, 506, 914, 1051
Hin1II	CATG	4 cut(s)	602, 958, 990, 1021
HincII	GTYRAC	2 cut(s)	550, 984
HindII	GTYRAC	2 cut(s)	550, 984
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	158, 465, 940
HpaII	CCGG	4 cut(s)	462, 506, 914, 1051
HphI	GGTGA	2 cut(s)	406, 620
Hpy166II	GTNNAC	5 cut(s)	337, 550, 611, 868, 984
Hpy188I	TCNGA	5 cut(s)	275, 514, 592, 900, 945
Hpy188III	TCNNGA	8 cut(s)	204, 450, 462, 599, 644, 676, 962, 1027
Hpy8I	GTNNAC	5 cut(s)	337, 550, 611, 868, 984
HpyAV	CCTTC	6 cut(s)	69, 126, 130, 270, 627, 651
HpyCH4III	ACNGT	3 cut(s)	99, 357, 865
HpyCH4IV	ACGT	1 cut(s)	980
HpyCH4V	TGCA	4 cut(s)	402, 532, 830, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	6 cut(s)	36, 148, 522, 855, 960, 1034
HpySE526I	ACGT	1 cut(s)	980
Hsp92II	CATG	4 cut(s)	602, 958, 990, 1021
KflI	GGGWCCC	1 cut(s)	54
Kpn2I	TCCGGA	1 cut(s)	461
KpnI	GGTACC	1 cut(s)	566
Kzo9I	GATC	4 cut(s)	267, 373, 703, 790
LmnI	GCTCC	3 cut(s)	134, 236, 730
Lsp1109I	GCAGC	4 cut(s)	17, 207, 544, 1016
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	4 cut(s)	99, 466, 902, 1009
MalI	GATC	4 cut(s)	269, 375, 705, 792
MboI	GATC	4 cut(s)	267, 373, 703, 790
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	5 cut(s)	368, 540, 735, 831, 973
MlyI	GAGTC	2 cut(s)	167, 474
MmeI	TCCRAC	3 cut(s)	300, 554, 721
MroI	TCCGGA	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	603
MspI	CCGG	4 cut(s)	462, 506, 914, 1051
MspR9I	CCNGG	2 cut(s)	234, 914
MunI	CAATTG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	532
NciI	CCSGG	1 cut(s)	914
NdeII	GATC	4 cut(s)	267, 373, 703, 790
NlaIII	CATG	4 cut(s)	602, 958, 990, 1021
NlaIV	GGNNCC	8 cut(s)	55, 56, 84, 330, 441, 564, 918, 934
NmuCI	GTSAC	2 cut(s)	99, 466
PagI	TCATGA	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	940
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	7, 222, 534, 1006
PleI	GAGTC	2 cut(s)	166, 473
PpsI	GAGTC	2 cut(s)	166, 473
PpuMI	RGGWCCY	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	8 cut(s)	55, 56, 84, 330, 441, 564, 918, 934
PspOMI	GGGCCC	1 cut(s)	439
PspPI	GGNCC	6 cut(s)	54, 82, 210, 439, 440, 964
PspPPI	RGGWCCY	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	3 cut(s)	153, 564, 841
RsaNI	GTAC	3 cut(s)	152, 563, 840
RseI	CAYNNNNRTG	1 cut(s)	603
SatI	GCNGC	4 cut(s)	6, 221, 533, 1005
Sau3AI	GATC	4 cut(s)	267, 373, 703, 790
Sau96I	GGNCC	6 cut(s)	54, 82, 210, 439, 440, 964
SchI	GAGTC	2 cut(s)	167, 474
ScrFI	CCNGG	2 cut(s)	234, 914
SduI	GDGCHC	1 cut(s)	443
SfcI	CTRYAG	2 cut(s)	186, 1002
SinI	GGWCC	4 cut(s)	54, 82, 210, 964
SmiMI	CAYNNNNRTG	1 cut(s)	603
Sse9I	AATT	5 cut(s)	368, 540, 735, 831, 973
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	2 cut(s)	232, 912
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	99, 357, 865
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	4 cut(s)	203, 568, 751, 873
TasI	AATT	5 cut(s)	368, 540, 735, 831, 973
TfiI	GAWTC	1 cut(s)	940
TscAI	CASTG	3 cut(s)	360, 475, 812
TseFI	GTSAC	2 cut(s)	99, 466
TseI	GCWGC	4 cut(s)	5, 220, 532, 1004
Tsp45I	GTSAC	2 cut(s)	99, 466
TspDTI	ATGAA	6 cut(s)	587, 615, 666, 695, 900, 1006
TspRI	CASTG	3 cut(s)	360, 475, 812
VpaK11BI	GGWCC	4 cut(s)	54, 82, 210, 964
XagI	CCTNNNNNAGG	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.