FvH4_5g17500

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009259
Physical Location & Seq
Reverse (-)
10014495 .. 10017616
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17500.t2

Sequence Viewer

Length: 1056 bp
ATGGCAACAACAACAACAACAACCTCCATTGCCAAAACCATAACCAAACTCTACACTTGTAACAGAGGCTCTCTCTCTTCCACTCCCAGTCAATTGGGTTCATTTCAGTCTTCTTCATTGTCAAGCTCCTCTACTGCTGCAGCTTCCTCAGAACCTGAGTTTCAATCAGCAATCTCTTCCCAAGCTCCAGAGAGGGAAAGGTCCAGATGGTCGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACCTTTGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGACAAGATACAAATGCTGGAGTATAGACGGAAAAGGCTGGAGATGGAACCACTGCAATTTAACCATGTTTCTCCATCAACCAAAGAATTGGAGAATTTGGAGTTTAGGAGGGTGTTATGCAAAGGACATTTTGATGAGAAAGGTTCGATCTATGTGGGCCCTCGTTCAAGAAGCATTTCAGGAGTGACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAGTTTCTGACGAAGCTGAGAGTTCACAGCCGCCAATATTGGTCAATAGAGGATGGGTCCCCCGCAGTTGGAAAGAAAAGTCTTCAGAACTTCCACAAGATGATGAACAACCTTCTAACACAACACCCAGTATTGGCAAAGAGGAGGAAAGAGCATCTTGGTGGAGGTTCTGGACAAAGAAGCCTAAAGTTGTTGAGGATCAACCCCCTACACAAGCTCCTGATGAAGTTGTTGGAGTAATTCGAGGGAGTGAAAAGCCTAGCATTTTTGTTCCACCAAATGATCCAAACTCTGGTCAATGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACATTTGGACTTCCTGAGGATACTATTTACATTGAGGACATACATGAAGATGTCAATCCTAGTAATCCGTATCCACTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTGAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACGTTTATGGCTTTCAAGAGACTAAGACCAAAAAAGATACGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

352

Amino Acids

39.7

Weight (kDa)

8.69

Isoelectric Point (pI)

64.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 77 - 200 3e-27 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 797, 923
AciI CCGC 2 cut(s) 536, 568
AclWI GGATC 2 cut(s) 711, 782
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 2 cut(s) 838, 931
AfiI CCNNNNNNNGG 5 cut(s) 573, 638, 797, 923, 939
AgsI TTSAA 3 cut(s) 164, 450, 1024
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 6 cut(s) 126, 143, 185, 239, 521, 722
AluI AGCT 6 cut(s) 126, 143, 185, 239, 521, 722
Alw26I GTCTC 1 cut(s) 1021
AlwI GGATC 2 cut(s) 711, 782
AlwNI CAGNNNCTG 2 cut(s) 155, 512
AoxI GGCC 2 cut(s) 250, 439
ApaI GGGCCC 1 cut(s) 443
ApeKI GCWGC 4 cut(s) 137, 140, 220, 1001
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 457
AspS9I GGNCC 5 cut(s) 201, 439, 440, 562, 961
AvaII GGWCC 3 cut(s) 201, 562, 961
AxyI CCTNAGG 2 cut(s) 852, 957
BaeGI GKGCMC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 102, 579
BbvI GCAGC 4 cut(s) 124, 152, 207, 1013
BccI CCATC 6 cut(s) 201, 319, 364, 552, 917, 972
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 2 cut(s) 850, 918
BcoDI GTCTC 1 cut(s) 1021
BfaI CTAG 2 cut(s) 765, 897
BfmI CTRYAG 2 cut(s) 138, 999
BfuI GTATCC 2 cut(s) 850, 918
BisI GCNGC 5 cut(s) 138, 141, 221, 536, 1002
BlsI GCNGC 5 cut(s) 139, 142, 222, 537, 1003
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 3 cut(s) 201, 562, 961
BmgT120I GGNCC 5 cut(s) 201, 439, 440, 562, 961
BmiI GGNNCC 4 cut(s) 330, 441, 563, 564
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 2 cut(s) 81, 627
BmsI GCATC 1 cut(s) 668
BmuI ACTGGG 2 cut(s) 81, 627
BpiI GAAGAC 2 cut(s) 102, 579
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpmI CTGGAG 4 cut(s) 171, 255, 320, 341
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 5 cut(s) 573, 638, 797, 923, 939
Bse1I ACTGG 3 cut(s) 87, 506, 633
Bse21I CCTNAGG 2 cut(s) 852, 957
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 563
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 5 cut(s) 573, 638, 797, 923, 939
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 5 cut(s) 147, 162, 513, 843, 971
BseNI ACTGG 3 cut(s) 87, 506, 633
BseRI GAGGAG 2 cut(s) 118, 662
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 4 cut(s) 124, 152, 207, 1013
BshFI GGCC 2 cut(s) 252, 441
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 5 cut(s) 573, 638, 797, 923, 939
BsmAI GTCTC 1 cut(s) 1021
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 2 cut(s) 252, 441
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 3 cut(s) 429, 703, 787
BspACI CCGC 2 cut(s) 536, 568
BspANI GGCC 2 cut(s) 252, 441
BspCNI CTCAG 5 cut(s) 148, 161, 514, 844, 970
BspLI GGNNCC 4 cut(s) 330, 441, 563, 564
BspMAI CTGCAG 2 cut(s) 142, 1003
BspPI GGATC 2 cut(s) 711, 782
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 3 cut(s) 87, 506, 633
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 429, 703, 787
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 82, 181
BstDEI CTNAG 6 cut(s) 148, 156, 522, 852, 957, 1031
BstF5I GGATG 1 cut(s) 563
BstKTI GATC 3 cut(s) 432, 706, 790
BstMAI GTCTC 1 cut(s) 1021
BstMBI GATC 3 cut(s) 429, 703, 787
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 138, 999
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 4 cut(s) 124, 152, 207, 1013
BstV2I GAAGAC 2 cut(s) 102, 579
BstXI CCANNNNNNTGG 2 cut(s) 94, 370
Bsu36I CCTNAGG 2 cut(s) 852, 957
BsuI GTATCC 2 cut(s) 850, 918
BsuRI GGCC 2 cut(s) 252, 441
BtsCI GGATG 1 cut(s) 563
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
CaiI CAGNNNCTG 2 cut(s) 155, 512
Cfr13I GGNCC 5 cut(s) 201, 439, 440, 562, 961
Csp6I GTAC 2 cut(s) 837, 930
CviAII CATG 4 cut(s) 347, 881, 952, 984
CviQI GTAC 2 cut(s) 837, 930
DdeI CTNAG 6 cut(s) 148, 156, 522, 852, 957, 1031
DpnI GATC 3 cut(s) 431, 705, 789
DpnII GATC 3 cut(s) 429, 703, 787
Eam1104I CTCTTC 2 cut(s) 82, 181
EarI CTCTTC 2 cut(s) 82, 181
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 3 cut(s) 201, 562, 961
Eco57I CTGAAG 1 cut(s) 573
Eco81I CCTNAGG 2 cut(s) 852, 957
EcoO109I RGGNCCY 2 cut(s) 440, 562
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 350, 884, 955, 987
FalI AAGNNNNNCTT 2 cut(s) 646, 678
FaqI GGGAC 1 cut(s) 548
FatI CATG 4 cut(s) 346, 880, 951, 983
FauI CCCGC 1 cut(s) 575
Fnu4HI GCNGC 5 cut(s) 138, 141, 221, 536, 1002
FokI GGATG 1 cut(s) 570
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 5 cut(s) 138, 141, 221, 536, 1002
FspBI CTAG 2 cut(s) 765, 897
GluI GCNGC 5 cut(s) 138, 141, 221, 536, 1002
GsuI CTGGAG 4 cut(s) 171, 255, 320, 341
HaeIII GGCC 2 cut(s) 252, 441
Hin1II CATG 4 cut(s) 350, 884, 955, 987
HinfI GANTC 1 cut(s) 937
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 6 cut(s) 151, 275, 514, 592, 942, 969
Hpy188III TCNNGA 9 cut(s) 188, 204, 450, 462, 676, 725, 851, 959, 1024
Hpy8I GTNNAC 1 cut(s) 530
HpyAV CCTTC 2 cut(s) 270, 627
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 5 cut(s) 140, 337, 402, 827, 1001
HpyF3I CTNAG 6 cut(s) 148, 156, 522, 852, 957, 1031
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 4 cut(s) 350, 884, 955, 987
KflI GGGWCCC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 429, 703, 787
LmnI GCTCC 4 cut(s) 131, 190, 236, 727
Lsp1109I GCAGC 4 cut(s) 124, 152, 207, 1013
LweI GCATC 1 cut(s) 668
MaeI CTAG 2 cut(s) 765, 897
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 3 cut(s) 59, 466, 1006
MalI GATC 3 cut(s) 431, 705, 789
MboI GATC 3 cut(s) 429, 703, 787
MboII GAAGA 7 cut(s) 69, 102, 105, 168, 221, 579, 896
MfeI CAATTG 2 cut(s) 92, 828
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 7 cut(s) 92, 338, 368, 376, 744, 828, 970
MmeI TCCRAC 2 cut(s) 554, 718
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 3 cut(s) 414, 664, 885
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 2 cut(s) 92, 828
MvaI CCWGG 1 cut(s) 234
NdeII GATC 3 cut(s) 429, 703, 787
NlaIII CATG 4 cut(s) 350, 884, 955, 987
NlaIV GGNNCC 4 cut(s) 330, 441, 563, 564
NmuCI GTSAC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 937
PflMI CCANNNNNTGG 2 cut(s) 797, 923
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 5 cut(s) 139, 142, 222, 537, 1003
PpuMI RGGWCCY 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 4 cut(s) 330, 441, 563, 564
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 5 cut(s) 201, 439, 440, 562, 961
PspPPI RGGWCCY 1 cut(s) 562
PstI CTGCAG 2 cut(s) 142, 1003
PstNI CAGNNNCTG 2 cut(s) 155, 512
RsaI GTAC 2 cut(s) 838, 931
RsaNI GTAC 2 cut(s) 837, 930
RseI CAYNNNNRTG 3 cut(s) 414, 664, 885
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 5 cut(s) 138, 141, 221, 536, 1002
Sau3AI GATC 3 cut(s) 429, 703, 787
Sau96I GGNCC 5 cut(s) 201, 439, 440, 562, 961
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 1 cut(s) 668
SfcI CTRYAG 2 cut(s) 138, 999
SinI GGWCC 3 cut(s) 201, 562, 961
SmiMI CAYNNNNRTG 3 cut(s) 414, 664, 885
Sse9I AATT 7 cut(s) 92, 338, 368, 376, 744, 828, 970
SsiI CCGC 2 cut(s) 536, 568
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 765, 897
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 253
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 3 cut(s) 212, 428, 748
TasI AATT 7 cut(s) 92, 338, 368, 376, 744, 828, 970
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 4 cut(s) 137, 140, 220, 1001
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 5 cut(s) 90, 105, 624, 744, 897
TspGWI ACGGA 2 cut(s) 325, 894
TspRI CASTG 1 cut(s) 339
Van91I CCANNNNNTGG 2 cut(s) 797, 923
VpaK11BI GGWCC 3 cut(s) 201, 562, 961
XapI RAATTY 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 2 cut(s) 765, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.