Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007855.1

Orthogroup ID

OG0009259

Physical Location & Seq

Genomic Coordinates Reverse (-)

46656 .. 49159

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007855.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggcaacaacaaaaacctccattgccaaaaccataaccaagctctatacttgtaatagtaatagtgggtccctctcatccattcccaatcatttgggttcatttcagtcttcttccttgttcagctcctctacttctgcagcctcctcagtagccgagtcccaatcaacagtctcgtcccaagcttcagagagggaaaggtctagatggtcgaaatggctgctgtttcttcctggagctattacttttggccttggaacttggcagattgtcagaaggcaagaaaagataaaaatgctggactatagacggaaaaggttggagatggaacctttgaaattcaacagtgtttctccatcaagtgaagaattggataatttggagtttagaagggtgttatgcaagggacattttgatgagagcaggtcaatctatgtgggccctcgttcaaggagcatatcaggagtaactgaaaatggctactatgtcattacaccccttttgccaatttctgacaaagctgacagttcacagcctccaatattggttaacagaggatgggtcccccgcagttggaaagataagtcttcagaactttcacaagatgatgaacaaccttctaacatagcgccaaccgttgtcaaagaggaggaaagagcatcttggtggaggttctggttaaagaagcctaaagttgttgaggatcacccccctacacgtgctcctgatgaagttgttggagtcatacgagggagtgaaaagcctagtatatttgttccaccaaatgatccaaactctggccagtggttctatgttgatgttcctgcaattgctcgtacttgtggacttcctgaggatagtatttacattgaagacatacatgaagatgtcaatcccagtaacccgtatccacttccaaaagatggcagtaccttgattcggagttcagtcatgcctcaggaccatctaaattatactttgacatggtattctctctctgcagcagttacgtttatggctttcatgagactaagaccaaaaaagatccgcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SURF1

Protein Analysis

351

Amino Acids

39.65

Weight (kDa)

9.09

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17910
fragaria_vesca	FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500 FvH4_5g17500
malus_domestica	MD06G1228400.v1.1 MD14G1237600.v1.1
prunus_persica	Prupe.5G234900_v2.0.a1
pyrus_communis	pycom06g20470
rosa_chinensis	RchiOBHm_Chr7g0178161
rosa_laevigata	RLG00000005466
rosa_multiflora	Rmu_sc0007855.1_g000008
rosa_roxburghii	Rroxscaffold_3G00275120
rosa_rugosa	Rorug06G0413800 Rorug06G0413800
rosa_samantha	Rh7AG013400 Rh7BG013300 Rh7CG013200 Rh7DG013500
rosa_wichuraiana	Rw7G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccB7I	CCANNNNNTGG	2 cut(s)	797, 923
AciI	CCGC	2 cut(s)	568, 1048
AclWI	GGATC	3 cut(s)	711, 782, 1039
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	2 cut(s)	171, 573
AcvI	CACGTG	1 cut(s)	719
AfaI	GTAC	2 cut(s)	838, 931
AfiI	CCNNNNNNNGG	4 cut(s)	573, 797, 923, 939
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	4 cut(s)	337, 343, 450, 872
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	5 cut(s)	43, 126, 185, 239, 521
AluI	AGCT	5 cut(s)	43, 126, 185, 239, 521
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	178, 1021
AlwI	GGATC	3 cut(s)	711, 782, 1039
AoxI	GGCC	3 cut(s)	250, 439, 799
ApaI	GGGCCC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	140, 220, 1001
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	5 cut(s)	69, 439, 440, 562, 961
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	3 cut(s)	69, 562, 961
AxyI	CCTNAGG	2 cut(s)	852, 957
BaeGI	GKGCMC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	801
BanII	GRGCYC	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	719
BbsI	GAAGAC	3 cut(s)	102, 579, 879
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	3 cut(s)	152, 207, 1013
BccI	CCATC	6 cut(s)	201, 319, 364, 552, 917, 972
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	178, 1021
BfaI	CTAG	2 cut(s)	204, 765
BfmI	CTRYAG	3 cut(s)	138, 304, 999
BfoI	RGCGCY	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	918
BisI	GCNGC	3 cut(s)	141, 221, 1002
BlsI	GCNGC	3 cut(s)	142, 222, 1003
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	3 cut(s)	69, 562, 961
BmgT120I	GGNCC	5 cut(s)	69, 439, 440, 562, 961
BmiI	GGNNCC	6 cut(s)	70, 71, 330, 441, 563, 564
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	891
BpiI	GAAGAC	3 cut(s)	102, 579, 879
BpmI	CTGGAG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	4 cut(s)	573, 797, 923, 939
Bse1I	ACTGG	2 cut(s)	802, 897
Bse21I	CCTNAGG	2 cut(s)	852, 957
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	77, 563
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	4 cut(s)	573, 797, 923, 939
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	3 cut(s)	162, 843, 971
BseNI	ACTGG	2 cut(s)	802, 897
BseRI	GAGGAG	3 cut(s)	118, 136, 662
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	152, 207, 1013
BshFI	GGCC	3 cut(s)	252, 441, 801
BsiHKAI	GWGCWC	1 cut(s)	724
BslFI	GGGAC	5 cut(s)	55, 145, 163, 420, 548
BslI	CCNNNNNNNGG	4 cut(s)	573, 797, 923, 939
BsmAI	GTCTC	2 cut(s)	178, 1021
BsmFI	GGGAC	5 cut(s)	55, 145, 163, 420, 548
BsnI	GGCC	3 cut(s)	252, 441, 801
Bsp120I	GGGCCC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	443, 724
Bsp143I	GATC	3 cut(s)	703, 787, 1044
BspACI	CCGC	2 cut(s)	568, 1048
BspANI	GGCC	3 cut(s)	252, 441, 801
BspCNI	CTCAG	3 cut(s)	161, 844, 970
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	6 cut(s)	70, 71, 330, 441, 563, 564
BspMAI	CTGCAG	2 cut(s)	142, 1003
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	3 cut(s)	711, 782, 1039
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	802, 897
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	703, 787, 1044
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	172, 347, 527, 637
BstBAI	YACGTR	1 cut(s)	719
BstDEI	CTNAG	4 cut(s)	148, 852, 957, 1031
BstF5I	GGATG	2 cut(s)	77, 563
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	3 cut(s)	706, 790, 1047
BstMAI	GTCTC	2 cut(s)	178, 1021
BstMBI	GATC	3 cut(s)	703, 787, 1044
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	3 cut(s)	138, 304, 999
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	152, 207, 1013
BstV2I	GAAGAC	3 cut(s)	102, 579, 879
BstX2I	RGATCY	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	1044
Bsu36I	CCTNAGG	2 cut(s)	852, 957
BsuI	GTATCC	1 cut(s)	918
BsuRI	GGCC	3 cut(s)	252, 441, 801
BtsCI	GGATG	2 cut(s)	77, 563
BtsIMutI	CAGTG	2 cut(s)	352, 809
BveI	ACCTGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	5 cut(s)	69, 439, 440, 562, 961
Csp6I	GTAC	2 cut(s)	837, 930
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	4 cut(s)	881, 952, 984, 1024
CviQI	GTAC	2 cut(s)	837, 930
DdeI	CTNAG	4 cut(s)	148, 852, 957, 1031
DpnI	GATC	3 cut(s)	705, 789, 1046
DpnII	GATC	3 cut(s)	703, 787, 1044
EaeI	YGGCCR	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	443
Eco47I	GGWCC	3 cut(s)	69, 562, 961
Eco57I	CTGAAG	2 cut(s)	171, 573
Eco72I	CACGTG	1 cut(s)	719
Eco81I	CCTNAGG	2 cut(s)	852, 957
EcoO109I	RGGNCCY	3 cut(s)	69, 440, 562
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	4 cut(s)	884, 955, 987, 1027
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FaqI	GGGAC	5 cut(s)	55, 145, 163, 420, 548
FatI	CATG	4 cut(s)	880, 951, 983, 1023
FauI	CCCGC	1 cut(s)	575
Fnu4HI	GCNGC	3 cut(s)	141, 221, 1002
FokI	GGATG	2 cut(s)	64, 570
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	141, 221, 1002
FspBI	CTAG	2 cut(s)	204, 765
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	3 cut(s)	141, 221, 1002
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	3 cut(s)	252, 441, 801
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	4 cut(s)	884, 955, 987, 1027
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	158, 741, 937
HpaI	GTTAAC	1 cut(s)	550
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	3 cut(s)	530, 550, 845
Hpy188I	TCNGA	5 cut(s)	190, 275, 514, 592, 942
Hpy188III	TCNNGA	6 cut(s)	204, 462, 725, 851, 959, 1024
Hpy8I	GTNNAC	3 cut(s)	530, 550, 845
HpyAV	CCTTC	3 cut(s)	270, 384, 627
HpyCH4III	ACNGT	4 cut(s)	172, 347, 527, 637
HpyCH4IV	ACGT	2 cut(s)	718, 1010
HpyCH4V	TGCA	4 cut(s)	140, 402, 827, 1001
HpyF3I	CTNAG	4 cut(s)	148, 852, 957, 1031
HpySE526I	ACGT	2 cut(s)	718, 1010
Hsp92II	CATG	4 cut(s)	884, 955, 987, 1027
HspAI	GCGC	1 cut(s)	629
KflI	GGGWCCC	2 cut(s)	69, 562
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	703, 787, 1044
LmnI	GCTCC	4 cut(s)	131, 236, 453, 727
Lsp1109I	GCAGC	3 cut(s)	152, 207, 1013
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	204, 765
MaeII	ACGT	2 cut(s)	718, 1010
MaeIII	GTNAC	3 cut(s)	466, 899, 1006
MalI	GATC	3 cut(s)	705, 789, 1046
MboI	GATC	3 cut(s)	703, 787, 1044
MboII	GAAGA	7 cut(s)	102, 105, 221, 377, 579, 884, 896
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	1 cut(s)	1044
MhlI	GDGCHC	2 cut(s)	443, 724
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	6 cut(s)	338, 368, 376, 507, 828, 970
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	167, 750
MmeI	TCCRAC	3 cut(s)	300, 554, 718
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	2 cut(s)	549, 680
MslI	CAYNNNNRTG	3 cut(s)	414, 664, 885
Msp20I	TGGCCA	1 cut(s)	801
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	703, 787, 1044
NlaIII	CATG	4 cut(s)	884, 955, 987, 1027
NlaIV	GGNNCC	6 cut(s)	70, 71, 330, 441, 563, 564
NmeAIII	GCCGAG	1 cut(s)	181
PagI	TCATGA	1 cut(s)	1023
PfeI	GAWTC	1 cut(s)	937
PflMI	CCANNNNNTGG	2 cut(s)	797, 923
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	142, 222, 1003
PleI	GAGTC	2 cut(s)	166, 749
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
PpsI	GAGTC	2 cut(s)	166, 749
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	2 cut(s)	69, 562
Psp5II	RGGWCCY	2 cut(s)	69, 562
Psp6I	CCWGG	1 cut(s)	232
PspCI	CACGTG	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	6 cut(s)	70, 71, 330, 441, 563, 564
PspOMI	GGGCCC	1 cut(s)	439
PspPI	GGNCC	5 cut(s)	69, 439, 440, 562, 961
PspPPI	RGGWCCY	2 cut(s)	69, 562
PstI	CTGCAG	2 cut(s)	142, 1003
PsuI	RGATCY	1 cut(s)	1044
RsaI	GTAC	2 cut(s)	838, 931
RsaNI	GTAC	2 cut(s)	837, 930
RseI	CAYNNNNRTG	3 cut(s)	414, 664, 885
SaqAI	TTAA	2 cut(s)	549, 680
SatI	GCNGC	3 cut(s)	141, 221, 1002
Sau3AI	GATC	3 cut(s)	703, 787, 1044
Sau96I	GGNCC	5 cut(s)	69, 439, 440, 562, 961
SchI	GAGTC	2 cut(s)	167, 750
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	443, 724
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	3 cut(s)	138, 304, 999
SinI	GGWCC	3 cut(s)	69, 562, 961
SmiMI	CAYNNNNRTG	3 cut(s)	414, 664, 885
Sse9I	AATT	6 cut(s)	338, 368, 376, 507, 828, 970
SsiI	CCGC	2 cut(s)	568, 1048
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	2 cut(s)	204, 765
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	172, 347, 527, 637
TaiI	ACGT	2 cut(s)	721, 1013
TaqI	TCGA	1 cut(s)	212
TasI	AATT	6 cut(s)	338, 368, 376, 507, 828, 970
TfiI	GAWTC	1 cut(s)	937
Tru1I	TTAA	2 cut(s)	549, 680
Tru9I	TTAA	2 cut(s)	549, 680
TscAI	CASTG	2 cut(s)	352, 809
TseI	GCWGC	3 cut(s)	140, 220, 1001
TspDTI	ATGAA	5 cut(s)	90, 624, 744, 897, 1012
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	352, 809
Van91I	CCANNNNNTGG	2 cut(s)	797, 923
VpaK11BI	GGWCC	3 cut(s)	69, 562, 961
XapI	RAATTY	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	2 cut(s)	204, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.