Rh7AG013400

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009259
Physical Location & Seq
Forward (+)
881402 .. 885876
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG013400.1

Sequence Viewer

Length: 1020 bp
ATGGCAACAACAAAAACCTCCATTGCCAAAACCATAACCAAGCTCTATACTTGTAATAGTAATAGTGGGTCCCTCTCATCCATTCCCAATCATTTGGGTTCATTTCAGTCTTCTTCCTTGTTCAGCTCCTCTACTTCTGCAGCCTCCTCAGTAGCCGAGTCCCAATCAACAGTCTCGTCCCAAGCTTCAGAGAGGGAAAGGTCTAGATGGTCGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACTTTTGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGAAAAGATAAAAATGCTGGACTATAGACGGAAAAGGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAAGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGTCCTCGTTCAAGAAGCATATCAGGAGTAACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTCACAGCCTCCAATATTGGTCAACAGAGGATGGGTCCCCCGCAGTTGGAAAGATAAGTCTTCAGAACTTTCACAAGATGATGAACAACCTTCTACCATAACGCCAACCATTGTCAAAGAGGAGGAAAGAGCCTCCTGGTGGAGGTTCTGGTTAAAGAAGCCTAAAGTTGTTGAGGATCACCCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCGCCAAATGATCCAAACTCTGGCCAGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCCAGTAACCCGTATCCACTTCCAAAAGATGGCAGTACCTTGAATCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATCTTTTGCACCTTGCATTGTCATATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

339

Amino Acids

38.27

Weight (kDa)

7.02

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 77 - 332 2e-43 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 2 cut(s) 797, 923
AciI CCGC 2 cut(s) 568, 779
AclWI GGATC 2 cut(s) 711, 782
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 171, 573
AcvI CACGTG 1 cut(s) 719
AfaI GTAC 2 cut(s) 838, 931
AfiI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 5 cut(s) 337, 343, 450, 872, 937
AjnI CCWGG 2 cut(s) 232, 662
AluBI AGCT 5 cut(s) 43, 126, 185, 239, 521
AluI AGCT 5 cut(s) 43, 126, 185, 239, 521
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 711, 782
AoxI GGCC 2 cut(s) 250, 799
ApeKI GCWGC 2 cut(s) 140, 220
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 69, 440, 562, 961
AsuHPI GGTGA 1 cut(s) 698
AvaII GGWCC 4 cut(s) 69, 440, 562, 961
AxyI CCTNAGG 2 cut(s) 852, 957
BalI TGGCCA 1 cut(s) 801
BbrPI CACGTG 1 cut(s) 719
BbsI GAAGAC 3 cut(s) 102, 579, 879
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 152, 207
BccI CCATC 6 cut(s) 201, 319, 364, 552, 917, 972
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 2 cut(s) 234, 664
BciVI GTATCC 2 cut(s) 850, 918
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 204, 765
BfmI CTRYAG 2 cut(s) 138, 304
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 2 cut(s) 850, 918
BisI GCNGC 2 cut(s) 141, 221
BlsI GCNGC 2 cut(s) 142, 222
Bme1390I CCNGG 2 cut(s) 234, 664
Bme18I GGWCC 4 cut(s) 69, 440, 562, 961
BmgT120I GGNCC 4 cut(s) 69, 440, 562, 961
BmiI GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
BmrFI CCNGG 2 cut(s) 234, 664
BmrI ACTGGG 1 cut(s) 891
BmuI ACTGGG 1 cut(s) 891
BpiI GAAGAC 3 cut(s) 102, 579, 879
BpmI CTGGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
Bse1I ACTGG 2 cut(s) 802, 897
Bse21I CCTNAGG 2 cut(s) 852, 957
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 2 cut(s) 234, 664
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 77, 563
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 162, 513, 843, 971
BseNI ACTGG 2 cut(s) 802, 897
BseRI GAGGAG 3 cut(s) 118, 136, 662
BseXI GCAGC 2 cut(s) 152, 207
BshFI GGCC 2 cut(s) 252, 801
BsiHKAI GWGCWC 1 cut(s) 724
BslFI GGGAC 5 cut(s) 55, 145, 163, 420, 548
BslI CCNNNNNNNGG 6 cut(s) 573, 666, 669, 797, 923, 939
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 5 cut(s) 55, 145, 163, 420, 548
BsnI GGCC 2 cut(s) 252, 801
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 2 cut(s) 703, 787
BspACI CCGC 2 cut(s) 568, 779
BspANI GGCC 2 cut(s) 252, 801
BspCNI CTCAG 4 cut(s) 161, 514, 844, 970
BspLI GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 2 cut(s) 711, 782
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 2 cut(s) 802, 897
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 703, 787
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 2 cut(s) 234, 664
Bst4CI ACNGT 2 cut(s) 172, 347
BstBAI YACGTR 1 cut(s) 719
BstDEI CTNAG 4 cut(s) 148, 522, 852, 957
BstENI CCTNNNNNAGG 1 cut(s) 667
BstF5I GGATG 2 cut(s) 77, 563
BstKTI GATC 2 cut(s) 706, 790
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 703, 787
BstNI CCWGG 2 cut(s) 234, 664
BstSCI CCNGG 2 cut(s) 232, 662
BstSFI CTRYAG 2 cut(s) 138, 304
BstV1I GCAGC 2 cut(s) 152, 207
BstV2I GAAGAC 3 cut(s) 102, 579, 879
BstXI CCANNNNNNTGG 1 cut(s) 94
Bsu36I CCTNAGG 2 cut(s) 852, 957
BsuI GTATCC 2 cut(s) 850, 918
BsuRI GGCC 2 cut(s) 252, 801
BtsCI GGATG 2 cut(s) 77, 563
BtsIMutI CAGTG 2 cut(s) 352, 809
BveI ACCTGC 1 cut(s) 414
Cfr13I GGNCC 4 cut(s) 69, 440, 562, 961
Csp6I GTAC 2 cut(s) 837, 930
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 3 cut(s) 881, 952, 984
CviQI GTAC 2 cut(s) 837, 930
DdeI CTNAG 4 cut(s) 148, 522, 852, 957
DpnI GATC 2 cut(s) 705, 789
DpnII GATC 2 cut(s) 703, 787
EaeI YGGCCR 1 cut(s) 799
EciI GGCGGA 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 4 cut(s) 69, 440, 562, 961
Eco57I CTGAAG 2 cut(s) 171, 573
Eco72I CACGTG 1 cut(s) 719
Eco81I CCTNAGG 2 cut(s) 852, 957
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoO109I RGGNCCY 3 cut(s) 69, 440, 562
EcoRII CCWGG 2 cut(s) 232, 662
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 3 cut(s) 884, 955, 987
FaqI GGGAC 5 cut(s) 55, 145, 163, 420, 548
FatI CATG 3 cut(s) 880, 951, 983
FauI CCCGC 1 cut(s) 575
Fnu4HI GCNGC 2 cut(s) 141, 221
FokI GGATG 2 cut(s) 64, 570
Fsp4HI GCNGC 2 cut(s) 141, 221
FspBI CTAG 2 cut(s) 204, 765
GluI GCNGC 2 cut(s) 141, 221
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 252, 801
Hin1II CATG 3 cut(s) 884, 955, 987
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 2 cut(s) 158, 937
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 3 cut(s) 530, 550, 845
Hpy188I TCNGA 5 cut(s) 190, 275, 514, 592, 942
Hpy188III TCNNGA 6 cut(s) 204, 450, 462, 725, 851, 959
Hpy8I GTNNAC 3 cut(s) 530, 550, 845
HpyAV CCTTC 3 cut(s) 270, 384, 627
HpyCH4III ACNGT 2 cut(s) 172, 347
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 5 cut(s) 140, 402, 827, 997, 1004
HpyF3I CTNAG 4 cut(s) 148, 522, 852, 957
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 3 cut(s) 884, 955, 987
KflI GGGWCCC 2 cut(s) 69, 562
Kzo9I GATC 2 cut(s) 703, 787
LmnI GCTCC 3 cut(s) 131, 236, 727
Lsp1109I GCAGC 2 cut(s) 152, 207
MaeI CTAG 2 cut(s) 204, 765
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 2 cut(s) 466, 899
MalI GATC 2 cut(s) 705, 789
MboI GATC 2 cut(s) 703, 787
MboII GAAGA 7 cut(s) 102, 105, 221, 377, 579, 884, 896
MfeI CAATTG 1 cut(s) 828
MhlI GDGCHC 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 6 cut(s) 338, 368, 376, 507, 828, 970
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 300, 554, 718
Mox20I TGGCCA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 801
MseI TTAA 2 cut(s) 680, 1018
MslI CAYNNNNRTG 2 cut(s) 414, 885
Msp20I TGGCCA 1 cut(s) 801
MspR9I CCNGG 2 cut(s) 234, 664
MunI CAATTG 1 cut(s) 828
MvaI CCWGG 2 cut(s) 234, 664
NdeII GATC 2 cut(s) 703, 787
NlaIII CATG 3 cut(s) 884, 955, 987
NlaIV GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
NmeAIII GCCGAG 1 cut(s) 181
PfeI GAWTC 1 cut(s) 937
PflMI CCANNNNNTGG 2 cut(s) 797, 923
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 2 cut(s) 142, 222
PleI GAGTC 1 cut(s) 166
PmaCI CACGTG 1 cut(s) 719
PmlI CACGTG 1 cut(s) 719
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 719
PpuMI RGGWCCY 3 cut(s) 69, 440, 562
Psp5II RGGWCCY 3 cut(s) 69, 440, 562
Psp6I CCWGG 2 cut(s) 232, 662
PspCI CACGTG 1 cut(s) 719
PspGI CCWGG 2 cut(s) 232, 662
PspN4I GGNNCC 6 cut(s) 70, 71, 330, 441, 563, 564
PspPI GGNCC 4 cut(s) 69, 440, 562, 961
PspPPI RGGWCCY 3 cut(s) 69, 440, 562
PstI CTGCAG 1 cut(s) 142
RsaI GTAC 2 cut(s) 838, 931
RsaNI GTAC 2 cut(s) 837, 930
RseI CAYNNNNRTG 2 cut(s) 414, 885
SaqAI TTAA 2 cut(s) 680, 1018
SatI GCNGC 2 cut(s) 141, 221
Sau3AI GATC 2 cut(s) 703, 787
Sau96I GGNCC 4 cut(s) 69, 440, 562, 961
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 234, 664
SduI GDGCHC 1 cut(s) 724
SfcI CTRYAG 2 cut(s) 138, 304
SinI GGWCC 4 cut(s) 69, 440, 562, 961
SmiMI CAYNNNNRTG 2 cut(s) 414, 885
Sse9I AATT 6 cut(s) 338, 368, 376, 507, 828, 970
SsiI CCGC 2 cut(s) 568, 779
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 204, 765
StyD4I CCNGG 2 cut(s) 232, 662
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 172, 347
TaiI ACGT 1 cut(s) 721
TaqI TCGA 1 cut(s) 212
TasI AATT 6 cut(s) 338, 368, 376, 507, 828, 970
TfiI GAWTC 1 cut(s) 937
Tru1I TTAA 2 cut(s) 680, 1018
Tru9I TTAA 2 cut(s) 680, 1018
TscAI CASTG 2 cut(s) 352, 809
TseI GCWGC 2 cut(s) 140, 220
TspDTI ATGAA 4 cut(s) 90, 624, 744, 897
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 352, 809
Van91I CCANNNNNTGG 2 cut(s) 797, 923
VpaK11BI GGWCC 4 cut(s) 69, 440, 562, 961
XagI CCTNNNNNAGG 1 cut(s) 667
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 2 cut(s) 204, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.