Rroxscaffold_3G00275120

Probably involved in the biogenesis of the COX complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009259
Physical Location & Seq
Reverse (-)
66668272 .. 66671404
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275120.1

Sequence Viewer

Length: 957 bp
ATGGCAACAACAAAAACATCCATTGCCAAAGCCATAACCAAGCTCTGTACTTGTAATAGTAATAGTGGGTCCCTGTCTTCCATTCCCAATCGTTTGGGTTCATTTCAATCTTCTTCCTTGTTCAGCTCCTCTACTTCTGCAGCTTCCTCAGTAGCCGAGTCTCAATCAACGGTCTCGTCCCAAGCTTCAGAGAGGGAAAGGTCTAGATGGTTGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACTTTCGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGAAAAGATAAAAATGCTAGACTATAGACGGAAAAGGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAGGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATATCAGGAGTAACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTTTGCGGTGGTAGAAATTACAAAAATTGAATCTAACACTACATTTGTGCAATTTACAGGATCACCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCACCAAATGATCCAAACTCTGGCCAGTGGTTCTATGTTGATGTTCCTGAAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCCAGTAACCCGTATCCGCTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACGTTTATGGCTTTCATGAGACTAAGACCAAAAAGATCCGCAGATAGCAGAGACTCCATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF1

Protein Analysis

318

Amino Acids

35.41

Weight (kDa)

7.64

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF1 PF02104 77 - 295 6.4e-35 SURF1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 2 cut(s) 680, 806
AciI CCGC 3 cut(s) 533, 794, 930
AclWI GGATC 3 cut(s) 595, 665, 921
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 602
AfaI GTAC 3 cut(s) 49, 721, 814
AfiI CCNNNNNNNGG 3 cut(s) 680, 806, 822
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 7 cut(s) 107, 214, 337, 343, 450, 557, 755
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 6 cut(s) 43, 126, 143, 185, 239, 521
AluI AGCT 6 cut(s) 43, 126, 143, 185, 239, 521
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 4 cut(s) 165, 178, 904, 936
AlwI GGATC 3 cut(s) 595, 665, 921
AoxI GGCC 3 cut(s) 250, 439, 682
ApaI GGGCCC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 140, 220, 884
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 69, 439, 440, 844
AsuHPI GGTGA 2 cut(s) 374, 582
AvaII GGWCC 2 cut(s) 69, 844
AxyI CCTNAGG 2 cut(s) 735, 840
BaeGI GKGCMC 1 cut(s) 443
BalI TGGCCA 1 cut(s) 684
BanII GRGCYC 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 602
BbsI GAAGAC 2 cut(s) 69, 762
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 3 cut(s) 152, 207, 896
BccI CCATC 5 cut(s) 201, 319, 364, 800, 855
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 2 cut(s) 733, 801
BcoDI GTCTC 4 cut(s) 165, 178, 904, 936
BfaI CTAG 3 cut(s) 204, 299, 648
BfmI CTRYAG 3 cut(s) 138, 304, 882
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 2 cut(s) 733, 801
BisI GCNGC 3 cut(s) 141, 221, 885
BlsI GCNGC 3 cut(s) 142, 222, 886
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 69, 844
BmgT120I GGNCC 4 cut(s) 69, 439, 440, 844
BmiI GGNNCC 4 cut(s) 70, 71, 330, 441
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 774
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 2 cut(s) 69, 762
BpmI CTGGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 774
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 3 cut(s) 680, 806, 822
Bse1I ACTGG 2 cut(s) 685, 780
Bse21I CCTNAGG 2 cut(s) 735, 840
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 680, 806, 822
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 162, 513, 726, 854
BseNI ACTGG 2 cut(s) 685, 780
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 3 cut(s) 152, 207, 896
BshFI GGCC 3 cut(s) 252, 441, 684
BsiHKAI GWGCWC 1 cut(s) 607
BslFI GGGAC 3 cut(s) 55, 163, 420
BslI CCNNNNNNNGG 3 cut(s) 680, 806, 822
BsmAI GTCTC 4 cut(s) 165, 178, 904, 936
BsmFI GGGAC 3 cut(s) 55, 163, 420
BsnI GGCC 3 cut(s) 252, 441, 684
Bso31I GGTCTC 1 cut(s) 178
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 443, 607
Bsp143I GATC 3 cut(s) 587, 670, 926
BspACI CCGC 3 cut(s) 533, 794, 930
BspANI GGCC 3 cut(s) 252, 441, 684
BspCNI CTCAG 4 cut(s) 161, 514, 727, 853
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 4 cut(s) 70, 71, 330, 441
BspMAI CTGCAG 2 cut(s) 142, 886
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 3 cut(s) 595, 665, 921
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 2 cut(s) 685, 780
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 587, 670, 926
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 172, 347
BstBAI YACGTR 1 cut(s) 602
BstDEI CTNAG 5 cut(s) 148, 522, 735, 840, 914
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 3 cut(s) 590, 673, 929
BstMAI GTCTC 4 cut(s) 165, 178, 904, 936
BstMBI GATC 3 cut(s) 587, 670, 926
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 3 cut(s) 138, 304, 882
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 3 cut(s) 152, 207, 896
BstV2I GAAGAC 2 cut(s) 69, 762
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 926
Bsu36I CCTNAGG 2 cut(s) 735, 840
BsuI GTATCC 2 cut(s) 733, 801
BsuRI GGCC 3 cut(s) 252, 441, 684
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 352, 692
BveI ACCTGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 906
Cfr13I GGNCC 4 cut(s) 69, 439, 440, 844
Csp6I GTAC 3 cut(s) 48, 720, 813
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 4 cut(s) 764, 835, 867, 907
CviQI GTAC 3 cut(s) 48, 720, 813
DdeI CTNAG 5 cut(s) 148, 522, 735, 840, 914
DpnI GATC 3 cut(s) 589, 672, 928
DpnII GATC 3 cut(s) 587, 670, 926
EaeI YGGCCR 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 69, 844
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 602
Eco81I CCTNAGG 2 cut(s) 735, 840
EcoO109I RGGNCCY 2 cut(s) 69, 440
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 767, 838, 870, 910
FaqI GGGAC 3 cut(s) 55, 163, 420
FatI CATG 4 cut(s) 763, 834, 866, 906
Fnu4HI GCNGC 3 cut(s) 141, 221, 885
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 141, 221, 885
FspBI CTAG 3 cut(s) 204, 299, 648
GluI GCNGC 3 cut(s) 141, 221, 885
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 3 cut(s) 252, 441, 684
Hin1II CATG 4 cut(s) 767, 838, 870, 910
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 4 cut(s) 158, 557, 820, 944
HphI GGTGA 2 cut(s) 374, 582
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 4 cut(s) 190, 275, 514, 825
Hpy188III TCNNGA 8 cut(s) 204, 450, 462, 608, 707, 734, 842, 907
Hpy8I GTNNAC 1 cut(s) 728
HpyAV CCTTC 2 cut(s) 270, 384
HpyCH4III ACNGT 2 cut(s) 172, 347
HpyCH4IV ACGT 2 cut(s) 601, 893
HpyCH4V TGCA 4 cut(s) 140, 402, 577, 884
HpyF3I CTNAG 5 cut(s) 148, 522, 735, 840, 914
HpySE526I ACGT 2 cut(s) 601, 893
Hsp92II CATG 4 cut(s) 767, 838, 870, 910
KflI GGGWCCC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 587, 670, 926
LmnI GCTCC 3 cut(s) 131, 236, 610
Lsp1109I GCAGC 3 cut(s) 152, 207, 896
MaeI CTAG 3 cut(s) 204, 299, 648
MaeII ACGT 2 cut(s) 601, 893
MaeIII GTNAC 3 cut(s) 466, 782, 889
MalI GATC 3 cut(s) 589, 672, 928
MboI GATC 3 cut(s) 587, 670, 926
MboII GAAGA 7 cut(s) 69, 102, 105, 221, 377, 767, 779
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 2 cut(s) 443, 607
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 9 cut(s) 338, 368, 376, 507, 543, 552, 578, 711, 853
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 2 cut(s) 167, 938
MmeI TCCRAC 2 cut(s) 300, 601
MnlI CCTC 7 cut(s) 139, 157, 186, 453, 626, 730, 849
Mox20I TGGCCA 1 cut(s) 684
MscI TGGCCA 1 cut(s) 684
MslI CAYNNNNRTG 2 cut(s) 414, 768
Msp20I TGGCCA 1 cut(s) 684
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 3 cut(s) 587, 670, 926
NlaIII CATG 4 cut(s) 767, 838, 870, 910
NlaIV GGNNCC 4 cut(s) 70, 71, 330, 441
NmeAIII GCCGAG 1 cut(s) 181
PagI TCATGA 1 cut(s) 906
PfeI GAWTC 2 cut(s) 557, 820
PflMI CCANNNNNTGG 2 cut(s) 680, 806
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 142, 222, 886
PleI GAGTC 2 cut(s) 166, 938
PmaCI CACGTG 1 cut(s) 602
PmlI CACGTG 1 cut(s) 602
PpsI GAGTC 2 cut(s) 166, 938
Ppu21I YACGTR 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 232
PspCI CACGTG 1 cut(s) 602
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 4 cut(s) 70, 71, 330, 441
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 4 cut(s) 69, 439, 440, 844
PspPPI RGGWCCY 1 cut(s) 69
PstI CTGCAG 2 cut(s) 142, 886
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 3 cut(s) 49, 721, 814
RsaNI GTAC 3 cut(s) 48, 720, 813
RseI CAYNNNNRTG 2 cut(s) 414, 768
SatI GCNGC 3 cut(s) 141, 221, 885
Sau3AI GATC 3 cut(s) 587, 670, 926
Sau96I GGNCC 4 cut(s) 69, 439, 440, 844
SchI GAGTC 2 cut(s) 167, 938
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 443, 607
SfcI CTRYAG 3 cut(s) 138, 304, 882
SinI GGWCC 2 cut(s) 69, 844
SmiMI CAYNNNNRTG 2 cut(s) 414, 768
Sse9I AATT 9 cut(s) 338, 368, 376, 507, 543, 552, 578, 711, 853
SsiI CCGC 3 cut(s) 533, 794, 930
SspMI CTAG 3 cut(s) 204, 299, 648
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 172, 347
TaiI ACGT 2 cut(s) 604, 896
TasI AATT 9 cut(s) 338, 368, 376, 507, 543, 552, 578, 711, 853
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 557, 820
TscAI CASTG 2 cut(s) 352, 692
TseI GCWGC 3 cut(s) 140, 220, 884
TspDTI ATGAA 4 cut(s) 90, 627, 780, 895
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 352, 692
Van91I CCANNNNNTGG 2 cut(s) 680, 806
VpaK11BI GGWCC 2 cut(s) 69, 844
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 3 cut(s) 204, 299, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.