Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

6204429 .. 6209801

Gene Structure 5373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4323 bp

ATGGCGGTTTCTGCAGGGGCTTTAGCTTTTCCTGCTTTATCCGTTCGCGCCACTCTTAATCCTGAGATTAAAGATGAACAAGCGAACATCAGCAGCACTACTTCTTCTTCCCAGAAATTCACTTACAGTCGAGCTTCTCCCGCCGTCCGATGGCCACATTTGAATCTCCGTGAGATTTATGATTCCACACCTTCACAAACTCTTTCTTCTCCGGTTTCTCCCATCGCCGGTACACCGGATTCAGGTGATGTCGTCGATTCAATTGCCTCCCGCGAGGAGCAAAAGACGAAAGATGAAACCGCCGTGGCGACTCGGAGAAGGAGAGTGAAGAAGATGAATAAAGTGGCGTTGATTAAGGCTAAAGACTGGAGAGAGAGAGTCAAATTTCTGACGGATAAGATTCTAAGCTTGAAATCTAATCAGTTCGTTGCTGATATTCTCGATGCTCGTCTTGTTCAGATGACTCCTACTGATTACTGCTTCGTCGTGAAATCAGTTGGTCAAGAGAGTTGGCAACGAGCTCTTGAGGTTTTTGAGTGGCTCAATCTCCGTCATTGGCACTCTCCTAACGCTCGGATGGTGGCTGCTATACTCGGTGTTTTGGGACGGTGGAATCAGGAATCCCTTGCGGTGGAGATTTTCACTAGGGCTGAGCCAACCGTCGGAGATAGGGTTCAGGTGTACAACGCAATGATGGGGGTTTATTCACGTAGTGGTAAGTTTTCGAAAGCACAAGAGCTGGTCGATGCAATGCGTCAGAGAGGGTGTGTTCCAGATCTTATTAGTTTCAATACTCTTATCAACGCTAGGCTTAAATCTGGTGGGTTGACTCCGAATTTGGCTGTTGAGTTATTAGATATGGTGAGGAATTCGGGTCTTAGGCCTGATGCTATCACTTACAACACTCTTCTTAGTGCCTGTTCGCGGGATTCGAATTTGGATGGTGCAGTGAAGGTTTTTGAGGATATGGAAGCTCATCGGTGTCAGCCTGATTTGTGGACTTATAATGCTATGATTTCTGTTTATGGAAGATGTGGGCTTGCTGCTGAAGCTGAGAGGCTCTTCATGGAGCTGGAGCTTAAAGGTTTTTTCCCTGATGCAGTGACATACAACTCTTTGCTGTATGCGTTTGCCAGAGAAAGAAATACGGAGAAGGTGAAGGAGGTGTACCAACAGATGCAGAAAATGGGGTTTGGGAAAGATGAGATGACATACAACACGATCATTCACATGTATGGCAAGCAGGGACAACTTGATCTTGCGCTACAGCTTTATAAGGACATGAAAGGTTTGTCGGGTAGGAACCCTGATGCTATTACTTACACTGTTTTGATCGATTCTCTTGGAAAAGCAAACCGAACAGTGGAAGCCGCAGCTTTAATGTCTGAGATGCTTGATGTTGGGATCAAACCAACTCTGCAGACATACAGTGCTCTTATCTGTGGTTATGCCAAGGCTGGAAAGCGAGAGGAGGCTGAGGATACTTTCAGTTGCATGTTGCGCTCAGGCACTAAACCTGATAATTTAGCGTATTCTGTAATGTTGGATGTATTACTAAGAGGCAACGAGACAAGAAAGGCCTGGGGTTTATACCGTGATATGATTTCTGATGGTCATACACCGTCTTACACTCTGTATGAGTTGATGATACTTGGACTTATGAAGGAAAACAGGTCAGATGACATTCAGAAAACCATCAGAGACATGGAAGAATTGTGTGGCATGAACCCACTAGAGATTTCATCAGTGCTTGTTAAGGGCGAATGCTTTGATCTCGCTGCTAGACAGTTGAAAGTGGCTATCACCAATGGCTATGAATTGGAAAACGACACTCTATTGTCTATCCTGGGTTCCTATAGTTCATCAGGCAGGCATTCAGAAGCGTTTGAGTTACTTGAATTTTTGAAAGAGCATGCCAGTGGATCTAAAAGACTTATAACTGAAGCTCTAATTGTTCTACATTGCAAGGTGAACAACTTAAGCGCTGCTCTAGATGAATATTTCGCTGACCCATGTGTTCATGGCTGGTGTTTTGGCAGTTCCACCATGTATGAGACTCTATTACACTGCTGTGTAGCAAATGAACATTATGCTGAAGCTTCTCAGGTTTTCTCTGACCTGAGACTATCTGGCTGCGAAGCTTCAGAAAGTGTTTGTAAAAGCATGGTTGTTGTGTATTGCAAGCTTGGCTTTCCAGAGACAGCTCATCAAGTGGTTAATCAGGCTGAGACAAAAGGCTTCCACTTTGCTTGTTCGCCTATGTATACTGATATCATTGAGGCTTATGGAAAACAAAAACTATGGCAGAAAGCGGAGAGTGTGGTTGGCAACCTAAGACAAAGTGGACGAACACCTGATCTGAAGACATGGAACAGCTTGATGTCGGCTTATGCTCAGTGTGGCTGTTACGAGCGGGCAAGGGCTATTTTTAACACTATGATGAGGGATGGTCCGTCTCCTACTGTTGAATCCATCAATATTTTGTTGCATGCTTTGTGTGTTGATGGGAGACTCGAGGAGCTCTACGTTGTTGTTGAAGAATTGCAAGATATGGGCTTTAAGATTAGCAAAAGCTCCATTCTCTTGATGCTTGACGCATTTGCCCGAGCTGGAAATATCTTTGAGGTAAAGAAGATATACAGTAGCATGAAAGCTGCTGGTTACTTACCCACAATCCGCCTTTATAGGATGATGATTGAGCTTCTCTGCAAAGGGAAACGAGTTAGAGATGCTGAAATTATGGTCTCTGAAATGGAAGAGGCCAATTTCAAGGTTGAGCTTGCTATATGGAATTCCATGCTGAAGATGTATACGGCTATCGAGGATTACAAGAAGACAGTTCAAGTATACCAGAGGATAAAAGAAACTGGACTGGAACCAGACGAGACCACTTACAATACTCTGATTATAATGTATTGTAGAGACAGACGACCAGAAGAAGGGTACTTGCTTATGCAGCAAATGAGAAATCTTGGTTTGGACCCAAAACTGGACACATACAAGAGCTTGATCTCTGCTTTTGGTAAGCAAAAATGCCTTGAACAAGCTGAACAACTGTTTGAAGAGCTTCTCTCAAAAGGTTTGAAACTAGACCGTTCATTTTACCACACAATGATGAAAATATCCCGAGATTCTGGAAGCGACTCCAAGGCAGAGAAGTTATTGCAAATGATGAAGAATGCGGGAATAGAACCAACACTTGCTACAATGCATCTGCTTATGGTTTCATATAGTTCTTCAGGAAATCCCCAAGAAGCTGAAAAAGTTCTTAGTAACCTGAAAGACACAGAAGTGGAACTAACAACTCTGCCTTATAGTTCAGTTATTGATGCTTACCTTCGGAGCAAAGATTATAACAGTGGAATAGAAAGGCTTTTGGAAATGAAGAAAGAGGGCCTAGAGCCAGACCACAGGATATGGACTTGCTTTGTTAGGGCGGCGAGTTTCTCCAAGGAAAAAATTGAAGTCATGTTGCTGCTTAAAGCTCTTGAAGATATTGGTTTTGATCTTCCTATCAGGCTTTTAGCTGGAAGACCTGAGTTGCTAGTTTCTGAGGTGGATGGATGGTTCGAGAAACTGAAATCCATAGAGGACAATGCTGCTCTCAATTTTGTTAATGCTCTTTTGAATCTTCTCTGGGCGTTTGAACTCAGAGCTACTGCATCATGGGTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAGGGTGGCGGACAAGGACTGGGGTGCGGATTTCAGAAGGCTGTCTGGAGGTGCAGCACTTGTTGCCCTGACGCTATGGCTTGACCACATGCAGGATGCATCACTGGAAGGCTACCCAGAGTCTCCAAAGTCAGTTGTCTTAATCACAGGGACCGCAGAGTACAACGGTATATCCCTTGATAAAACGCTAAAGGCGTGTCTTTGGGAAATGGGTTCTCCATTTCTTCCCTGCAAGACGAGAACGGGACTGCTAGTGGCCAAAGCTCACTCTCTCAGAATGTGGTTGAAGGACTCGCCGTTCTGCTTCGACTTGGAGCTAAAAGACTCGGTGTCTTTACCAGAATCAAACTCGATGGACCTGATTGACGGGTGTTTCATAAGACGTGGACTTGTTCCTGCGTTTAACCACATCAAAGAGAGACTTGGTGGATTTGTGTCACCAAAGAAGTTTTCGAGACTGGCGTTGCTACCAGACGAGATGAGAGAGCGAGTGATAAAGACAGATATTGAAGGACATAGACAGAAGTTAGAGAAGATGAAGAAGAAGAAAATGGGCAATGAAACGAATGGTATTAACACTCGAAGGAAGTTCGTCAGAAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1440

Amino Acids

162.34

Weight (kDa)

6.91

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	226 - 269	2.1e-10	PPR repeat family
PPR	PF01535	227 - 256	5.8e-06	PPR repeat
PPR_long	PF17177	281 - 417	1.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	284 - 343	2e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	292 - 324	4.7e-08	PPR repeat
PPR_2	PF13041	295 - 340	6.4e-13	PPR repeat family
PPR	PF01535	298 - 328	8.8e-06	PPR repeat
PPR_1	PF12854	327 - 357	5.1e-06	PPR repeat
PPR	PF01535	334 - 363	4.2e-06	PPR repeat
PPR_2	PF13041	334 - 379	4.3e-10	PPR repeat family
PPR_3	PF13812	353 - 414	2.9e-09	Pentatricopeptide repeat domain
PPR	PF01535	368 - 398	1e-05	PPR repeat
PPR_2	PF13041	401 - 449	5.6e-14	PPR repeat family
PPR_1	PF12854	401 - 429	7.5e-06	PPR repeat
PPR	PF01535	404 - 430	5.3e-06	PPR repeat
PPR_long	PF17177	416 - 521	2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	433 - 464	3.8e-06	PPR repeat
PPR_2	PF13041	436 - 485	3.8e-11	PPR repeat family
PPR_3	PF13812	460 - 517	2.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	475 - 518	3.9e-09	PPR repeat family
PPR_2	PF13041	785 - 833	9.7e-10	PPR repeat family
PPR	PF01535	789 - 817	1.8e-06	PPR repeat
TPR_24	PF23276	844 - 952	6.9e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	873 - 968	3.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	915 - 972	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	929 - 974	2.1e-08	PPR repeat family
PPR_long	PF17177	944 - 1051	2.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	957 - 989	4.7e-06	PPR repeat
PPR_2	PF13041	964 - 1009	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	1005, 1275, 1937, 2909, 3354
AccBSI	CCGCTC	1 cut(s)	2413
AccI	GTMKAC	3 cut(s)	2264, 2810, 2847
AccII	CGCG	3 cut(s)	48, 273, 925
AclWI	GGATC	2 cut(s)	1412, 1930
AcoI	YGGCCR	2 cut(s)	152, 3972
AcsI	RAATTY	7 cut(s)	116, 383, 835, 868, 934, 1898, 2791
AcuI	CTGAAG	8 cut(s)	1068, 1962, 2115, 2127, 2381, 2822, 3222, 3685
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	5 cut(s)	232, 683, 1169, 2945, 3878
AfeI	AGCGCT	1 cut(s)	1984
AflII	CTTAAG	1 cut(s)	1978
AflIII	ACRYGT	1 cut(s)	1230
AhdI	GACNNNNNGTC	1 cut(s)	4045
AjiI	CACGTC	1 cut(s)	4100
AjnI	CCWGG	2 cut(s)	1580, 1845
AjuI	GAANNNNNNNTTGG	2 cut(s)	4150, 4182
AleI	CACNNNNGTG	2 cut(s)	2070, 3290
AloI	GAACNNNNNNTCC	6 cut(s)	657, 689, 3551, 3583, 3998, 4030
Alw21I	GWGCWC	3 cut(s)	523, 1435, 2523
AlwI	GGATC	2 cut(s)	1412, 1930
Ama87I	CYCGRG	3 cut(s)	2513, 2604, 3126
Aor51HI	AGCGCT	1 cut(s)	1984
AoxI	GGCC	6 cut(s)	152, 881, 1578, 2760, 3394, 3972
ApoI	RAATTY	7 cut(s)	116, 383, 835, 868, 934, 1898, 2791
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	2 cut(s)	3066, 3264
AspLEI	GCGC	4 cut(s)	50, 1264, 1503, 1985
AspS9I	GGNCC	5 cut(s)	2450, 2980, 3394, 3867, 4072
AsuHPI	GGTGA	6 cut(s)	257, 874, 1168, 1795, 1981, 4146
AsuII	TTCGAA	2 cut(s)	725, 932
AvaI	CYCGRG	3 cut(s)	2513, 2604, 3126
AvaII	GGWCC	4 cut(s)	2450, 2980, 3867, 4072
BalI	TGGCCA	2 cut(s)	154, 3974
BanII	GRGCYC	2 cut(s)	523, 2523
BarI	GAAGNNNNNNTAC	2 cut(s)	1151, 1183
BbsI	GAAGAC	3 cut(s)	2369, 2840, 3538
Bbv12I	GWGCWC	3 cut(s)	523, 1435, 2523
BbvCI	CCTCAGC	1 cut(s)	1476
BceAI	ACGGC	4 cut(s)	128, 287, 2829, 3997
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	1582, 1847
BciVI	GTATCC	1 cut(s)	1474
BfaI	CTAG	9 cut(s)	645, 807, 1733, 1782, 1991, 3089, 3398, 3545, 3968
BfmI	CTRYAG	4 cut(s)	12, 1265, 1418, 1855
BfoI	RGCGCY	1 cut(s)	1986
BfrI	CTTAAG	1 cut(s)	1978
BfuI	GTATCC	1 cut(s)	1474
BglII	AGATCT	1 cut(s)	775
BlpI	GCTNAGC	1 cut(s)	651
Bme1390I	CCNGG	2 cut(s)	1582, 1847
Bme18I	GGWCC	4 cut(s)	2450, 2980, 3867, 4072
BmeRI	GACNNNNNGTC	1 cut(s)	4045
BmeT110I	CYCGRG	3 cut(s)	2513, 2604, 3126
BmgBI	CACGTC	1 cut(s)	4100
BmgT120I	GGNCC	5 cut(s)	2450, 2980, 3394, 3867, 4072
BmiI	GGNNCC	5 cut(s)	1304, 1852, 2877, 2982, 3868
BmrFI	CCNGG	2 cut(s)	1582, 1847
BmrI	ACTGGG	1 cut(s)	3745
BmuI	ACTGGG	1 cut(s)	3745
BpiI	GAAGAC	3 cut(s)	2369, 2840, 3538
BplI	GAGNNNNNCTC	2 cut(s)	3056, 3088
BpmI	CTGGAG	3 cut(s)	388, 1094, 3783
Bpu10I	CCTNAGC	2 cut(s)	1476, 1504
Bpu1102I	GCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	2 cut(s)	725, 932
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	1335
BsaAI	YACGTR	1 cut(s)	710
BsaI	GGTCTC	2 cut(s)	2749, 2879
BsaJI	CCNNGG	6 cut(s)	303, 1452, 1581, 1846, 3147, 3450
BsaWI	WCCGGW	2 cut(s)	211, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	8 cut(s)	371, 1917, 2872, 2877, 2994, 3740, 3825, 4179
Bse3DI	GCAATG	4 cut(s)	696, 756, 1960, 4279
BseBI	CCWGG	2 cut(s)	1582, 1847
BseCI	ATCGAT	1 cut(s)	1335
BseDI	CCNNGG	6 cut(s)	303, 1452, 1581, 1846, 3147, 3450
BseGI	GGATG	8 cut(s)	582, 946, 1552, 2452, 2694, 3565, 3569, 3817
BseMI	GCAATG	4 cut(s)	696, 756, 1960, 4279
BseNI	ACTGG	8 cut(s)	371, 1917, 2872, 2877, 2994, 3740, 3825, 4179
BseRI	GAGGAG	3 cut(s)	290, 1484, 2531
BsgI	GTGCAG	2 cut(s)	966, 3789
Bsh1236I	CGCG	3 cut(s)	48, 273, 925
BshFI	GGCC	6 cut(s)	154, 883, 1580, 2762, 3396, 3974
BshVI	ATCGAT	1 cut(s)	1335
BsiHKAI	GWGCWC	3 cut(s)	523, 1435, 2523
BsiHKCI	CYCGRG	3 cut(s)	2513, 2604, 3126
BsiSI	CCGG	3 cut(s)	212, 228, 236
BslFI	GGGAC	4 cut(s)	618, 1260, 3880, 3975
BsmBI	CGTCTC	1 cut(s)	2460
BsmFI	GGGAC	4 cut(s)	618, 1260, 3880, 3975
BsmI	GAATGC	3 cut(s)	1769, 1873, 3184
BsnI	GGCC	6 cut(s)	154, 883, 1580, 2762, 3396, 3974
Bso31I	GGTCTC	2 cut(s)	2749, 2879
BsoBI	CYCGRG	3 cut(s)	2513, 2604, 3126
Bsp119I	TTCGAA	2 cut(s)	725, 932
Bsp1286I	GDGCHC	3 cut(s)	523, 1435, 2523
Bsp1407I	TGTACA	1 cut(s)	681
Bsp1720I	GCTNAGC	1 cut(s)	651
BspANI	GGCC	6 cut(s)	154, 883, 1580, 2762, 3396, 3974
BspDI	ATCGAT	1 cut(s)	1335
BspFNI	CGCG	3 cut(s)	48, 273, 925
BspLI	GGNNCC	5 cut(s)	1304, 1852, 2877, 2982, 3868
BspMAI	CTGCAG	2 cut(s)	16, 1422
BspPI	GGATC	2 cut(s)	1412, 1930
BspQI	GCTCTTC	2 cut(s)	1067, 3057
BspT104I	TTCGAA	2 cut(s)	725, 932
BspTI	CTTAAG	1 cut(s)	1978
BspTNI	GGTCTC	2 cut(s)	2749, 2879
BsrBI	CCGCTC	1 cut(s)	2413
BsrDI	GCAATG	4 cut(s)	696, 756, 1960, 4279
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	8 cut(s)	371, 1917, 2872, 2877, 2994, 3740, 3825, 4179
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	6 cut(s)	303, 1452, 1581, 1846, 3147, 3450
BssNAI	GTATAC	3 cut(s)	2265, 2811, 2848
BssT1I	CCWWGG	3 cut(s)	1452, 3147, 3450
Bst1107I	GTATAC	3 cut(s)	2265, 2811, 2848
Bst2UI	CCWGG	2 cut(s)	1582, 1847
Bst6I	CTCTTC	4 cut(s)	912, 1067, 2751, 3057
BstAFI	CTTAAG	1 cut(s)	1978
BstAPI	GCANNNNNTGC	1 cut(s)	3779
BstAUI	TGTACA	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	710
BstBI	TTCGAA	2 cut(s)	725, 932
BstC8I	GCNNGC	8 cut(s)	1041, 1241, 1871, 1914, 2183, 2415, 2490, 2781
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	8 cut(s)	582, 946, 1552, 2452, 2694, 3565, 3569, 3817
BstFNI	CGCG	3 cut(s)	48, 273, 925
BstH2I	RGCGCY	1 cut(s)	1986
BstHHI	GCGC	4 cut(s)	50, 1264, 1503, 1985
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 32, 140, 1049, 1500, 2187, 2956, 3779
BstNI	CCWGG	2 cut(s)	1582, 1847
BstNSI	RCATGY	5 cut(s)	1234, 1498, 1916, 2492, 3808
BstSCI	CCNGG	2 cut(s)	1580, 1845
BstSFI	CTRYAG	4 cut(s)	12, 1265, 1418, 1855
BstUI	CGCG	3 cut(s)	48, 273, 925
BstV2I	GAAGAC	3 cut(s)	2369, 2840, 3538
BstX2I	RGATCY	2 cut(s)	775, 1922
BstYI	RGATCY	2 cut(s)	775, 1922
BstZ17I	GTATAC	3 cut(s)	2265, 2811, 2848
Bsu15I	ATCGAT	1 cut(s)	1335
BsuI	GTATCC	1 cut(s)	1474
BsuRI	GGCC	6 cut(s)	154, 883, 1580, 2762, 3396, 3974
BsuTUI	ATCGAT	1 cut(s)	1335
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	4100
BtsCI	GGATG	8 cut(s)	582, 946, 1552, 2452, 2694, 3565, 3569, 3817
BtsI	GCAGTG	3 cut(s)	954, 1107, 2065
Cac8I	GCNNGC	8 cut(s)	1041, 1241, 1871, 1914, 2183, 2415, 2490, 2781
CfoI	GCGC	4 cut(s)	50, 1264, 1503, 1985
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	5 cut(s)	2450, 2980, 3394, 3867, 4072
ClaI	ATCGAT	1 cut(s)	1335
CseI	GACGC	3 cut(s)	743, 2603, 3796
Csp6I	GTAC	5 cut(s)	231, 682, 1168, 2944, 3877
CspCI	CAANNNNNGTGG	2 cut(s)	2231, 2266
CviQI	GTAC	5 cut(s)	231, 682, 1168, 2944, 3877
DraIII	CACNNNGTG	1 cut(s)	713
DriI	GACNNNNNGTC	1 cut(s)	4045
EaeI	YGGCCR	2 cut(s)	152, 3972
Eam1104I	CTCTTC	4 cut(s)	912, 1067, 2751, 3057
Eam1105I	GACNNNNNGTC	1 cut(s)	4045
EarI	CTCTTC	4 cut(s)	912, 1067, 2751, 3057
EciI	GGCGGA	2 cut(s)	2666, 3740
Ecl136II	GAGCTC	2 cut(s)	521, 2521
Eco130I	CCWWGG	3 cut(s)	1452, 3147, 3450
Eco147I	AGGCCT	2 cut(s)	883, 1580
Eco24I	GRGCYC	2 cut(s)	523, 2523
Eco31I	GGTCTC	2 cut(s)	2749, 2879
Eco32I	GATATC	1 cut(s)	2272
Eco47I	GGWCC	4 cut(s)	2450, 2980, 3867, 4072
Eco47III	AGCGCT	1 cut(s)	1984
Eco53kI	GAGCTC	2 cut(s)	521, 2521
Eco57I	CTGAAG	8 cut(s)	1068, 1962, 2115, 2127, 2381, 2822, 3222, 3685
Eco88I	CYCGRG	3 cut(s)	2513, 2604, 3126
EcoICRI	GAGCTC	2 cut(s)	521, 2521
EcoO109I	RGGNCCY	1 cut(s)	3394
EcoRI	GAATTC	2 cut(s)	868, 2791
EcoRII	CCWGG	2 cut(s)	1580, 1845
EcoRV	GATATC	1 cut(s)	2272
EcoT14I	CCWWGG	3 cut(s)	1452, 3147, 3450
EcoT22I	ATGCAT	2 cut(s)	3213, 3817
EcoT38I	GRGCYC	2 cut(s)	523, 2523
ErhI	CCWWGG	3 cut(s)	1452, 3147, 3450
Esp3I	CGTCTC	1 cut(s)	2460
FalI	AAGNNNNNCTT	4 cut(s)	2174, 2206, 4122, 4154
FaqI	GGGAC	4 cut(s)	618, 1260, 3880, 3975
FauI	CCCGC	5 cut(s)	148, 278, 918, 2406, 3175
FblI	GTMKAC	3 cut(s)	2264, 2810, 2847
FokI	GGATG	8 cut(s)	589, 953, 1559, 2459, 2701, 3572, 3576, 3824
FriOI	GRGCYC	2 cut(s)	523, 2523
FspBI	CTAG	9 cut(s)	645, 807, 1733, 1782, 1991, 3089, 3398, 3545, 3968
GlaI	GCGC	4 cut(s)	49, 1263, 1502, 1984
GsuI	CTGGAG	3 cut(s)	388, 1094, 3783
HaeII	RGCGCY	1 cut(s)	1986
HaeIII	GGCC	6 cut(s)	154, 883, 1580, 2762, 3396, 3974
HapII	CCGG	3 cut(s)	212, 228, 236
HgaI	GACGC	3 cut(s)	743, 2603, 3796
HhaI	GCGC	4 cut(s)	50, 1264, 1503, 1985
Hin6I	GCGC	4 cut(s)	48, 1262, 1501, 1983
HinP1I	GCGC	4 cut(s)	48, 1262, 1501, 1983
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	4 cut(s)	406, 2097, 2139, 2183
HpaII	CCGG	3 cut(s)	212, 228, 236
HphI	GGTGA	6 cut(s)	257, 874, 1168, 1795, 1981, 4146
Hpy99I	CGWCG	3 cut(s)	257, 488, 665
HpyCH4IV	ACGT	3 cut(s)	709, 2526, 4099
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 32, 140, 1049, 1500, 2187, 2956, 3779
HpySE526I	ACGT	3 cut(s)	709, 2526, 4099
HspAI	GCGC	4 cut(s)	48, 1262, 1501, 1983
LguI	GCTCTTC	2 cut(s)	1067, 3057
LmnI	GCTCC	7 cut(s)	277, 1069, 1075, 2518, 2579, 3342, 4030
MaeI	CTAG	9 cut(s)	645, 807, 1733, 1782, 1991, 3089, 3398, 3545, 3968
MaeII	ACGT	3 cut(s)	709, 2526, 4099
MaeIII	GTNAC	6 cut(s)	1102, 1890, 2405, 2660, 3272, 4152
MbiI	CCGCTC	1 cut(s)	2413
MfeI	CAATTG	2 cut(s)	261, 3677
MflI	RGATCY	2 cut(s)	775, 1922
MhlI	GDGCHC	3 cut(s)	523, 1435, 2523
MlsI	TGGCCA	2 cut(s)	154, 3974
MluNI	TGGCCA	2 cut(s)	154, 3974
MmeI	TCCRAC	2 cut(s)	643, 1524
Mox20I	TGGCCA	2 cut(s)	154, 3974
Mph1103I	ATGCAT	2 cut(s)	3213, 3817
MroXI	GAANNNNTTC	2 cut(s)	3066, 3264
MscI	TGGCCA	2 cut(s)	154, 3974
MslI	CAYNNNNRTG	7 cut(s)	1229, 1233, 1917, 2070, 2438, 3113, 3290
Msp20I	TGGCCA	2 cut(s)	154, 3974
MspCI	CTTAAG	1 cut(s)	1978
MspI	CCGG	3 cut(s)	212, 228, 236
MspR9I	CCNGG	2 cut(s)	1582, 1847
MunI	CAATTG	2 cut(s)	261, 3677
Mva1269I	GAATGC	3 cut(s)	1769, 1873, 3184
MvaI	CCWGG	2 cut(s)	1582, 1847
MvnI	CGCG	3 cut(s)	48, 273, 925
MwoI	GCNNNNNNNGC	8 cut(s)	11, 32, 140, 1049, 1500, 2187, 2956, 3779
NlaIV	GGNNCC	5 cut(s)	1304, 1852, 2877, 2982, 3868
NmuCI	GTSAC	2 cut(s)	1102, 4152
NsiI	ATGCAT	2 cut(s)	3213, 3817
NspI	RCATGY	5 cut(s)	1234, 1498, 1916, 2492, 3808
NspV	TTCGAA	2 cut(s)	725, 932
OliI	CACNNNNGTG	2 cut(s)	2070, 3290
PaeI	GCATGC	2 cut(s)	1916, 2492
PaeR7I	CTCGAG	1 cut(s)	2513
PceI	AGGCCT	2 cut(s)	883, 1580
PciI	ACATGT	1 cut(s)	1230
PciSI	GCTCTTC	2 cut(s)	1067, 3057
PcsI	WCGNNNNNNNCGW	3 cut(s)	929, 3908, 4175
PctI	GAATGC	3 cut(s)	1769, 1873, 3184
PdmI	GAANNNNTTC	2 cut(s)	3066, 3264
Ppu21I	YACGTR	1 cut(s)	710
PscI	ACATGT	1 cut(s)	1230
PsiI	TTATAA	5 cut(s)	1005, 1275, 1937, 2909, 3354
Psp124BI	GAGCTC	2 cut(s)	523, 2523
Psp6I	CCWGG	2 cut(s)	1580, 1845
PspGI	CCWGG	2 cut(s)	1580, 1845
PspN4I	GGNNCC	5 cut(s)	1304, 1852, 2877, 2982, 3868
PspPI	GGNCC	5 cut(s)	2450, 2980, 3394, 3867, 4072
PspXI	VCTCGAGB	1 cut(s)	2513
PstI	CTGCAG	2 cut(s)	16, 1422
PsuI	RGATCY	2 cut(s)	775, 1922
RsaI	GTAC	5 cut(s)	232, 683, 1169, 2945, 3878
RsaNI	GTAC	5 cut(s)	231, 682, 1168, 2944, 3877
RseI	CAYNNNNRTG	7 cut(s)	1229, 1233, 1917, 2070, 2438, 3113, 3290
SacI	GAGCTC	2 cut(s)	523, 2523
SapI	GCTCTTC	2 cut(s)	1067, 3057
Sau96I	GGNCC	5 cut(s)	2450, 2980, 3394, 3867, 4072
ScrFI	CCNGG	2 cut(s)	1582, 1847
SduI	GDGCHC	3 cut(s)	523, 1435, 2523
SfcI	CTRYAG	4 cut(s)	12, 1265, 1418, 1855
Sfr274I	CTCGAG	1 cut(s)	2513
SfuI	TTCGAA	2 cut(s)	725, 932
SinI	GGWCC	4 cut(s)	2450, 2980, 3867, 4072
SlaI	CTCGAG	1 cut(s)	2513
SmiMI	CAYNNNNRTG	7 cut(s)	1229, 1233, 1917, 2070, 2438, 3113, 3290
SmlI	CTYRAG	3 cut(s)	524, 1978, 2513
SmoI	CTYRAG	3 cut(s)	524, 1978, 2513
SphI	GCATGC	2 cut(s)	1916, 2492
SseBI	AGGCCT	2 cut(s)	883, 1580
SspI	AATATT	2 cut(s)	2000, 2479
SspMI	CTAG	9 cut(s)	645, 807, 1733, 1782, 1991, 3089, 3398, 3545, 3968
SstI	GAGCTC	2 cut(s)	523, 2523
StuI	AGGCCT	2 cut(s)	883, 1580
StyD4I	CCNGG	2 cut(s)	1580, 1845
StyI	CCWWGG	3 cut(s)	1452, 3147, 3450
TaiI	ACGT	3 cut(s)	712, 2529, 4102
TatI	WGTACW	2 cut(s)	681, 3876
TauI	GCSGC	2 cut(s)	1373, 3440
TseFI	GTSAC	2 cut(s)	1102, 4152
Tsp45I	GTSAC	2 cut(s)	1102, 4152
TspGWI	ACGGA	6 cut(s)	31, 158, 407, 539, 1163, 2442
Vha464I	CTTAAG	1 cut(s)	1978
VpaK11BI	GGWCC	4 cut(s)	2450, 2980, 3867, 4072
XapI	RAATTY	7 cut(s)	116, 383, 835, 868, 934, 1898, 2791
XbaI	TCTAGA	1 cut(s)	1990
XceI	RCATGY	5 cut(s)	1234, 1498, 1916, 2492, 3808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1702
XhoI	CTCGAG	1 cut(s)	2513
XmiI	GTMKAC	3 cut(s)	2264, 2810, 2847
XmnI	GAANNNNTTC	2 cut(s)	3066, 3264
XspI	CTAG	9 cut(s)	645, 807, 1733, 1782, 1991, 3089, 3398, 3545, 3968
Zsp2I	ATGCAT	2 cut(s)	3213, 3817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.