Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

21253850 .. 21259913

Gene Structure 6064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4491 bp

ATGTCATTCACAGGAGTCCTGGCCCTGGCTACCTCGCCCTTATTCCATTCAGACTCCTCACTCTCTTCTTCTTCTTCTTCTTCTTCAGATAAGGTACGCAAAAGCACTTGTCTTTCTTGCTCTTTAACTCAAACACCTTCTACTTCTAGTTCTGAGCAGCCCAATAATGATAGTAATACTAGTCAAATTAACAATAACAACAAGTTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCTGAAACTTACCCTTCAGCTCCTCACACCCCTGTTGTTGTTGAGGATGCCGGGTTTTCGGCGCAACTCTCTGACTCTGATTCTGAGAGCAAAGAGGAAGATAATGGGGATGTGGGTTCTGCAGCATTAGGTTTGGATAAGAATGATGAGACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACTAAACTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTGAGGTTCTATTCTGATAGGATTTTGGGGTTGAAATCTGATGAGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTGCAGATGACCCCTACTGATTTTTGCTTTGTGGTGAAATGGGTGGGACAGAAGAGCTGGCAACGCGCGTTGGAGGTGTACGAGTGGCTGAATTTACGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCAGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAAGTGTACAATGCAATGATGGGTGTCTATGCACGAAATGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACCTAATGCGTGAGAGGGGGTGTGAGCCGGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTTAGGTCAGGTCCCATGGTACCAAATTTGGCTATTGAGCTTTTGAATGAGGTGAGGAGGTCTGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGTGGCTGCGCACGTGAATCCAATTTGGACGAGGCGGTGAAGGTCTACGCTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCTGTATATGGCAGATGTGGGCAGTCAAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAAGGGTTTTTCCCAGATGCAGTGACGTATAATTCTTTGTTATATGCTTTTGCAAGAGAACTTAATATAGAAAAGGTCAGAGATATTTGTGAAGACATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACAATCATCCACATGTATGGCAAGCAGGGTCAGCATGATCAAGCACAGCAGGTTTACCAAGATATGAAAATGTTAGGCCGAATACCTGACGCTGTTACATACACTGTTTTGATAGATTCCCTAGGGAAAGAAAATAAGATTACAGAGGCCGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGGTATGCCAAGGCTGGCAAACAGGTGGAGGCTCAAGAGACATTTGATTGCATGATTAGGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTCTGTTGGATATCTTTCTCAGGTCCAATGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGTTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGAGGGTGCTTGGAAGTGAAAACAAATTGGAAACTATTGAAAGAGTGATTAGAGACATGGAAAAGGTTGGTGGTATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTAAGATTAGCCATCACCAGTGGTTATGAATTGGACCGGGAAAGCCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTTGGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCCAGTTCCAACCAATTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGGTGCCTTGGCAGAATATAGTAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATTTTGATTCAAGGGTGTGAGAAGAATGAACTCTTCAGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCGGATATATTGCAACATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGCCATGAAGGGCATTCTTTTTGACAATATCTCCATATGTGTTGATGTTATTGAAGTCTATGGGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTCGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACAGTAGAGTCTGTTAATGGTCTTTTGCAAGCTTTAATTGTTGATGGGAGATTGGACGAAATTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTATTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCTGGTTATTTTCCTACAATGAATAGTTTCAGAATTATGATCAAATTATTGTCCAAGAGGAAACAAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGATTCAAGCCTGATCTTTCAATATGGAACTGCATGCTTAAGTTATATGCAGGAGTGGAGGATTATAAAAAGACAGTTAATGTATACCAACGTATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACCTTAATTATAATGTACTGCAGAGATCGTAGACCCGAAGAAGGTTTGTCTTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCTAAGTTAAACACTTACAAAAGCTTAATTTCAGCATTCGGTAAGCAGCAGTTGTTGGATCAAGCTGAGGAGCTTTTTGAAGAGTTAAGGTCTAGCGGATGTAAATTGGATCGCTCATTTTATCATACGATGATGAAACTATATAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCTAATTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTGAGGAAGCAGAAAAGGTGCTTGACAATTTGAAAGTAACTGATTCATATCTGGGTACATTACCCTACAGTTCAGTTATTGATGCTTATTTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAGAGATGGTCCGGAGCCAGATCATAGAATATGGACATGCTTCATTAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGTGTTTGTTCTCCTAAATGCACTCCGTGATGCTGGATTTGACCTTCCAATCAGGCTTATGAAGGAAAAGTCTGAGTCACTCATTCCAGATGTAGACCAATGTCTAGAGAAATTAGCACCCTTAGATGACAATGCAGCCTTCAATTTTGTCAATGCACTAGGAGACCTCTTATGGGCATATGAACTCAGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCATGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGATGCATCCTTGGAGGGTTTTCCAGAGTCTCCCAAATCAGTTGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACACTGAAGACATGCCTTTGGGAAATTGGTTCCCCTTTTCTGCCGTGTAAAACACGAAGTGGCCTTCTCGTAGCAAAGGCACACTCCCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCGCTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAACGAGAAGCTTGAATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAGAGGGAAAGGGTTATTCAAGCTGATATTGAGGGGAGGAAGGAGAAGTTAGAAAAAATGAGAAAGAGGGGAAATGTTGACCCAAGGAGGGTGAACAGGATTAAGAAGCTCAGAAAGAGGACATATAGAAGACCGGCCATGCTAGCAAACACCAAACAAACTGTATCAAAAAGAAGAGCTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1497

Amino Acids

169.24

Weight (kDa)

6.94

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	233 - 361	2.5e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	264 - 308	5.1e-10	PPR repeat family
PPR	PF01535	266 - 295	3.2e-06	PPR repeat
PPR_2	PF13041	298 - 348	6.1e-09	PPR repeat family
PPR_long	PF17177	320 - 459	2.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	323 - 382	5e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 363	1.9e-09	PPR repeat
PPR_2	PF13041	334 - 379	1e-14	PPR repeat family
PPR	PF01535	337 - 367	8.1e-07	PPR repeat
PPR_1	PF12854	366 - 397	1.6e-06	PPR repeat
PPR_2	PF13041	373 - 418	3.6e-12	PPR repeat family
PPR	PF01535	373 - 402	4.7e-08	PPR repeat
PPR_3	PF13812	393 - 453	3.9e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	428 - 488	5.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	440 - 487	1.1e-14	PPR repeat family
PPR_long	PF17177	458 - 555	2.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	474 - 502	8.2e-06	PPR repeat
PPR_2	PF13041	474 - 523	1e-12	PPR repeat family
PPR_3	PF13812	498 - 556	1.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	513 - 555	7.4e-07	PPR repeat family
PPR_2	PF13041	720 - 765	1.8e-06	PPR repeat family
TPR_24	PF23276	882 - 989	3.6e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	910 - 1006	3.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	952 - 1009	8.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	962 - 1011	2.7e-08	PPR repeat family
PPR_long	PF17177	985 - 1067	3.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	995 - 1026	9.4e-06	PPR repeat
PPR_2	PF13041	997 - 1046	7.5e-11	PPR repeat family
PPR	PF01535	1001 - 1030	3.9e-07	PPR repeat
PPR_3	PF13812	1020 - 1079	4.7e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	1028, 1122, 2940, 3020, 3465
Acc16I	TGCGCA	1 cut(s)	1039
Acc36I	ACCTGC	1 cut(s)	1375
Acc65I	GGTACC	1 cut(s)	946
AccB1I	GGYRCC	2 cut(s)	946, 2099
AccB7I	CCANNNNNTGG	2 cut(s)	483, 2275
AccBSI	CCGCTC	1 cut(s)	2524
AccI	GTMKAC	5 cut(s)	1074, 1984, 2958, 3040, 3669
AccII	CGCG	2 cut(s)	636, 638
AccIII	TCCGGA	1 cut(s)	3508
AciI	CCGC	7 cut(s)	1064, 1485, 2281, 2505, 2524, 2873, 3189
AclWI	GGATC	2 cut(s)	3159, 3210
AcoI	YGGCCR	1 cut(s)	4437
AcsI	RAATTY	8 cut(s)	661, 952, 2090, 2166, 2631, 3241, 3474, 4271
AcuI	CTGAAG	4 cut(s)	69, 255, 2185, 4037
AcvI	CACGTG	1 cut(s)	1043
AdeI	CACNNNGTG	2 cut(s)	3602, 4070
AfeI	AGCGCT	1 cut(s)	4161
AfiI	CCNNNNNNNGG	9 cut(s)	25, 483, 779, 1533, 1753, 2275, 3050, 3748, 4390
AflII	CTTAAG	3 cut(s)	467, 2912, 4204
AflIII	ACRYGT	1 cut(s)	1347
AhlI	ACTAGT	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	4211
AjnI	CCWGG	7 cut(s)	18, 24, 732, 761, 1707, 2646, 3087
Alw26I	GTCTC	8 cut(s)	398, 908, 1589, 1676, 1809, 2303, 3732, 3954
AlwI	GGATC	2 cut(s)	3159, 3210
AlwNI	CAGNNNCTG	1 cut(s)	3088
Ama87I	CYCGRG	2 cut(s)	2306, 2715
Aor13HI	TCCGGA	1 cut(s)	3508
Aor51HI	AGCGCT	1 cut(s)	4161
ApoI	RAATTY	8 cut(s)	661, 952, 2090, 2166, 2631, 3241, 3474, 4271
ArsI	GACNNNNNNTTYG	2 cut(s)	1481, 1513
Asp700I	GAANNNNTTC	1 cut(s)	2792
Asp718I	GGTACC	1 cut(s)	946
AspA2I	CCTAGG	1 cut(s)	1456
AspLEI	GCGC	4 cut(s)	319, 638, 1040, 4162
AsuC2I	CCSGG	2 cut(s)	307, 1940
AsuHPI	GGTGA	9 cut(s)	216, 616, 991, 1078, 1309, 1909, 2099, 2749, 4405
AsuNHI	GCTAGC	1 cut(s)	4444
AvaI	CYCGRG	2 cut(s)	2306, 2715
AvaII	GGWCC	7 cut(s)	892, 938, 1674, 1936, 2561, 3506, 4135
AvrII	CCTAGG	1 cut(s)	1456
AxyI	CCTNAGG	1 cut(s)	3360
BanI	GGYRCC	2 cut(s)	946, 2099
BbrPI	CACGTG	1 cut(s)	1043
BbsI	GAAGAC	3 cut(s)	1296, 4025, 4438
BbvCI	CCTCAGC	1 cut(s)	3159
BceAI	ACGGC	1 cut(s)	4039
BciT130I	CCWGG	7 cut(s)	20, 26, 734, 763, 1709, 2648, 3089
BclI	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
BcnI	CCSGG	2 cut(s)	307, 1940
BcoDI	GTCTC	8 cut(s)	398, 908, 1589, 1676, 1809, 2303, 3732, 3954
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	9 cut(s)	147, 180, 1457, 1640, 2529, 3186, 3680, 3734, 4445
BfmI	CTRYAG	4 cut(s)	211, 375, 3028, 3424
BfoI	RGCGCY	1 cut(s)	4163
BfrI	CTTAAG	3 cut(s)	467, 2912, 4204
BfuAI	ACCTGC	1 cut(s)	1375
BlnI	CCTAGG	1 cut(s)	1456
BlpI	GCTNAGC	2 cut(s)	768, 1170
Bme1390I	CCNGG	9 cut(s)	20, 26, 307, 734, 763, 1709, 1940, 2648, 3089
Bme18I	GGWCC	7 cut(s)	892, 938, 1674, 1936, 2561, 3506, 4135
BmeT110I	CYCGRG	2 cut(s)	2306, 2715
BmgBI	CACGTC	1 cut(s)	4211
BmiI	GGNNCC	6 cut(s)	940, 948, 2101, 3093, 3513, 4042
BmrFI	CCNGG	9 cut(s)	20, 26, 307, 734, 763, 1709, 1940, 2648, 3089
BmrI	ACTGGG	3 cut(s)	403, 2028, 3856
BmtI	GCTAGC	1 cut(s)	4448
BmuI	ACTGGG	3 cut(s)	403, 2028, 3856
BoxI	GACNNNNGTC	1 cut(s)	3675
BpiI	GAAGAC	3 cut(s)	1296, 4025, 4438
Bpu10I	CCTNAGC	1 cut(s)	3159
Bpu1102I	GCTNAGC	2 cut(s)	768, 1170
BpuEI	CTTGAG	2 cut(s)	1575, 4160
BpuMI	CCSGG	2 cut(s)	307, 1940
BsaAI	YACGTR	1 cut(s)	1043
BsaBI	GATNNNNATC	1 cut(s)	3405
BsaI	GGTCTC	2 cut(s)	398, 3732
BsaWI	WCCGGW	1 cut(s)	3508
BsaXI	ACNNNNNCTCC	4 cut(s)	976, 1006, 2351, 2381
Bsc4I	CCNNNNNNNGG	9 cut(s)	25, 483, 779, 1533, 1753, 2275, 3050, 3748, 4390
Bse118I	RCCGGY	1 cut(s)	4435
Bse1I	ACTGG	9 cut(s)	409, 465, 677, 1920, 2034, 3475, 3795, 3851, 4287
Bse21I	CCTNAGG	1 cut(s)	3360
Bse3DI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
Bse8I	GATNNNNATC	1 cut(s)	3405
BseAI	TCCGGA	1 cut(s)	3508
BseBI	CCWGG	7 cut(s)	20, 26, 734, 763, 1709, 2648, 3089
BseGI	GGATG	9 cut(s)	307, 370, 565, 1341, 2845, 3197, 3926, 3928, 4202
BseJI	GATNNNNATC	1 cut(s)	3405
BseLI	CCNNNNNNNGG	9 cut(s)	25, 483, 779, 1533, 1753, 2275, 3050, 3748, 4390
BseMI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
BseNI	ACTGG	9 cut(s)	409, 465, 677, 1920, 2034, 3475, 3795, 3851, 4287
BseRI	GAGGAG	4 cut(s)	46, 267, 997, 3176
BseYI	CCCAGC	3 cut(s)	428, 3561, 4156
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	2 cut(s)	636, 638
BshNI	GGYRCC	2 cut(s)	946, 2099
BsiHKCI	CYCGRG	2 cut(s)	2306, 2715
BsiSI	CCGG	5 cut(s)	306, 890, 1939, 3509, 4436
BslFI	GGGAC	4 cut(s)	630, 924, 3544, 3991
BslI	CCNNNNNNNGG	9 cut(s)	25, 483, 779, 1533, 1753, 2275, 3050, 3748, 4390
BsmAI	GTCTC	8 cut(s)	398, 908, 1589, 1676, 1809, 2303, 3732, 3954
BsmFI	GGGAC	4 cut(s)	630, 924, 3544, 3991
BsmI	GAATGC	7 cut(s)	691, 699, 1846, 1883, 2349, 2488, 3128
Bso31I	GGTCTC	2 cut(s)	398, 3732
BsoBI	CYCGRG	2 cut(s)	2306, 2715
Bsp13I	TCCGGA	1 cut(s)	3508
Bsp1407I	TGTACA	1 cut(s)	798
Bsp1720I	GCTNAGC	2 cut(s)	768, 1170
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	7 cut(s)	1064, 1485, 2281, 2505, 2524, 2873, 3189
BspEI	TCCGGA	1 cut(s)	3508
BspFNI	CGCG	2 cut(s)	636, 638
BspLI	GGNNCC	6 cut(s)	940, 948, 2101, 3093, 3513, 4042
BspMAI	CTGCAG	2 cut(s)	379, 3032
BspMI	ACCTGC	1 cut(s)	1375
BspOI	GCTAGC	1 cut(s)	4448
BspPI	GGATC	2 cut(s)	3159, 3210
BspQI	GCTCTTC	2 cut(s)	617, 4471
BspT107I	GGYRCC	2 cut(s)	946, 2099
BspTI	CTTAAG	3 cut(s)	467, 2912, 4204
BspTNI	GGTCTC	2 cut(s)	398, 3732
BsrBI	CCGCTC	1 cut(s)	2524
BsrDI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
BsrFI	RCCGGY	1 cut(s)	4435
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	9 cut(s)	409, 465, 677, 1920, 2034, 3475, 3795, 3851, 4287
BssAI	RCCGGY	1 cut(s)	4435
BssNAI	GTATAC	1 cut(s)	2959
BssT1I	CCWWGG	9 cut(s)	438, 477, 942, 1456, 1566, 2103, 2124, 3930, 4385
Bst1107I	GTATAC	1 cut(s)	2959
Bst2UI	CCWGG	7 cut(s)	20, 26, 734, 763, 1709, 2648, 3089
Bst4CI	ACNGT	9 cut(s)	790, 1100, 1441, 1514, 2464, 2575, 2950, 3428, 4465
Bst6I	CTCTTC	9 cut(s)	70, 617, 1536, 1861, 2204, 2862, 3168, 3491, 4471
BstAFI	CTTAAG	3 cut(s)	467, 2912, 4204
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	1 cut(s)	1043
BstDSI	CCRYGG	1 cut(s)	942
BstENI	CCTNNNNNAGG	1 cut(s)	1751
BstF5I	GGATG	9 cut(s)	307, 370, 565, 1341, 2845, 3197, 3926, 3928, 4202
BstFNI	CGCG	2 cut(s)	636, 638
BstH2I	RGCGCY	1 cut(s)	4163
BstHHI	GCGC	4 cut(s)	319, 638, 1040, 4162
BstMAI	GTCTC	8 cut(s)	398, 908, 1589, 1676, 1809, 2303, 3732, 3954
BstMWI	GCNNNNNNNGC	8 cut(s)	633, 686, 856, 1366, 2504, 3881, 4283, 4445
BstNI	CCWGG	7 cut(s)	20, 26, 734, 763, 1709, 2648, 3089
BstNSI	RCATGY	6 cut(s)	1351, 2001, 2030, 2911, 3537, 4026
BstPAI	GACNNNNGTC	1 cut(s)	3675
BstSCI	CCNGG	9 cut(s)	18, 24, 305, 732, 761, 1707, 1938, 2646, 3087
BstSFI	CTRYAG	4 cut(s)	211, 375, 3028, 3424
BstUI	CGCG	2 cut(s)	636, 638
BstV2I	GAAGAC	3 cut(s)	1296, 4025, 4438
BstXI	CCANNNNNNTGG	1 cut(s)	1352
BstZ17I	GTATAC	1 cut(s)	2959
Bsu36I	CCTNAGG	1 cut(s)	3360
BtgI	CCRYGG	1 cut(s)	942
BtrI	CACGTC	1 cut(s)	4211
BtsCI	GGATG	9 cut(s)	307, 370, 565, 1341, 2845, 3197, 3926, 3928, 4202
BtsI	GCAGTG	1 cut(s)	1224
BtsIMutI	CAGTG	9 cut(s)	670, 1224, 1437, 1519, 1927, 2209, 2469, 3468, 4013
BveI	ACCTGC	1 cut(s)	1375
CaiI	CAGNNNCTG	1 cut(s)	3088
CfoI	GCGC	4 cut(s)	319, 638, 1040, 4162
Cfr10I	RCCGGY	1 cut(s)	4435
CseI	GACGC	1 cut(s)	1433
DraI	TTTAAA	2 cut(s)	2671, 4231
DraIII	CACNNNGTG	2 cut(s)	3602, 4070
EaeI	YGGCCR	1 cut(s)	4437
Eam1104I	CTCTTC	9 cut(s)	70, 617, 1536, 1861, 2204, 2862, 3168, 3491, 4471
EarI	CTCTTC	9 cut(s)	70, 617, 1536, 1861, 2204, 2862, 3168, 3491, 4471
Eco130I	CCWWGG	9 cut(s)	438, 477, 942, 1456, 1566, 2103, 2124, 3930, 4385
Eco31I	GGTCTC	2 cut(s)	398, 3732
Eco32I	GATATC	1 cut(s)	1663
Eco47I	GGWCC	7 cut(s)	892, 938, 1674, 1936, 2561, 3506, 4135
Eco47III	AGCGCT	1 cut(s)	4161
Eco57I	CTGAAG	4 cut(s)	69, 255, 2185, 4037
Eco72I	CACGTG	1 cut(s)	1043
Eco81I	CCTNAGG	1 cut(s)	3360
Eco88I	CYCGRG	2 cut(s)	2306, 2715
EcoNI	CCTNNNNNAGG	1 cut(s)	1751
EcoO109I	RGGNCCY	2 cut(s)	938, 3085
EcoRI	GAATTC	1 cut(s)	3474
EcoRII	CCWGG	7 cut(s)	18, 24, 732, 761, 1707, 2646, 3087
EcoRV	GATATC	1 cut(s)	1663
EcoT14I	CCWWGG	9 cut(s)	438, 477, 942, 1456, 1566, 2103, 2124, 3930, 4385
EcoT22I	ATGCAT	2 cut(s)	3069, 3928
ErhI	CCWWGG	9 cut(s)	438, 477, 942, 1456, 1566, 2103, 2124, 3930, 4385
FalI	AAGNNNNNCTT	5 cut(s)	2967, 2999, 4270, 4302, 4465
FaqI	GGGAC	4 cut(s)	630, 924, 3544, 3991
FauI	CCCGC	2 cut(s)	2517, 2866
FauNDI	CATATG	2 cut(s)	2372, 3754
FbaI	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
FblI	GTMKAC	5 cut(s)	1074, 1984, 2958, 3040, 3669
FokI	GGATG	9 cut(s)	314, 377, 572, 1328, 2852, 3204, 3913, 3935, 4209
FspBI	CTAG	9 cut(s)	147, 180, 1457, 1640, 2529, 3186, 3680, 3734, 4445
FspI	TGCGCA	1 cut(s)	1039
GlaI	GCGC	4 cut(s)	318, 637, 1039, 4161
GsaI	CCCAGC	3 cut(s)	432, 3565, 4160
HaeII	RGCGCY	1 cut(s)	4163
HapII	CCGG	5 cut(s)	306, 890, 1939, 3509, 4436
HgaI	GACGC	1 cut(s)	1433
HhaI	GCGC	4 cut(s)	319, 638, 1040, 4162
Hin6I	GCGC	4 cut(s)	317, 636, 1038, 4160
HinP1I	GCGC	4 cut(s)	317, 636, 1038, 4160
HincII	GTYRAC	2 cut(s)	1103, 4381
HindII	GTYRAC	2 cut(s)	1103, 4381
HindIII	AAGCTT	6 cut(s)	738, 2208, 2496, 2601, 3115, 4247
HpaII	CCGG	5 cut(s)	306, 890, 1939, 3509, 4436
HphI	GGTGA	9 cut(s)	216, 616, 991, 1078, 1309, 1909, 2099, 2749, 4405
Hpy188III	TCNNGA	8 cut(s)	1592, 2479, 3246, 3351, 3509, 3662, 3680, 3944
HpyCH4III	ACNGT	9 cut(s)	790, 1100, 1441, 1514, 2464, 2575, 2950, 3428, 4465
HpyCH4IV	ACGT	4 cut(s)	1042, 1223, 2965, 4210
HpyF10VI	GCNNNNNNNGC	8 cut(s)	633, 686, 856, 1366, 2504, 3881, 4283, 4445
HpySE526I	ACGT	4 cut(s)	1042, 1223, 2965, 4210
HspAI	GCGC	4 cut(s)	317, 636, 1038, 4160
Kpn2I	TCCGGA	1 cut(s)	3508
KpnI	GGTACC	1 cut(s)	950
Ksp22I	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
LguI	GCTCTTC	2 cut(s)	617, 4471
LmnI	GCTCC	5 cut(s)	280, 2035, 3163, 3511, 4167
MaeI	CTAG	9 cut(s)	147, 180, 1457, 1640, 2529, 3186, 3680, 3734, 4445
MaeII	ACGT	4 cut(s)	1042, 1223, 2965, 4210
MaeIII	GTNAC	5 cut(s)	1219, 1429, 2723, 3394, 3651
MbiI	CCGCTC	1 cut(s)	2524
MfeI	CAATTG	1 cut(s)	2045
MmeI	TCCRAC	7 cut(s)	621, 1488, 1638, 2064, 2416, 3129, 3811
Mph1103I	ATGCAT	2 cut(s)	3069, 3928
MroI	TCCGGA	1 cut(s)	3508
MroXI	GAANNNNTTC	1 cut(s)	2792
MslI	CAYNNNNRTG	3 cut(s)	675, 1346, 1350
MspA1I	CMGCKG	1 cut(s)	3875
MspCI	CTTAAG	3 cut(s)	467, 2912, 4204
MspI	CCGG	5 cut(s)	306, 890, 1939, 3509, 4436
MspR9I	CCNGG	9 cut(s)	20, 26, 307, 734, 763, 1709, 1940, 2648, 3089
MunI	CAATTG	1 cut(s)	2045
Mva1269I	GAATGC	7 cut(s)	691, 699, 1846, 1883, 2349, 2488, 3128
MvaI	CCWGG	7 cut(s)	20, 26, 734, 763, 1709, 2648, 3089
MvnI	CGCG	2 cut(s)	636, 638
MwoI	GCNNNNNNNGC	8 cut(s)	633, 686, 856, 1366, 2504, 3881, 4283, 4445
NciI	CCSGG	2 cut(s)	307, 1940
NcoI	CCATGG	1 cut(s)	942
NdeI	CATATG	2 cut(s)	2372, 3754
NheI	GCTAGC	1 cut(s)	4444
NlaIV	GGNNCC	6 cut(s)	940, 948, 2101, 3093, 3513, 4042
NmuCI	GTSAC	2 cut(s)	1219, 3651
NsbI	TGCGCA	1 cut(s)	1039
NsiI	ATGCAT	2 cut(s)	3069, 3928
NspI	RCATGY	6 cut(s)	1351, 2001, 2030, 2911, 3537, 4026
PaeI	GCATGC	1 cut(s)	2911
PaeR7I	CTCGAG	1 cut(s)	2715
PciI	ACATGT	1 cut(s)	1347
PciSI	GCTCTTC	2 cut(s)	617, 4471
PctI	GAATGC	7 cut(s)	691, 699, 1846, 1883, 2349, 2488, 3128
PdmI	GAANNNNTTC	1 cut(s)	2792
PfeI	GAWTC	8 cut(s)	335, 1046, 1451, 2173, 2235, 2877, 3401, 4169
PflFI	GACNNNGTC	1 cut(s)	4212
PflMI	CCANNNNNTGG	2 cut(s)	483, 2275
PfoI	TCCNGGA	1 cut(s)	2646
PmaCI	CACGTG	1 cut(s)	1043
PmlI	CACGTG	1 cut(s)	1043
Ppu21I	YACGTR	1 cut(s)	1043
PpuMI	RGGWCCY	1 cut(s)	938
PscI	ACATGT	1 cut(s)	1347
PshAI	GACNNNNGTC	1 cut(s)	3675
PsiI	TTATAA	5 cut(s)	1028, 1122, 2940, 3020, 3465
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	7 cut(s)	18, 24, 732, 761, 1707, 2646, 3087
PspCI	CACGTG	1 cut(s)	1043
PspFI	CCCAGC	3 cut(s)	428, 3561, 4156
PspGI	CCWGG	7 cut(s)	18, 24, 732, 761, 1707, 2646, 3087
PspN4I	GGNNCC	6 cut(s)	940, 948, 2101, 3093, 3513, 4042
PspPPI	RGGWCCY	1 cut(s)	938
PspXI	VCTCGAGB	1 cut(s)	2715
PstI	CTGCAG	2 cut(s)	379, 3032
PstNI	CAGNNNCTG	1 cut(s)	3088
PsyI	GACNNNGTC	1 cut(s)	4212
PvuII	CAGCTG	1 cut(s)	3875
RseI	CAYNNNNRTG	3 cut(s)	675, 1346, 1350
SapI	GCTCTTC	2 cut(s)	617, 4471
ScrFI	CCNGG	9 cut(s)	20, 26, 307, 734, 763, 1709, 1940, 2648, 3089
SfcI	CTRYAG	4 cut(s)	211, 375, 3028, 3424
Sfr274I	CTCGAG	1 cut(s)	2715
SinI	GGWCC	7 cut(s)	892, 938, 1674, 1936, 2561, 3506, 4135
SlaI	CTCGAG	1 cut(s)	2715
SmiMI	CAYNNNNRTG	3 cut(s)	675, 1346, 1350
SmlI	CTYRAG	6 cut(s)	467, 1590, 2715, 2912, 4139, 4204
SmoI	CTYRAG	6 cut(s)	467, 1590, 2715, 2912, 4139, 4204
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	1 cut(s)	2911
SsiI	CCGC	7 cut(s)	1064, 1485, 2281, 2505, 2524, 2873, 3189
SspMI	CTAG	9 cut(s)	147, 180, 1457, 1640, 2529, 3186, 3680, 3734, 4445
StyD4I	CCNGG	9 cut(s)	18, 24, 305, 732, 761, 1707, 1938, 2646, 3087
StyI	CCWWGG	9 cut(s)	438, 477, 942, 1456, 1566, 2103, 2124, 3930, 4385
TaaI	ACNGT	9 cut(s)	790, 1100, 1441, 1514, 2464, 2575, 2950, 3428, 4465
TaiI	ACGT	4 cut(s)	1045, 1226, 2968, 4213
TaqI	TCGA	1 cut(s)	2716
TatI	WGTACW	5 cut(s)	798, 2153, 3024, 3987, 4010
TauI	GCSGC	2 cut(s)	1487, 2507
TfiI	GAWTC	8 cut(s)	335, 1046, 1451, 2173, 2235, 2877, 3401, 4169
TscAI	CASTG	9 cut(s)	677, 1224, 1444, 1519, 1927, 2209, 2469, 3475, 4020
TseFI	GTSAC	2 cut(s)	1219, 3651
Tsp45I	GTSAC	2 cut(s)	1219, 3651
TspGWI	ACGGA	1 cut(s)	3590
TspRI	CASTG	9 cut(s)	677, 1224, 1444, 1519, 1927, 2209, 2469, 3475, 4020
Tth111I	GACNNNGTC	1 cut(s)	4212
Van91I	CCANNNNNTGG	2 cut(s)	483, 2275
Vha464I	CTTAAG	3 cut(s)	467, 2912, 4204
VpaK11BI	GGWCC	7 cut(s)	892, 938, 1674, 1936, 2561, 3506, 4135
XagI	CCTNNNNNAGG	1 cut(s)	1751
XapI	RAATTY	8 cut(s)	661, 952, 2090, 2166, 2631, 3241, 3474, 4271
XbaI	TCTAGA	1 cut(s)	3679
XceI	RCATGY	6 cut(s)	1351, 2001, 2030, 2911, 3537, 4026
XhoI	CTCGAG	1 cut(s)	2715
XmaJI	CCTAGG	1 cut(s)	1456
XmiI	GTMKAC	5 cut(s)	1074, 1984, 2958, 3040, 3669
XmnI	GAANNNNTTC	1 cut(s)	2792
XspI	CTAG	9 cut(s)	147, 180, 1457, 1640, 2529, 3186, 3680, 3734, 4445
Zsp2I	ATGCAT	2 cut(s)	3069, 3928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.