Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Forward (+)

20075288 .. 20080690

Gene Structure 5403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007705

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4470 bp

ATGACATTCACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATTCAGAGTCCCCACTCTCATCTTCTTCTTCTTCTTCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGTTCTCTAACTCAAGTACCTTCTACTTCTAGTTCTGGTAGTTCTGAGCAGCCTAATGATAGTAACACTAGTCAAATTAACAATAACAAGAAATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTATCAGAAACTTACCCTTCACCTCCTCAGAACCAATTCACCCCTCTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGATTCTGAGAGCAAAGAGGAAGGTGATGGTAATGTGGGTTTTGCAGCATCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAATCTGATGAGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGACGAGCTGGCAGCGGGCGTTGGAGGTGTACGAGTGGCTGAATTTGCGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAAGTGTACAATGCAATGATGGGTGTGTATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTAATGCGTGAGCGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTCAGGTCAGGTGCCCTGGTACCAAATTTGGCTATTGAACTTTTGAATGAAGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGCGGCTGTGCTCGTGAATCCAATTTGGAGGAAGCGGTGAAGGTGTACACTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTATATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAAGGGTTTTTCCCAGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCCGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTACGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACATACACTGTTTTGATAGATTCCTTTGGGAAAGAAAATAAGATTACAGAGGCCGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAGCCTACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGTTGGCAAACAGGTGGAGGCTCAAGAAACATTTGATTGCATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATATCTTTCTCAGGTCCAATGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTGATGTTGCGTGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTCGGTGGTATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTAAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCCTATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCCGGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAGTAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCTGATATATTGTAAAATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGACATGAAAGGCATTCTTTTTGACAGTATCTCCATATATGTTGATGTTATTGAAGTATATGGGAAATTGCAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCTGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCAGGCTTTAATTGTTGATGGGAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTCAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCTGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGATCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGAATTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCGGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATATTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTATCGTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCGAAGCTGAACACTTACAAAAGCTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACGATGATGAAACTATATAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGTAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAGCTGGTTTAGATCTGGATACATTACCCTATAGTTCAGTTATAGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACAAGCTTCATAAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAAGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTGAATGCTTTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCATGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGATGCATCCTTAGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACATTAAAGGCATGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCCCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCACTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAGAGAGAAAGGGTTATTCAAGCTGATATTGAGGGGAGGAAAGAGAAGTTGGAAAAAATGAGAAAGAGGGGAATTGTTGACCCGAGTAGGAATTTACCTGATGCAGAGAAGTCCAACATCGTGGTTGAAGTTCAAAAGTTGGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1490

Amino Acids

167.88

Weight (kDa)

6.07

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	240 - 367	5.6e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	270 - 314	1.3e-09	PPR repeat family
PPR	PF01535	272 - 301	8.5e-06	PPR repeat
PPR_2	PF13041	303 - 354	3.5e-10	PPR repeat family
PPR_long	PF17177	326 - 465	2.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	329 - 388	7.8e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	337 - 369	4e-09	PPR repeat
PPR_2	PF13041	340 - 385	9.5e-15	PPR repeat family
PPR	PF01535	343 - 373	8.4e-07	PPR repeat
PPR_1	PF12854	372 - 403	1.6e-06	PPR repeat
PPR_2	PF13041	379 - 424	3.6e-12	PPR repeat family
PPR	PF01535	379 - 408	4.7e-08	PPR repeat
PPR_3	PF13812	399 - 459	2.3e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	434 - 494	5.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	446 - 493	2.1e-14	PPR repeat family
PPR_long	PF17177	464 - 564	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	480 - 508	4.9e-06	PPR repeat
PPR_2	PF13041	480 - 529	8.6e-13	PPR repeat family
PPR_3	PF13812	504 - 562	9.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	519 - 561	4.5e-07	PPR repeat family
TPR_24	PF23276	888 - 995	1.9e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	918 - 1012	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	958 - 1015	3.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	968 - 1017	3.8e-07	PPR repeat family
PPR_long	PF17177	988 - 1073	5.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	1007 - 1052	8.4e-10	PPR repeat family
PPR	PF01535	1007 - 1036	5e-07	PPR repeat
PPR_3	PF13812	1026 - 1072	4.5e-07	Pentatricopeptide repeat domain
PPR	PF01535	1042 - 1071	7.5e-06	PPR repeat
TPR_24	PF23276	1122 - 1217	8.3e-07	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1046, 1140, 3483
Acc65I	GGTACC	1 cut(s)	964
AccB1I	GGYRCC	2 cut(s)	956, 964
AccB7I	CCANNNNNTGG	2 cut(s)	501, 2293
AccBSI	CCGCTC	2 cut(s)	895, 2542
AccI	GTMKAC	5 cut(s)	2002, 2976, 3058, 3687, 4093
AciI	CCGC	8 cut(s)	652, 895, 1050, 1082, 1503, 2542, 2891, 2983
AclWI	GGATC	2 cut(s)	3177, 3228
AdeI	CACNNNGTG	3 cut(s)	848, 3620, 4088
AfiI	CCNNNNNNNGG	7 cut(s)	310, 501, 797, 1771, 2293, 3068, 3766
AflII	CTTAAG	2 cut(s)	485, 4222
AflIII	ACRYGT	1 cut(s)	1365
AhlI	ACTAGT	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	4229
AjnI	CCWGG	7 cut(s)	24, 750, 779, 960, 1725, 2664, 3105
AjuI	GAANNNNNNNTTGG	2 cut(s)	4352, 4384
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	6 cut(s)	926, 950, 1694, 1827, 2321, 3972
AlwI	GGATC	2 cut(s)	3177, 3228
AlwNI	CAGNNNCTG	1 cut(s)	3106
Ama87I	CYCGRG	3 cut(s)	2324, 2733, 4402
AoxI	GGCC	7 cut(s)	248, 443, 1016, 1381, 1500, 3103, 4280
ArsI	GACNNNNNNTTYG	2 cut(s)	1499, 1531
AseI	ATTAAT	1 cut(s)	3032
Asp700I	GAANNNNTTC	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	964
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	9 cut(s)	444, 1381, 1692, 1954, 2579, 3103, 3757, 4153, 4281
AsuC2I	CCSGG	6 cut(s)	322, 1295, 1412, 1958, 2052, 3782
AvaI	CYCGRG	3 cut(s)	2324, 2733, 4402
AvaII	GGWCC	5 cut(s)	1692, 1954, 2579, 3757, 4153
AxyI	CCTNAGG	1 cut(s)	3378
BaeGI	GKGCMC	1 cut(s)	961
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BanI	GGYRCC	2 cut(s)	956, 964
BauI	CACGAG	1 cut(s)	1059
BbsI	GAAGAC	1 cut(s)	3726
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	3177
BceAI	ACGGC	1 cut(s)	4057
BciT130I	CCWGG	7 cut(s)	26, 752, 781, 962, 1727, 2666, 3107
BciVI	GTATCC	1 cut(s)	3424
BclI	TGATCA	4 cut(s)	1390, 1903, 2823, 3928
BcnI	CCSGG	6 cut(s)	322, 1295, 1412, 1958, 2052, 3782
BcoDI	GTCTC	6 cut(s)	926, 950, 1694, 1827, 2321, 3972
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	6 cut(s)	150, 189, 1658, 2547, 3698, 3707
BfmI	CTRYAG	4 cut(s)	220, 1987, 3046, 3442
BfrI	CTTAAG	2 cut(s)	485, 4222
BfuI	GTATCC	1 cut(s)	3424
BglII	AGATCT	1 cut(s)	3424
BlpI	GCTNAGC	2 cut(s)	786, 1188
Bme18I	GGWCC	5 cut(s)	1692, 1954, 2579, 3757, 4153
BmeT110I	CYCGRG	3 cut(s)	2324, 2733, 4402
BmgBI	CACGTC	1 cut(s)	4229
BmgT120I	GGNCC	9 cut(s)	444, 1381, 1692, 1954, 2579, 3103, 3757, 4153, 4281
BmiI	GGNNCC	5 cut(s)	958, 966, 2056, 3111, 3531
BmrI	ACTGGG	2 cut(s)	421, 3874
BmuI	ACTGGG	2 cut(s)	421, 3874
BoxI	GACNNNNGTC	1 cut(s)	3693
BpiI	GAAGAC	1 cut(s)	3726
BpmI	CTGGAG	1 cut(s)	3548
Bpu10I	CCTNAGC	1 cut(s)	3177
Bpu1102I	GCTNAGC	2 cut(s)	786, 1188
BpuEI	CTTGAG	3 cut(s)	117, 1593, 4178
BpuMI	CCSGG	6 cut(s)	322, 1295, 1412, 1958, 2052, 3782
BsaAI	YACGTR	1 cut(s)	3620
BsaBI	GATNNNNATC	1 cut(s)	3462
BsaJI	CCNNGG	7 cut(s)	24, 456, 495, 780, 960, 2121, 2142
BsaXI	ACNNNNNCTCC	4 cut(s)	994, 1024, 2369, 2399
Bsc4I	CCNNNNNNNGG	7 cut(s)	310, 501, 797, 1771, 2293, 3068, 3766
Bse1I	ACTGG	8 cut(s)	427, 695, 1938, 1956, 3493, 3813, 3869, 4305
Bse21I	CCTNAGG	1 cut(s)	3378
Bse3DI	GCAATG	4 cut(s)	831, 1719, 2085, 2874
Bse8I	GATNNNNATC	1 cut(s)	3462
BseBI	CCWGG	7 cut(s)	26, 752, 781, 962, 1727, 2666, 3107
BseDI	CCNNGG	7 cut(s)	24, 456, 495, 780, 960, 2121, 2142
BseGI	GGATG	7 cut(s)	322, 583, 2863, 3215, 3944, 3946, 4220
BseJI	GATNNNNATC	1 cut(s)	3462
BseLI	CCNNNNNNNGG	7 cut(s)	310, 501, 797, 1771, 2293, 3068, 3766
BseMI	GCAATG	4 cut(s)	831, 1719, 2085, 2874
BseNI	ACTGG	8 cut(s)	427, 695, 1938, 1956, 3493, 3813, 3869, 4305
BseRI	GAGGAG	2 cut(s)	276, 1015
BseSI	GKGCMC	1 cut(s)	961
BseYI	CCCAGC	3 cut(s)	446, 3579, 4174
BsgI	GTGCAG	1 cut(s)	2857
BshFI	GGCC	7 cut(s)	250, 445, 1018, 1383, 1502, 3105, 4282
BshNI	GGYRCC	2 cut(s)	956, 964
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiHKCI	CYCGRG	3 cut(s)	2324, 2733, 4402
BsiSI	CCGG	6 cut(s)	321, 1294, 1411, 1957, 2052, 3781
BslFI	GGGAC	5 cut(s)	7, 40, 1427, 3562, 4009
BslI	CCNNNNNNNGG	7 cut(s)	310, 501, 797, 1771, 2293, 3068, 3766
BsmAI	GTCTC	6 cut(s)	926, 950, 1694, 1827, 2321, 3972
BsmBI	CGTCTC	1 cut(s)	950
BsmFI	GGGAC	5 cut(s)	7, 40, 1427, 3562, 4009
BsmI	GAATGC	7 cut(s)	709, 717, 1864, 1901, 2367, 2506, 3751
BsnI	GGCC	7 cut(s)	250, 445, 1018, 1383, 1502, 3105, 4282
BsoBI	CYCGRG	3 cut(s)	2324, 2733, 4402
Bsp1286I	GDGCHC	2 cut(s)	961, 1060
Bsp1407I	TGTACA	2 cut(s)	816, 1092
Bsp1720I	GCTNAGC	2 cut(s)	786, 1188
BspACI	CCGC	8 cut(s)	652, 895, 1050, 1082, 1503, 2542, 2891, 2983
BspANI	GGCC	7 cut(s)	250, 445, 1018, 1383, 1502, 3105, 4282
BspLI	GGNNCC	5 cut(s)	958, 966, 2056, 3111, 3531
BspMAI	CTGCAG	1 cut(s)	3050
BspPI	GGATC	2 cut(s)	3177, 3228
BspT107I	GGYRCC	2 cut(s)	956, 964
BspTI	CTTAAG	2 cut(s)	485, 4222
BsrBI	CCGCTC	2 cut(s)	895, 2542
BsrDI	GCAATG	4 cut(s)	831, 1719, 2085, 2874
BsrGI	TGTACA	2 cut(s)	816, 1092
BsrI	ACTGG	8 cut(s)	427, 695, 1938, 1956, 3493, 3813, 3869, 4305
BssECI	CCNNGG	7 cut(s)	24, 456, 495, 780, 960, 2121, 2142
BssNAI	GTATAC	1 cut(s)	2977
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	4 cut(s)	456, 495, 2121, 2142
Bst1107I	GTATAC	1 cut(s)	2977
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	7 cut(s)	26, 752, 781, 962, 1727, 2666, 3107
Bst4CI	ACNGT	9 cut(s)	808, 1118, 1459, 1532, 2381, 2482, 2593, 2968, 3695
Bst6I	CTCTTC	5 cut(s)	1302, 1554, 1879, 2880, 3186
BstAFI	CTTAAG	2 cut(s)	485, 4222
BstAPI	GCANNNNNTGC	1 cut(s)	874
BstAUI	TGTACA	2 cut(s)	816, 1092
BstBAI	YACGTR	1 cut(s)	3620
BstC8I	GCNNGC	9 cut(s)	647, 654, 717, 1385, 2028, 2352, 2544, 2619, 4042
BstENI	CCTNNNNNAGG	1 cut(s)	1769
BstF5I	GGATG	7 cut(s)	322, 583, 2863, 3215, 3944, 3946, 4220
BstHHI	GCGC	1 cut(s)	687
BstMAI	GTCTC	6 cut(s)	926, 950, 1694, 1827, 2321, 3972
BstMWI	GCNNNNNNNGC	9 cut(s)	682, 704, 874, 1384, 2123, 2431, 2522, 3899, 4301
BstNI	CCWGG	7 cut(s)	26, 752, 781, 962, 1727, 2666, 3107
BstNSI	RCATGY	4 cut(s)	1369, 2019, 2048, 4044
BstPAI	GACNNNNGTC	1 cut(s)	3693
BstSFI	CTRYAG	4 cut(s)	220, 1987, 3046, 3442
BstSLI	GKGCMC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	3726
BstX2I	RGATCY	1 cut(s)	3424
BstXI	CCANNNNNNTGG	1 cut(s)	4441
BstYI	RGATCY	1 cut(s)	3424
BstZ17I	GTATAC	1 cut(s)	2977
Bsu36I	CCTNAGG	1 cut(s)	3378
BsuI	GTATCC	1 cut(s)	3424
BsuRI	GGCC	7 cut(s)	250, 445, 1018, 1383, 1502, 3105, 4282
BtrI	CACGTC	1 cut(s)	4229
BtsCI	GGATG	7 cut(s)	322, 583, 2863, 3215, 3944, 3946, 4220
BtsI	GCAGTG	1 cut(s)	1242
Cac8I	GCNNGC	9 cut(s)	647, 654, 717, 1385, 2028, 2352, 2544, 2619, 4042
CaiI	CAGNNNCTG	1 cut(s)	3106
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	9 cut(s)	444, 1381, 1692, 1954, 2579, 3103, 3757, 4153, 4281
DraI	TTTAAA	1 cut(s)	4249
DraIII	CACNNNGTG	3 cut(s)	848, 3620, 4088
Eam1104I	CTCTTC	5 cut(s)	1302, 1554, 1879, 2880, 3186
EarI	CTCTTC	5 cut(s)	1302, 1554, 1879, 2880, 3186
Eco130I	CCWWGG	4 cut(s)	456, 495, 2121, 2142
Eco32I	GATATC	1 cut(s)	1681
Eco47I	GGWCC	5 cut(s)	1692, 1954, 2579, 3757, 4153
Eco81I	CCTNAGG	1 cut(s)	3378
Eco88I	CYCGRG	3 cut(s)	2324, 2733, 4402
EcoNI	CCTNNNNNAGG	1 cut(s)	1769
EcoO109I	RGGNCCY	2 cut(s)	3103, 3757
EcoRI	GAATTC	3 cut(s)	1434, 2920, 3492
EcoRII	CCWGG	7 cut(s)	24, 750, 779, 960, 1725, 2664, 3105
EcoRV	GATATC	1 cut(s)	1681
EcoT14I	CCWWGG	4 cut(s)	456, 495, 2121, 2142
EcoT22I	ATGCAT	2 cut(s)	3087, 3946
ErhI	CCWWGG	4 cut(s)	456, 495, 2121, 2142
Esp3I	CGTCTC	1 cut(s)	950
FalI	AAGNNNNNCTT	6 cut(s)	2355, 2387, 2985, 3017, 4288, 4320
FaqI	GGGAC	5 cut(s)	7, 40, 1427, 3562, 4009
FauI	CCCGC	4 cut(s)	645, 888, 2535, 2884
FauNDI	CATATG	1 cut(s)	3772
FbaI	TGATCA	4 cut(s)	1390, 1903, 2823, 3928
FblI	GTMKAC	5 cut(s)	2002, 2976, 3058, 3687, 4093
FokI	GGATG	7 cut(s)	329, 590, 2870, 3222, 3931, 3953, 4227
FspBI	CTAG	6 cut(s)	150, 189, 1658, 2547, 3698, 3707
GlaI	GCGC	1 cut(s)	686
GsaI	CCCAGC	3 cut(s)	450, 3583, 4178
GsuI	CTGGAG	1 cut(s)	3548
HaeIII	GGCC	7 cut(s)	250, 445, 1018, 1383, 1502, 3105, 4282
HapII	CCGG	6 cut(s)	321, 1294, 1411, 1957, 2052, 3781
HhaI	GCGC	1 cut(s)	687
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HincII	GTYRAC	2 cut(s)	1121, 4399
HindII	GTYRAC	2 cut(s)	1121, 4399
HindIII	AAGCTT	6 cut(s)	756, 2226, 2514, 3133, 3553, 4265
HpaII	CCGG	6 cut(s)	321, 1294, 1411, 1957, 2052, 3781
HpyCH4III	ACNGT	9 cut(s)	808, 1118, 1459, 1532, 2381, 2482, 2593, 2968, 3695
HpyCH4IV	ACGT	2 cut(s)	3619, 4228
HpyF10VI	GCNNNNNNNGC	9 cut(s)	682, 704, 874, 1384, 2123, 2431, 2522, 3899, 4301
HpySE526I	ACGT	2 cut(s)	3619, 4228
HspAI	GCGC	1 cut(s)	685
KpnI	GGTACC	1 cut(s)	968
Ksp22I	TGATCA	4 cut(s)	1390, 1903, 2823, 3928
LmnI	GCTCC	2 cut(s)	2053, 3529
MaeI	CTAG	6 cut(s)	150, 189, 1658, 2547, 3698, 3707
MaeII	ACGT	2 cut(s)	3619, 4228
MaeIII	GTNAC	5 cut(s)	182, 1237, 1447, 2741, 3669
MbiI	CCGCTC	2 cut(s)	895, 2542
MflI	RGATCY	1 cut(s)	3424
MhlI	GDGCHC	2 cut(s)	961, 1060
MlyI	GAGTC	9 cut(s)	62, 522, 928, 1220, 2606, 3677, 3858, 3974, 4130
MmeI	TCCRAC	8 cut(s)	639, 1506, 2082, 2622, 3147, 3829, 4350, 4458
Mph1103I	ATGCAT	2 cut(s)	3087, 3946
MroXI	GAANNNNTTC	1 cut(s)	296
MslI	CAYNNNNRTG	4 cut(s)	14, 693, 1100, 1421
MspA1I	CMGCKG	3 cut(s)	652, 2983, 3893
MspCI	CTTAAG	2 cut(s)	485, 4222
MspI	CCGG	6 cut(s)	321, 1294, 1411, 1957, 2052, 3781
Mva1269I	GAATGC	7 cut(s)	709, 717, 1864, 1901, 2367, 2506, 3751
MvaI	CCWGG	7 cut(s)	26, 752, 781, 962, 1727, 2666, 3107
MwoI	GCNNNNNNNGC	9 cut(s)	682, 704, 874, 1384, 2123, 2431, 2522, 3899, 4301
NciI	CCSGG	6 cut(s)	322, 1295, 1412, 1958, 2052, 3782
NdeI	CATATG	1 cut(s)	3772
NlaIV	GGNNCC	5 cut(s)	958, 966, 2056, 3111, 3531
NmuCI	GTSAC	2 cut(s)	1237, 3669
NsiI	ATGCAT	2 cut(s)	3087, 3946
NspI	RCATGY	4 cut(s)	1369, 2019, 2048, 4044
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	4044
PaeR7I	CTCGAG	1 cut(s)	2733
PciI	ACATGT	1 cut(s)	1365
PctI	GAATGC	7 cut(s)	709, 717, 1864, 1901, 2367, 2506, 3751
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	7 cut(s)	344, 350, 1064, 1469, 2191, 2253, 4187
PflFI	GACNNNGTC	1 cut(s)	4230
PflMI	CCANNNNNTGG	2 cut(s)	501, 2293
PfoI	TCCNGGA	2 cut(s)	1293, 2664
PleI	GAGTC	9 cut(s)	61, 521, 927, 1219, 2605, 3676, 3857, 3973, 4130
PpsI	GAGTC	9 cut(s)	61, 521, 927, 1219, 2605, 3676, 3857, 3973, 4130
Ppu21I	YACGTR	1 cut(s)	3620
PpuMI	RGGWCCY	1 cut(s)	3757
PscI	ACATGT	1 cut(s)	1365
PshAI	GACNNNNGTC	1 cut(s)	3693
PshBI	ATTAAT	1 cut(s)	3032
PsiI	TTATAA	3 cut(s)	1046, 1140, 3483
Psp5II	RGGWCCY	1 cut(s)	3757
Psp6I	CCWGG	7 cut(s)	24, 750, 779, 960, 1725, 2664, 3105
PspFI	CCCAGC	3 cut(s)	446, 3579, 4174
PspGI	CCWGG	7 cut(s)	24, 750, 779, 960, 1725, 2664, 3105
PspN4I	GGNNCC	5 cut(s)	958, 966, 2056, 3111, 3531
PspPI	GGNCC	9 cut(s)	444, 1381, 1692, 1954, 2579, 3103, 3757, 4153, 4281
PspPPI	RGGWCCY	1 cut(s)	3757
PspXI	VCTCGAGB	1 cut(s)	2733
PstI	CTGCAG	1 cut(s)	3050
PstNI	CAGNNNCTG	1 cut(s)	3106
PsuI	RGATCY	1 cut(s)	3424
PsyI	GACNNNGTC	1 cut(s)	4230
PvuII	CAGCTG	1 cut(s)	3893
RseI	CAYNNNNRTG	4 cut(s)	14, 693, 1100, 1421
Sau96I	GGNCC	9 cut(s)	444, 1381, 1692, 1954, 2579, 3103, 3757, 4153, 4281
SchI	GAGTC	9 cut(s)	62, 522, 928, 1220, 2606, 3677, 3858, 3974, 4130
SduI	GDGCHC	2 cut(s)	961, 1060
SfcI	CTRYAG	4 cut(s)	220, 1987, 3046, 3442
Sfr274I	CTCGAG	1 cut(s)	2733
SinI	GGWCC	5 cut(s)	1692, 1954, 2579, 3757, 4153
SlaI	CTCGAG	1 cut(s)	2733
SmiMI	CAYNNNNRTG	4 cut(s)	14, 693, 1100, 1421
SmlI	CTYRAG	6 cut(s)	132, 485, 1608, 2733, 4157, 4222
SmoI	CTYRAG	6 cut(s)	132, 485, 1608, 2733, 4157, 4222
SpeI	ACTAGT	1 cut(s)	188
SphI	GCATGC	1 cut(s)	4044
SsiI	CCGC	8 cut(s)	652, 895, 1050, 1082, 1503, 2542, 2891, 2983
SspMI	CTAG	6 cut(s)	150, 189, 1658, 2547, 3698, 3707
StyI	CCWWGG	4 cut(s)	456, 495, 2121, 2142
TaaI	ACNGT	9 cut(s)	808, 1118, 1459, 1532, 2381, 2482, 2593, 2968, 3695
TaiI	ACGT	2 cut(s)	3622, 4231
TaqI	TCGA	4 cut(s)	329, 1178, 1432, 2734
TaqII	GACCGA	1 cut(s)	3213
TatI	WGTACW	7 cut(s)	589, 816, 1092, 2171, 3042, 4005, 4028
TauI	GCSGC	2 cut(s)	1053, 1505
TfiI	GAWTC	7 cut(s)	344, 350, 1064, 1469, 2191, 2253, 4187
TseFI	GTSAC	2 cut(s)	1237, 3669
Tsp45I	GTSAC	2 cut(s)	1237, 3669
TspGWI	ACGGA	1 cut(s)	1386
Tth111I	GACNNNGTC	1 cut(s)	4230
Van91I	CCANNNNNTGG	2 cut(s)	501, 2293
Vha464I	CTTAAG	2 cut(s)	485, 4222
VpaK11BI	GGWCC	5 cut(s)	1692, 1954, 2579, 3757, 4153
VspI	ATTAAT	1 cut(s)	3032
XagI	CCTNNNNNAGG	1 cut(s)	1769
XbaI	TCTAGA	1 cut(s)	3697
XceI	RCATGY	4 cut(s)	1369, 2019, 2048, 4044
XhoI	CTCGAG	1 cut(s)	2733
XmiI	GTMKAC	5 cut(s)	2002, 2976, 3058, 3687, 4093
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	6 cut(s)	150, 189, 1658, 2547, 3698, 3707
Zsp2I	ATGCAT	2 cut(s)	3087, 3946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.