Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

44731541 .. 44737669

Gene Structure 6129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4494 bp

ATGACATTCACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATTCAGAGTCCCCACTCTCATCTTCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGCTCTCTAACTCAACTACCTTCTACTTCTAGTTCTGGTAGTTCTGAGCAGCCTAGTGATAGTAGCACTAGTCAAATTAACAACAACAAGAAATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCAGACACTTACCCTTCACCTCCTCAGACCCAATTCACCCCTGTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGAGTCTGAGAGCAAAGAGGAAGATAATGGGGATGTGGGTTTTGCAGCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAGTCTGATGAGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGAAGAGCTGGCAGCGGGCGTTGGAGGTGTACGAGTGGCTGAATTTGCGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAAGTGTACAATGCAATGATGGGTGTATATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTAATGCGTGAGCGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTTAGGTCAGGTGCCATGGTACCAAATTTGGCTATTGAACTTTTGAATGAGGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGCGGCTGTGCTCGTGAATCCAATTTGGAGGAGGCGGTGAAGGTATACACTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCAGTATATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAAGGGTTTTTCCCAGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCAGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTATGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACTTACACTGTTTTGATAGATTCCCTTGGGAAAGAAAATAAGATTACAGAGGCCGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGCTGGCAAACAGGTGGAGGCTCAAGAAACATTTGATTGCATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATATCTTTCTCAGGTCCAACGAGACAAAGAAGGCAATGACATTATACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGCGGGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTTGGAGGCATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCCGCTAAAATGTTAAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCCGGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAGTAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCTGATTTATTGTAAAATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCTGGCAGACATGAAAGGCATTCTTTTTGACAGTATCTCCATATATGTTGATGTTATTGAAGTATATGGGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCAGGCTTTAATTGTTGATGGGAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCTGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGATCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCTGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGACTTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCGGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATATTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTGTCGTTGATGCATGAAATGAGAAGGCAGAGCCTGGAACCGAAGCTGAACACTTACAAAAGCTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACGATGATGAAACTATATAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAACTGGTTTAGATCTGGATACATTACCCTATAGTTCAGTTATTGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACATGCTTCATAAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAGGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTCAATGCTCTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCGTGATGTGTTCAGGGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGCAACTCTCTTTCTCCTCTGTAGTTTCGATGCATCCTTGGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACATTAAAGGCATGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCCCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCACTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAAAGAGAAAGGGTTATTCAAGCTGATATTGAGGGAAGGAAAGAGAAGTTAGAAAAAATGAGAAAGAGGGGAATTGTTGACCCGAGTAGGAATTTACCTGATGCAGAGAAGTCCAACATTGTGGTTGAAGTTCAAAAGTTGGCGAGGTGGAGTTGCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1497

Amino Acids

168.94

Weight (kDa)

6.15

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	234 - 362	4.1e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	265 - 309	1.3e-09	PPR repeat family
PPR	PF01535	267 - 296	8.5e-06	PPR repeat
PPR_2	PF13041	298 - 349	2.9e-10	PPR repeat family
PPR_long	PF17177	321 - 460	2.8e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	324 - 383	7.8e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	4.1e-09	PPR repeat
PPR_2	PF13041	335 - 380	9.6e-15	PPR repeat family
PPR	PF01535	338 - 368	8.4e-07	PPR repeat
PPR_1	PF12854	367 - 398	1.6e-06	PPR repeat
PPR_2	PF13041	374 - 419	3.9e-12	PPR repeat family
PPR	PF01535	374 - 403	4.7e-08	PPR repeat
PPR_3	PF13812	394 - 454	2.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	429 - 489	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	441 - 488	1.8e-14	PPR repeat family
PPR_long	PF17177	459 - 559	4.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	475 - 503	8.2e-06	PPR repeat
PPR_2	PF13041	475 - 524	1e-12	PPR repeat family
PPR_3	PF13812	499 - 557	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	514 - 556	2.6e-07	PPR repeat family
TPR_24	PF23276	883 - 990	1.4e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	911 - 1007	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	953 - 1010	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	963 - 1007	2.5e-06	PPR repeat family
PPR_long	PF17177	983 - 1079	2.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	998 - 1047	6.9e-10	PPR repeat family
PPR	PF01535	1002 - 1029	2.7e-06	PPR repeat
PPR_3	PF13812	1021 - 1067	6.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	1037 - 1066	7.6e-06	PPR repeat
TPR_24	PF23276	1117 - 1212	2.7e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1031, 1125, 3468
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	2 cut(s)	941, 949
AccB7I	CCANNNNNTGG	2 cut(s)	486, 2278
AccBSI	CCGCTC	2 cut(s)	880, 2527
AccI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4105
AclWI	GGATC	2 cut(s)	3162, 3213
AdeI	CACNNNGTG	3 cut(s)	833, 3605, 4100
AfaI	GTAC	8 cut(s)	576, 653, 803, 951, 2158, 3029, 4019, 4042
AfiI	CCNNNNNNNGG	8 cut(s)	298, 486, 782, 1536, 1756, 2278, 3053, 3751
AflII	CTTAAG	2 cut(s)	470, 4234
AflIII	ACRYGT	1 cut(s)	1350
AhlI	ACTAGT	1 cut(s)	176
AjiI	CACGTC	1 cut(s)	4241
AjnI	CCWGG	6 cut(s)	24, 735, 764, 1710, 2649, 3090
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	1045
Alw26I	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3984
AlwI	GGATC	2 cut(s)	3162, 3213
AlwNI	CAGNNNCTG	1 cut(s)	3091
Ama87I	CYCGRG	3 cut(s)	2309, 2718, 4414
AoxI	GGCC	6 cut(s)	236, 428, 1001, 1366, 1485, 4292
ArsI	GACNNNNNNTTYG	2 cut(s)	1484, 1516
AseI	ATTAAT	1 cut(s)	3017
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	8 cut(s)	429, 1366, 1677, 1939, 2564, 3742, 4165, 4293
AsuC2I	CCSGG	5 cut(s)	310, 1397, 1943, 2037, 3767
AvaI	CYCGRG	3 cut(s)	2309, 2718, 4414
AvaII	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4165
AxyI	CCTNAGG	1 cut(s)	3363
BanI	GGYRCC	2 cut(s)	941, 949
BauI	CACGAG	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	3711
Bbv12I	GWGCWC	1 cut(s)	1045
BbvCI	CCTCAGC	1 cut(s)	3162
BceAI	ACGGC	1 cut(s)	4069
BciT130I	CCWGG	6 cut(s)	26, 737, 766, 1712, 2651, 3092
BciVI	GTATCC	1 cut(s)	3409
BclI	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
BcnI	CCSGG	5 cut(s)	310, 1397, 1943, 2037, 3767
BcoDI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3984
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	7 cut(s)	138, 162, 177, 1643, 2532, 3683, 3692
BfmI	CTRYAG	4 cut(s)	208, 3031, 3427, 3943
BfrI	CTTAAG	2 cut(s)	470, 4234
BfuI	GTATCC	1 cut(s)	3409
BglII	AGATCT	1 cut(s)	3409
BlpI	GCTNAGC	2 cut(s)	771, 1173
Bme18I	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4165
BmeT110I	CYCGRG	3 cut(s)	2309, 2718, 4414
BmgBI	CACGTC	1 cut(s)	4241
BmgT120I	GGNCC	8 cut(s)	429, 1366, 1677, 1939, 2564, 3742, 4165, 4293
BmiI	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
BmrI	ACTGGG	2 cut(s)	406, 3859
BmuI	ACTGGG	2 cut(s)	406, 3859
BoxI	GACNNNNGTC	1 cut(s)	3678
BpiI	GAAGAC	1 cut(s)	3711
BpmI	CTGGAG	2 cut(s)	3533, 3758
Bpu10I	CCTNAGC	1 cut(s)	3162
Bpu1102I	GCTNAGC	2 cut(s)	771, 1173
BpuEI	CTTGAG	3 cut(s)	1578, 2954, 4190
BpuMI	CCSGG	5 cut(s)	310, 1397, 1943, 2037, 3767
BsaAI	YACGTR	1 cut(s)	3605
BsaBI	GATNNNNATC	1 cut(s)	3447
BsaJI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3960
BsaXI	ACNNNNNCTCC	4 cut(s)	979, 1009, 2354, 2384
Bsc4I	CCNNNNNNNGG	8 cut(s)	298, 486, 782, 1536, 1756, 2278, 3053, 3751
Bse1I	ACTGG	9 cut(s)	412, 680, 1923, 1941, 3406, 3478, 3798, 3854, 4317
Bse21I	CCTNAGG	1 cut(s)	3363
Bse3DI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
Bse8I	GATNNNNATC	1 cut(s)	3447
BseBI	CCWGG	6 cut(s)	26, 737, 766, 1712, 2651, 3092
BseDI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3960
BseGI	GGATG	7 cut(s)	310, 373, 568, 2848, 3200, 3956, 4232
BseJI	GATNNNNATC	1 cut(s)	3447
BseLI	CCNNNNNNNGG	8 cut(s)	298, 486, 782, 1536, 1756, 2278, 3053, 3751
BseMI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
BseNI	ACTGG	9 cut(s)	412, 680, 1923, 1941, 3406, 3478, 3798, 3854, 4317
BseRI	GAGGAG	4 cut(s)	264, 1000, 1076, 3929
BseYI	CCCAGC	3 cut(s)	431, 3564, 4186
BsgI	GTGCAG	1 cut(s)	2842
BshFI	GGCC	6 cut(s)	238, 430, 1003, 1368, 1487, 4294
BshNI	GGYRCC	2 cut(s)	941, 949
BsiHKAI	GWGCWC	1 cut(s)	1045
BsiHKCI	CYCGRG	3 cut(s)	2309, 2718, 4414
BsiSI	CCGG	5 cut(s)	309, 1396, 1942, 2037, 3766
BslFI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 4021
BslI	CCNNNNNNNGG	8 cut(s)	298, 486, 782, 1536, 1756, 2278, 3053, 3751
BsmAI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3984
BsmFI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 4021
BsmI	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
BsnI	GGCC	6 cut(s)	238, 430, 1003, 1368, 1487, 4294
BsoBI	CYCGRG	3 cut(s)	2309, 2718, 4414
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp1407I	TGTACA	1 cut(s)	801
Bsp1720I	GCTNAGC	2 cut(s)	771, 1173
Bsp19I	CCATGG	1 cut(s)	945
BspANI	GGCC	6 cut(s)	238, 430, 1003, 1368, 1487, 4294
BspLI	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
BspMAI	CTGCAG	1 cut(s)	3035
BspPI	GGATC	2 cut(s)	3162, 3213
BspQI	GCTCTTC	1 cut(s)	620
BspT107I	GGYRCC	2 cut(s)	941, 949
BspTI	CTTAAG	2 cut(s)	470, 4234
BsrBI	CCGCTC	2 cut(s)	880, 2527
BsrDI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	9 cut(s)	412, 680, 1923, 1941, 3406, 3478, 3798, 3854, 4317
BssECI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3960
BssNAI	GTATAC	2 cut(s)	1078, 2962
BssSI	CACGAG	1 cut(s)	1044
BssT1I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3960
Bst1107I	GTATAC	2 cut(s)	1078, 2962
Bst2BI	CACGAG	1 cut(s)	1044
Bst2UI	CCWGG	6 cut(s)	26, 737, 766, 1712, 2651, 3092
Bst6I	CTCTTC	6 cut(s)	620, 1287, 1539, 1864, 2865, 3171
BstAFI	CTTAAG	2 cut(s)	470, 4234
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	3605
BstDSI	CCRYGG	1 cut(s)	945
BstENI	CCTNNNNNAGG	1 cut(s)	1754
BstF5I	GGATG	7 cut(s)	310, 373, 568, 2848, 3200, 3956, 4232
BstHHI	GCGC	1 cut(s)	672
BstMAI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3984
BstMWI	GCNNNNNNNGC	8 cut(s)	667, 689, 859, 1369, 2108, 2507, 3884, 4313
BstNI	CCWGG	6 cut(s)	26, 737, 766, 1712, 2651, 3092
BstNSI	RCATGY	5 cut(s)	1354, 2004, 2033, 3540, 4056
BstPAI	GACNNNNGTC	1 cut(s)	3678
BstSFI	CTRYAG	4 cut(s)	208, 3031, 3427, 3943
BstV2I	GAAGAC	1 cut(s)	3711
BstX2I	RGATCY	1 cut(s)	3409
BstXI	CCANNNNNNTGG	2 cut(s)	1355, 4453
BstYI	RGATCY	1 cut(s)	3409
BstZ17I	GTATAC	2 cut(s)	1078, 2962
Bsu36I	CCTNAGG	1 cut(s)	3363
BsuI	GTATCC	1 cut(s)	3409
BsuRI	GGCC	6 cut(s)	238, 430, 1003, 1368, 1487, 4294
BtgI	CCRYGG	1 cut(s)	945
BtrI	CACGTC	1 cut(s)	4241
BtsCI	GGATG	7 cut(s)	310, 373, 568, 2848, 3200, 3956, 4232
BtsI	GCAGTG	1 cut(s)	1227
CaiI	CAGNNNCTG	1 cut(s)	3091
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	8 cut(s)	429, 1366, 1677, 1939, 2564, 3742, 4165, 4293
Csp6I	GTAC	8 cut(s)	575, 652, 802, 950, 2157, 3028, 4018, 4041
CviQI	GTAC	8 cut(s)	575, 652, 802, 950, 2157, 3028, 4018, 4041
DraI	TTTAAA	2 cut(s)	2674, 4261
DraIII	CACNNNGTG	3 cut(s)	833, 3605, 4100
Eam1104I	CTCTTC	6 cut(s)	620, 1287, 1539, 1864, 2865, 3171
EarI	CTCTTC	6 cut(s)	620, 1287, 1539, 1864, 2865, 3171
Eco130I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3960
Eco32I	GATATC	1 cut(s)	1666
Eco47I	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4165
Eco81I	CCTNAGG	1 cut(s)	3363
Eco88I	CYCGRG	3 cut(s)	2309, 2718, 4414
EcoNI	CCTNNNNNAGG	1 cut(s)	1754
EcoO109I	RGGNCCY	1 cut(s)	3742
EcoRI	GAATTC	3 cut(s)	1419, 2905, 3477
EcoRII	CCWGG	6 cut(s)	24, 735, 764, 1710, 2649, 3090
EcoRV	GATATC	1 cut(s)	1666
EcoT14I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3960
EcoT22I	ATGCAT	2 cut(s)	3072, 3958
ErhI	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3960
FalI	AAGNNNNNCTT	6 cut(s)	2340, 2372, 2970, 3002, 4300, 4332
FaqI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 4021
FauI	CCCGC	4 cut(s)	630, 873, 1761, 2520
FauNDI	CATATG	1 cut(s)	3757
FbaI	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
FblI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4105
FokI	GGATG	7 cut(s)	317, 380, 575, 2855, 3207, 3943, 4239
FspBI	CTAG	7 cut(s)	138, 162, 177, 1643, 2532, 3683, 3692
GlaI	GCGC	1 cut(s)	671
GsaI	CCCAGC	3 cut(s)	435, 3568, 4190
GsuI	CTGGAG	2 cut(s)	3533, 3758
HaeIII	GGCC	6 cut(s)	238, 430, 1003, 1368, 1487, 4294
HapII	CCGG	5 cut(s)	309, 1396, 1942, 2037, 3766
HhaI	GCGC	1 cut(s)	672
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	2 cut(s)	1106, 4411
HindII	GTYRAC	2 cut(s)	1106, 4411
HindIII	AAGCTT	5 cut(s)	741, 2211, 2499, 3118, 4277
HpaII	CCGG	5 cut(s)	309, 1396, 1942, 2037, 3766
HpyCH4IV	ACGT	2 cut(s)	3604, 4240
HpyF10VI	GCNNNNNNNGC	8 cut(s)	667, 689, 859, 1369, 2108, 2507, 3884, 4313
HpySE526I	ACGT	2 cut(s)	3604, 4240
HspAI	GCGC	1 cut(s)	670
KpnI	GGTACC	1 cut(s)	953
Ksp22I	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	2 cut(s)	2038, 3514
MaeI	CTAG	7 cut(s)	138, 162, 177, 1643, 2532, 3683, 3692
MaeII	ACGT	2 cut(s)	3604, 4240
MaeIII	GTNAC	5 cut(s)	1222, 1432, 2726, 3397, 3654
MbiI	CCGCTC	2 cut(s)	880, 2527
MflI	RGATCY	1 cut(s)	3409
MhlI	GDGCHC	1 cut(s)	1045
MlyI	GAGTC	9 cut(s)	62, 347, 507, 913, 1205, 2591, 3662, 3986, 4142
MmeI	TCCRAC	9 cut(s)	624, 1491, 1704, 1813, 2067, 2607, 3132, 3814, 4470
Mph1103I	ATGCAT	2 cut(s)	3072, 3958
MslI	CAYNNNNRTG	5 cut(s)	14, 678, 1085, 1353, 1406
MspA1I	CMGCKG	3 cut(s)	637, 2968, 3878
MspCI	CTTAAG	2 cut(s)	470, 4234
MspI	CCGG	5 cut(s)	309, 1396, 1942, 2037, 3766
Mva1269I	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
MvaI	CCWGG	6 cut(s)	26, 737, 766, 1712, 2651, 3092
MwoI	GCNNNNNNNGC	8 cut(s)	667, 689, 859, 1369, 2108, 2507, 3884, 4313
NciI	CCSGG	5 cut(s)	310, 1397, 1943, 2037, 3767
NcoI	CCATGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	3757
NlaIV	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
NmuCI	GTSAC	2 cut(s)	1222, 3654
NsiI	ATGCAT	2 cut(s)	3072, 3958
NspI	RCATGY	5 cut(s)	1354, 2004, 2033, 3540, 4056
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	4056
PaeR7I	CTCGAG	1 cut(s)	2718
PciI	ACATGT	1 cut(s)	1350
PciSI	GCTCTTC	1 cut(s)	620
PctI	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
PfeI	GAWTC	6 cut(s)	332, 1049, 1454, 2176, 2238, 4199
PflFI	GACNNNGTC	1 cut(s)	4242
PflMI	CCANNNNNTGG	2 cut(s)	486, 2278
PfoI	TCCNGGA	1 cut(s)	2649
PleI	GAGTC	9 cut(s)	61, 346, 506, 912, 1204, 2590, 3661, 3985, 4142
PpsI	GAGTC	9 cut(s)	61, 346, 506, 912, 1204, 2590, 3661, 3985, 4142
Ppu21I	YACGTR	1 cut(s)	3605
PpuMI	RGGWCCY	1 cut(s)	3742
PscI	ACATGT	1 cut(s)	1350
PshAI	GACNNNNGTC	1 cut(s)	3678
PshBI	ATTAAT	1 cut(s)	3017
PsiI	TTATAA	3 cut(s)	1031, 1125, 3468
Psp5II	RGGWCCY	1 cut(s)	3742
Psp6I	CCWGG	6 cut(s)	24, 735, 764, 1710, 2649, 3090
PspFI	CCCAGC	3 cut(s)	431, 3564, 4186
PspGI	CCWGG	6 cut(s)	24, 735, 764, 1710, 2649, 3090
PspN4I	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
PspPI	GGNCC	8 cut(s)	429, 1366, 1677, 1939, 2564, 3742, 4165, 4293
PspPPI	RGGWCCY	1 cut(s)	3742
PspXI	VCTCGAGB	1 cut(s)	2718
PstI	CTGCAG	1 cut(s)	3035
PstNI	CAGNNNCTG	1 cut(s)	3091
PsuI	RGATCY	1 cut(s)	3409
PsyI	GACNNNGTC	1 cut(s)	4242
PvuII	CAGCTG	1 cut(s)	3878
RsaI	GTAC	8 cut(s)	576, 653, 803, 951, 2158, 3029, 4019, 4042
RsaNI	GTAC	8 cut(s)	575, 652, 802, 950, 2157, 3028, 4018, 4041
RseI	CAYNNNNRTG	5 cut(s)	14, 678, 1085, 1353, 1406
SapI	GCTCTTC	1 cut(s)	620
Sau96I	GGNCC	8 cut(s)	429, 1366, 1677, 1939, 2564, 3742, 4165, 4293
SchI	GAGTC	9 cut(s)	62, 347, 507, 913, 1205, 2591, 3662, 3986, 4142
SduI	GDGCHC	1 cut(s)	1045
SfcI	CTRYAG	4 cut(s)	208, 3031, 3427, 3943
Sfr274I	CTCGAG	1 cut(s)	2718
SinI	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4165
SlaI	CTCGAG	1 cut(s)	2718
SmiMI	CAYNNNNRTG	5 cut(s)	14, 678, 1085, 1353, 1406
SmlI	CTYRAG	6 cut(s)	470, 1593, 2718, 2933, 4169, 4234
SmoI	CTYRAG	6 cut(s)	470, 1593, 2718, 2933, 4169, 4234
SpeI	ACTAGT	1 cut(s)	176
SphI	GCATGC	1 cut(s)	4056
SspMI	CTAG	7 cut(s)	138, 162, 177, 1643, 2532, 3683, 3692
StyI	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3960
TaiI	ACGT	2 cut(s)	3607, 4243
TaqI	TCGA	5 cut(s)	317, 1163, 1417, 2719, 3951
TaqII	GACCGA	1 cut(s)	3198
TatI	WGTACW	6 cut(s)	574, 801, 2156, 3027, 4017, 4040
TauI	GCSGC	4 cut(s)	1038, 1490, 1898, 2510
TfiI	GAWTC	6 cut(s)	332, 1049, 1454, 2176, 2238, 4199
TseFI	GTSAC	2 cut(s)	1222, 3654
Tsp45I	GTSAC	2 cut(s)	1222, 3654
Tth111I	GACNNNGTC	1 cut(s)	4242
Van91I	CCANNNNNTGG	2 cut(s)	486, 2278
Vha464I	CTTAAG	2 cut(s)	470, 4234
VpaK11BI	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4165
VspI	ATTAAT	1 cut(s)	3017
XagI	CCTNNNNNAGG	1 cut(s)	1754
XbaI	TCTAGA	1 cut(s)	3682
XceI	RCATGY	5 cut(s)	1354, 2004, 2033, 3540, 4056
XhoI	CTCGAG	1 cut(s)	2718
XmiI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4105
XspI	CTAG	7 cut(s)	138, 162, 177, 1643, 2532, 3683, 3692
Zsp2I	ATGCAT	2 cut(s)	3072, 3958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.