Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

36189157 .. 36194892

Gene Structure 5736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1304500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4458 bp

ATGGCGTTCTCAGGAGTGCTGACCGTCACCACGTCACCCTTACTGCATTCAAGCTCGATGTCCTCCTCACCTTCAATTTCCAAGGTATGCAGCAAACCAACTTCTCTAATTTCTTGCTCCTTGACACCTACGCCGCCGTCTGCCACCGATTCTACTTCTAGATTTTCCGTGGAGCCACCGTCTGACTCTATTACTACAACTAACGTCAAAACCGCTCAGAAATTTAGCTACAGCAGAGCCTCCCCATCAGTCAGATGGCCCCACTTGAAACTCACAGAAACTTACCCCTCACCGCCGACCCAATTCACCGTTGCTTCTCCTCCGCCGAACCATGTCGTCGGCGATTCCGCTGACGGTGGAGAGGAAGACCAGAATGTGGGTTCTGTGGGAGCTTTGGAGGAGACGAATGACGAAACCCAACAAGTGCTGGGGAGGCCGAGCAAAACCAAGGCGAAGAAAATGACGAAACTTGCTCTCAAAAGAGCAAAAGATTGGCGGGAAAGAGTGAAGCTTTTTACTGATAGGATTTTGGGGTTGAAACCCGACGAGTTTGTGGCCAATGTGTTGGATGACAGGAGAGTTCAAATGACTCCGACTGATTTTTGCTTTGTGGTGAAATGGGTAGGCCAGTCGAGCTGGCAGCGCGCATTGGAGGTGTACGAATGGTTGAATTTACGCCATTGGTACTCCCCGAATGCTCGAATGCTTGCCACTATCTTGGCTGTTCTTGGAAAGGCTAACCAAGAAGAATTGGCTGTGGAGATATTTCAAAGGGCTGAACCTGGAATTGGGAATACAGTCCAAGTGTACAATGCAATGATGGGTGTTTATGCTCGAAATGGTCGGTTTAGTAAGGTCCAAGGACTGCTCGATGTAATGCGTGAGAGAGGGTGCGAACCAGACCTTGTGAGTCTCAATACTTTGATCAATGCTCGGCTAAGGTCAGGTGCCATGACACCAAATTTGGGAATTGAACTTTTGAATGAGGTGAGAAGGGCGGGTCTTAGGCCTGATATAATCACTTATAACACTCTTATAAGTGGCTGTTCACGTGAATCTAATTTAAAGGAGGCAGTGGATGTTTACAATGACATGGAAGCACATAATTGCCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTGTATGGGAGATGTGGAGAGTCAAGCAAAGCCGAGCAGCTCTTTAAGGAATTGGAGTCGAAAGGGTTTTTCCCAGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTGATATAGAGAAAGTAAGGGATATTGGTGAAGATATGGTGAAAATGGGGTTTGGTAAAGATGAGATGACGTACAATACCATCATCCACATGTACGGAAAGCAGGGCCAGCATGATTTAGCATTTCAGGTTTACAGGGACATGAAAATGCTAGGCCGGATTCCTGATGCTGTTACCTACACTGTGTTGATAGATTTACTTGGAAAAGCAAATAAGATAACACAGGCCGCTAATGTGATGTCAGAGATGTTGGACAGTGGAGTGAAACCCACTCTTCGGACTTATAGTGCTTTGATGTGTGCATATGCCAAGGCTGGTAAACAGGTGGAGGCTCAAGAGACATTTGATTGCATGGTTAGATCGGGTATTAGACCTGATCATCTGGCATACTCCATTATGTTGGATATCTATCTAAAGGTCAATGATACAAAGAAGGCAATGGCATTGTATCACGAAATGATGCAGGGTGGTTTCATGCCAGATAATATTCTCTATGGGGTCATGCTGCGGGTTCTTGGAAAAGAGAATAAATTGGAAGGCATTGAAAAAGTGATCAGAGATATGGAAAACGTTGGTGGTATGAACCCACAAGTTATCTCTTCTATTCTTGTTAAGGGAGAATGCTATGACCAAGCTGCCAGAATGTTGAGGTTAGCTATTAGTAGTGGCTATGAACTGGACCGGGAAAATCTTTTATCTATTCTCAGCTCGTATAGTTCATGTGGAAGGCACTCAGAAGCATGTGAATTGCTTGAATTTTTTAGAGAACACGCTCCCGGTTCCACTCAACTGATAAATGAAGCACTGGTTGTCATACAATGCAAGGCTCGTGAATTTGATGCTGCCTTGGTGGAATATAGTAATACCAGGGGATTCCATTCTTTTAGTAGAAGTCCTACCATGTATGAAATTCTTATTCAAGGCTGCCAAGAGAATGAACTCTTTGGTGAAGCTTCTCAGGTTTATTCTGACATGAGATTATATGGCGTCGACCCCTCTCAACATCTTTACCAAATTATGGTGCTCATATATTGTAAGATGGGTTTCCCTGAGACAGCGCATCATTTGATTGATCAGGCAGAGACGAAGGGCATTTTATTTGACAATGTCAACATATATGTTGATGTTATTGAAGTCTATGGGAAATTGAAGCAGTGGCAGAAAGCTGAATGTTTGGTGGGAAGTCTCAGACAAAGATGTAAATCGGTGGATAGGAAGGTCTGGAATGCCTTGATACATGCTTATGCTGCAAGTGGTTGCTATGAGCGAGCTAGAGTGATATTTAACACAATGATGAGAGATGGTCCTTCCCCAACAGTAGATTCTGTTAATGGTCTTTTGCAAGCTCTGGTTGTTGATGGGAGATTGGACGAACTCTATGTTCTAATCGAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTCTTGACACTTGAAGCATTTGCTCGAGATGGTAACATATTTGAGGTAAAGAAGATATACCAAGGAATGAAGGCTGCAGGCTATTTTCCCAACATGGATTGTTTCAGGATTATGATCAAGTTATTGTGCAGGGGAAAACGAGTAATGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCAGGATTCAGGCCTGATCTCTCAATATGGAATTCTATGCTTAAGTTATATGCAGGAATTGCAGATTTCAAAAGGACAGTTAAAGTATACCAGCGGATTAAAGAGGCTGCACTTCAACCAGATGAGGATACTTATAATACTTTAATCATAATGTACTGCAAAGATCGTAGACCAGAGGAAGGTTTGTCATTGATGCATGAAATGAGAAGGCAGGGGCTAGAACCTAAGTTGGATACTTACAAAAGCTTAATTTCAGCGTTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTATTCGAAGAGTTAAGGTCAAATGGATGTAAATTGGATCGCTCATTTTATCATACCATGATGAAAATGTTTAGAAATTCAGGAGACCATGACAAAGCTGAGATGCTGTTGGCGATGATGAAAGAGGCTGGAATAGAACCCAACTCTGCCACAATGCATTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAAGAAGCTGAAAAGGTGCTTGACAATTTGAAAGTAACTGGCATAGATCTTGATACGTTACCATATAGTTCAGTTATTAGTGCTTATCTGAAGAATGGAGATTATAACATTGGAATTCAAAAGCTCAACGAGATGAAGGAAGGCGGTCTGGTGCCAGATCATAGAATTTGGACTTGTTTTATAAGGGCTGCAAGTTTGTCTCAACAAAGAAGTGAAGCTTTTATTCTCCTAAACGCACTGCGTGATGTTGGATTTGATCTTCCTATCAGGCTTGTGACCGAAAATCCTGAATTGCTAGTTTCAGAAGTAGACTGTTGTCTAGAGAAACTAGAACCCCTAGAAGACAATGCAGCCTTCAACTTTGTCAACGCATTGGAGGACCTTTTGTGGGCATATGAACTCCGAGCCACTGCTTCGTGGGTTTTCCAATTATCCGTAAAGAGAGGCATCTATAACAATAATGTGTTCAGGGTAGCTGACAAAGACTGGGGTGCTGATTTTAGAAAGTTGTCAGCTGGTTCTGCTCTTGATGCATCCTTGGAGGGTTATCCAGAGTCTCCGAAATCAGTTGTCCTGATAACGGGAACATCTGAGTACAACATGGTTTCGCTTAATAGCACCTTGAAGGCATGCCTTTGGGAGATGGGTTCACCTTTTCTGCCTTGCAAAACACGAAGCGGCCTTCTAGTAGCAAAGGCACACTCCCTCAGGATGTGGTTAAAGGATTCCCCGTTTTGCTTGGACCTTGAGTTGAAAGATGCCCCATCTCTCCCCAAATCAAACTCAATGCAGCTCATCGATGGATGCTTCCTAAGACGCGGTCTCGTTCCTGCGTTTAAAGAGATAACTGAGAAGCTTGGACTAGTGAGACCAAAGAAATTTGCTAGATTGGCTCTGCTGTCAGATGAAAAGAGAGAGAAAGTTATTGAAGCTGACATTGAGGGGAGGAAAGAGAAGTTAGAAAAAATGAAGGAAAAGGGGGAACCGAGGAGGGTGAGCAGGATTAAAAGGCTTGGGAAGAGGAAATATGTCAGACCGATGTTGTCAAATACCAAACATATTGTATCAGCAAGAAAAGCCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1486

Amino Acids

167.37

Weight (kDa)

7.07

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	236 - 364	8.3e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	267 - 311	3.1e-09	PPR repeat family
PPR	PF01535	269 - 298	9.4e-06	PPR repeat
PPR_3	PF13812	326 - 385	4.5e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 366	9.8e-09	PPR repeat
PPR_2	PF13041	337 - 382	2e-15	PPR repeat family
PPR_long	PF17177	338 - 461	3e-10	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	340 - 370	5e-07	PPR repeat
PPR_1	PF12854	369 - 400	1e-06	PPR repeat
PPR_2	PF13041	376 - 421	5.6e-12	PPR repeat family
PPR	PF01535	376 - 405	7.6e-08	PPR repeat
PPR_3	PF13812	396 - 456	7.8e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	431 - 491	3.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	443 - 489	9.1e-15	PPR repeat family
TPR_24	PF23276	449 - 574	1.4e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	460 - 575	1.3e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	477 - 526	1e-11	PPR repeat family
PPR_3	PF13812	501 - 559	1.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	516 - 557	2.4e-07	PPR repeat family
PPR_2	PF13041	551 - 595	7.9e-07	PPR repeat family
PPR_2	PF13041	829 - 872	6.2e-06	PPR repeat family
PPR_long	PF17177	913 - 1008	9.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	955 - 1013	5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	965 - 1014	1.3e-07	PPR repeat family
PPR_long	PF17177	984 - 1070	2.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	1000 - 1049	4.9e-11	PPR repeat family
PPR	PF01535	1004 - 1033	2.7e-07	PPR repeat
PPR_3	PF13812	1023 - 1082	3.3e-07	Pentatricopeptide repeat domain
PPR	PF01535	1039 - 1068	5.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	6 cut(s)	1026, 1037, 1131, 3015, 3474, 3551
AccB1I	GGYRCC	2 cut(s)	947, 3520
AccB7I	CCANNNNNTGG	2 cut(s)	376, 2284
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	4 cut(s)	2256, 2967, 3049, 3678
AccII	CGCG	2 cut(s)	645, 4188
AclI	AACGTT	1 cut(s)	1836
AclWI	GGATC	2 cut(s)	3168, 3219
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	3479
AcvI	CACGTG	1 cut(s)	1052
AcyI	GRCGYC	1 cut(s)	2253
AdeI	CACNNNGTG	1 cut(s)	3611
AfaI	GTAC	7 cut(s)	659, 686, 809, 1340, 1361, 3035, 3965
AfiI	CCNNNNNNNGG	8 cut(s)	376, 788, 965, 1542, 2284, 3059, 3757, 3949
AflII	CTTAAG	1 cut(s)	2921
AflIII	ACRYGT	1 cut(s)	1356
AhlI	ACTAGT	1 cut(s)	4231
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	781, 2132
AjuI	GAANNNNNNNTTGG	4 cut(s)	771, 803, 2572, 2604
Alw21I	GWGCWC	1 cut(s)	2292
AlwI	GGATC	2 cut(s)	3168, 3219
Ama87I	CYCGRG	1 cut(s)	2724
ArsI	GACNNNNNNTTYG	2 cut(s)	946, 978
AspLEI	GCGC	3 cut(s)	645, 647, 2326
AspS9I	GGNCC	7 cut(s)	258, 856, 1372, 1945, 2570, 3748, 4111
AsuC2I	CCSGG	2 cut(s)	1949, 2043
AsuII	TTCGAA	1 cut(s)	3180
AvaI	CYCGRG	1 cut(s)	2724
AvaII	GGWCC	5 cut(s)	856, 1945, 2570, 3748, 4111
AxyI	CCTNAGG	1 cut(s)	4076
BalI	TGGCCA	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	947, 3520
BauI	CACGAG	1 cut(s)	2094
BbrPI	CACGTG	1 cut(s)	1052
BbsI	GAAGAC	2 cut(s)	372, 3717
Bbv12I	GWGCWC	1 cut(s)	2292
BbvCI	CCTCAGC	1 cut(s)	3168
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	783, 2134
BciVI	GTATCC	2 cut(s)	3001, 3106
BclI	TGATCA	5 cut(s)	924, 1642, 1818, 2338, 2814
BcnI	CCSGG	2 cut(s)	1949, 2043
BcuI	ACTAGT	1 cut(s)	4231
BfmI	CTRYAG	2 cut(s)	229, 2775
BfrI	CTTAAG	1 cut(s)	2921
BfuI	GTATCC	2 cut(s)	3001, 3106
BglII	AGATCT	1 cut(s)	3415
Bme1390I	CCNGG	4 cut(s)	783, 1949, 2043, 2134
Bme18I	GGWCC	5 cut(s)	856, 1945, 2570, 3748, 4111
BmeT110I	CYCGRG	1 cut(s)	2724
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	7 cut(s)	258, 856, 1372, 1945, 2570, 3748, 4111
BmiI	GGNNCC	6 cut(s)	174, 260, 949, 2047, 3522, 4353
BmrFI	CCNGG	4 cut(s)	783, 1949, 2043, 2134
BmrI	ACTGGG	1 cut(s)	3865
BmuI	ACTGGG	1 cut(s)	3865
BoxI	GACNNNNGTC	1 cut(s)	3684
BpiI	GAAGAC	2 cut(s)	372, 3717
Bpu10I	CCTNAGC	2 cut(s)	938, 3168
Bpu14I	TTCGAA	1 cut(s)	3180
BpuEI	CTTGAG	3 cut(s)	1584, 3354, 4136
BpuMI	CCSGG	2 cut(s)	1949, 2043
Bsa29I	ATCGAT	1 cut(s)	4167
BsaAI	YACGTR	1 cut(s)	1052
BsaBI	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BsaHI	GRCGYC	1 cut(s)	2253
BsaI	GGTCTC	3 cut(s)	3252, 4196, 4231
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	8 cut(s)	376, 788, 965, 1542, 2284, 3059, 3757, 3949
Bse1I	ACTGG	5 cut(s)	628, 1947, 2076, 3412, 3860
Bse21I	CCTNAGG	1 cut(s)	4076
Bse3DI	GCAATG	3 cut(s)	822, 1710, 2865
Bse8I	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BseBI	CCWGG	2 cut(s)	783, 2134
BseCI	ATCGAT	1 cut(s)	4167
BseGI	GGATG	8 cut(s)	574, 1084, 1350, 2854, 3206, 3902, 4086, 4178
BseJI	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BseLI	CCNNNNNNNGG	8 cut(s)	376, 788, 965, 1542, 2284, 3059, 3757, 3949
BseMI	GCAATG	3 cut(s)	822, 1710, 2865
BseNI	ACTGG	5 cut(s)	628, 1947, 2076, 3412, 3860
BsePI	GCGCGC	1 cut(s)	643
BseRI	GAGGAG	5 cut(s)	55, 309, 413, 2672, 4372
BseYI	CCCAGC	1 cut(s)	427
BsgI	GTGCAG	2 cut(s)	2848, 2973
Bsh1236I	CGCG	2 cut(s)	645, 4188
BshNI	GGYRCC	2 cut(s)	947, 3520
BshVI	ATCGAT	1 cut(s)	4167
BsiHKAI	GWGCWC	1 cut(s)	2292
BsiHKCI	CYCGRG	1 cut(s)	2724
BsiSI	CCGG	3 cut(s)	1423, 1948, 2043
BslFI	GGGAC	1 cut(s)	1418
BslI	CCNNNNNNNGG	8 cut(s)	376, 788, 965, 1542, 2284, 3059, 3757, 3949
BsmBI	CGTCTC	2 cut(s)	395, 2342
BsmFI	GGGAC	1 cut(s)	1418
BsmI	GAATGC	5 cut(s)	46, 700, 708, 1892, 2497
Bso31I	GGTCTC	3 cut(s)	3252, 4196, 4231
BsoBI	CYCGRG	1 cut(s)	2724
Bsp119I	TTCGAA	1 cut(s)	3180
Bsp1286I	GDGCHC	1 cut(s)	2292
Bsp1407I	TGTACA	1 cut(s)	807
BspDI	ATCGAT	1 cut(s)	4167
BspFNI	CGCG	2 cut(s)	645, 4188
BspLI	GGNNCC	6 cut(s)	174, 260, 949, 2047, 3522, 4353
BspMAI	CTGCAG	1 cut(s)	2779
BspPI	GGATC	2 cut(s)	3168, 3219
BspT104I	TTCGAA	1 cut(s)	3180
BspT107I	GGYRCC	2 cut(s)	947, 3520
BspTI	CTTAAG	1 cut(s)	2921
BspTNI	GGTCTC	3 cut(s)	3252, 4196, 4231
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	822, 1710, 2865
BsrGI	TGTACA	1 cut(s)	807
BsrI	ACTGG	5 cut(s)	628, 1947, 2076, 3412, 3860
BssHII	GCGCGC	1 cut(s)	643
BssNAI	GTATAC	1 cut(s)	2968
BssNI	GRCGYC	1 cut(s)	2253
BssSI	CACGAG	1 cut(s)	2094
BssT1I	CCWWGG	7 cut(s)	81, 447, 859, 1575, 2112, 2761, 3906
Bst1107I	GTATAC	1 cut(s)	2968
Bst2BI	CACGAG	1 cut(s)	2094
Bst2UI	CCWGG	2 cut(s)	783, 2134
Bst6I	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4382
BstACI	GRCGYC	1 cut(s)	2253
BstAFI	CTTAAG	1 cut(s)	2921
BstAPI	GCANNNNNTGC	1 cut(s)	2939
BstAUI	TGTACA	1 cut(s)	807
BstBAI	YACGTR	1 cut(s)	1052
BstBI	TTCGAA	1 cut(s)	3180
BstC8I	GCNNGC	8 cut(s)	638, 645, 708, 1376, 2535, 2610, 2779, 4000
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	8 cut(s)	574, 1084, 1350, 2854, 3206, 3902, 4086, 4178
BstFNI	CGCG	2 cut(s)	645, 4188
BstHHI	GCGC	3 cut(s)	645, 647, 2326
BstNI	CCWGG	2 cut(s)	783, 2134
BstNSI	RCATGY	4 cut(s)	1360, 2010, 2507, 4002
BstPAI	GACNNNNGTC	1 cut(s)	3684
BstSCI	CCNGG	4 cut(s)	781, 1947, 2041, 2132
BstSFI	CTRYAG	2 cut(s)	229, 2775
BstUI	CGCG	2 cut(s)	645, 4188
BstV2I	GAAGAC	2 cut(s)	372, 3717
BstX2I	RGATCY	1 cut(s)	3415
BstXI	CCANNNNNNTGG	3 cut(s)	565, 718, 1666
BstYI	RGATCY	1 cut(s)	3415
BstZ17I	GTATAC	1 cut(s)	2968
Bsu15I	ATCGAT	1 cut(s)	4167
Bsu36I	CCTNAGG	1 cut(s)	4076
BsuI	GTATCC	2 cut(s)	3001, 3106
BsuTUI	ATCGAT	1 cut(s)	4167
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	3302
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	8 cut(s)	574, 1084, 1350, 2854, 3206, 3902, 4086, 4178
BtsI	GCAGTG	5 cut(s)	1080, 1233, 2426, 3605, 3777
BtsIMutI	CAGTG	8 cut(s)	1080, 1233, 1446, 1528, 2069, 2426, 3605, 3777
Cac8I	GCNNGC	8 cut(s)	638, 645, 708, 1376, 2535, 2610, 2779, 4000
CfoI	GCGC	3 cut(s)	645, 647, 2326
Cfr13I	GGNCC	7 cut(s)	258, 856, 1372, 1945, 2570, 3748, 4111
ClaI	ATCGAT	1 cut(s)	4167
CseI	GACGC	2 cut(s)	2242, 4194
Csp6I	GTAC	7 cut(s)	658, 685, 808, 1339, 1360, 3034, 3964
CviQI	GTAC	7 cut(s)	658, 685, 808, 1339, 1360, 3034, 3964
DraI	TTTAAA	3 cut(s)	1065, 2680, 4207
DraIII	CACNNNGTG	1 cut(s)	3611
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4382
EarI	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4382
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	7 cut(s)	81, 447, 859, 1575, 2112, 2761, 3906
Eco147I	AGGCCT	2 cut(s)	1009, 2893
Eco31I	GGTCTC	3 cut(s)	3252, 4196, 4231
Eco32I	GATATC	1 cut(s)	1672
Eco47I	GGWCC	5 cut(s)	856, 1945, 2570, 3748, 4111
Eco57I	CTGAAG	1 cut(s)	3479
Eco72I	CACGTG	1 cut(s)	1052
Eco81I	CCTNAGG	1 cut(s)	4076
Eco88I	CYCGRG	1 cut(s)	2724
EcoO109I	RGGNCCY	1 cut(s)	3748
EcoRI	GAATTC	2 cut(s)	2911, 3483
EcoRII	CCWGG	2 cut(s)	781, 2132
EcoRV	GATATC	1 cut(s)	1672
EcoT14I	CCWWGG	7 cut(s)	81, 447, 859, 1575, 2112, 2761, 3906
EcoT22I	ATGCAT	3 cut(s)	3078, 3333, 3904
ErhI	CCWWGG	7 cut(s)	81, 447, 859, 1575, 2112, 2761, 3906
Esp3I	CGTCTC	2 cut(s)	395, 2342
FalI	AAGNNNNNCTT	2 cut(s)	3571, 3603
FaqI	GGGAC	1 cut(s)	1418
FauI	CCCGC	3 cut(s)	489, 991, 1767
FauNDI	CATATG	2 cut(s)	1570, 3763
FbaI	TGATCA	5 cut(s)	924, 1642, 1818, 2338, 2814
FblI	GTMKAC	4 cut(s)	2256, 2967, 3049, 3678
FokI	GGATG	8 cut(s)	581, 1091, 1337, 2861, 3213, 3889, 4093, 4185
GlaI	GCGC	3 cut(s)	644, 646, 2325
GsaI	CCCAGC	1 cut(s)	431
HapII	CCGG	3 cut(s)	1423, 1948, 2043
HgaI	GACGC	2 cut(s)	2242, 4194
HhaI	GCGC	3 cut(s)	645, 647, 2326
Hin1I	GRCGYC	1 cut(s)	2253
Hin6I	GCGC	3 cut(s)	643, 645, 2324
HinP1I	GCGC	3 cut(s)	643, 645, 2324
HincII	GTYRAC	3 cut(s)	2257, 2377, 3736
HindII	GTYRAC	3 cut(s)	2257, 2377, 3736
HindIII	AAGCTT	5 cut(s)	509, 2217, 3124, 3585, 4223
HpaII	CCGG	3 cut(s)	1423, 1948, 2043
Hpy99I	CGWCG	3 cut(s)	341, 548, 2258
HpyCH4IV	ACGT	6 cut(s)	32, 204, 1051, 1337, 1836, 3425
HpySE526I	ACGT	6 cut(s)	32, 204, 1051, 1337, 1836, 3425
Hsp92I	GRCGYC	1 cut(s)	2253
HspAI	GCGC	3 cut(s)	643, 645, 2324
Ksp22I	TGATCA	5 cut(s)	924, 1642, 1818, 2338, 2814
LmnI	GCTCC	4 cut(s)	122, 172, 389, 2044
MaeII	ACGT	6 cut(s)	32, 204, 1051, 1337, 1836, 3425
MaeIII	GTNAC	8 cut(s)	25, 33, 1228, 1438, 2732, 3403, 3426, 3643
MbiI	CCGCTC	1 cut(s)	215
MflI	RGATCY	1 cut(s)	3415
MhlI	GDGCHC	1 cut(s)	2292
MlsI	TGGCCA	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	6 cut(s)	179, 583, 919, 1175, 1211, 3932
MmeI	TCCRAC	7 cut(s)	546, 617, 1497, 1647, 3090, 3138, 3598
Mox20I	TGGCCA	1 cut(s)	557
Mph1103I	ATGCAT	3 cut(s)	3078, 3333, 3904
MscI	TGGCCA	1 cut(s)	557
MslI	CAYNNNNRTG	4 cut(s)	1355, 1412, 2508, 2558
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	3 cut(s)	350, 2974, 3884
MspCI	CTTAAG	1 cut(s)	2921
MspI	CCGG	3 cut(s)	1423, 1948, 2043
MspR9I	CCNGG	4 cut(s)	783, 1949, 2043, 2134
Mva1269I	GAATGC	5 cut(s)	46, 700, 708, 1892, 2497
MvaI	CCWGG	2 cut(s)	783, 2134
MvnI	CGCG	2 cut(s)	645, 4188
NciI	CCSGG	2 cut(s)	1949, 2043
NdeI	CATATG	2 cut(s)	1570, 3763
NlaIV	GGNNCC	6 cut(s)	174, 260, 949, 2047, 3522, 4353
NmeAIII	GCCGAG	3 cut(s)	462, 913, 1204
NmuCI	GTSAC	4 cut(s)	25, 33, 1228, 3643
NsiI	ATGCAT	3 cut(s)	3078, 3333, 3904
NspI	RCATGY	4 cut(s)	1360, 2010, 2507, 4002
NspV	TTCGAA	1 cut(s)	3180
PaeI	GCATGC	1 cut(s)	4002
PaeR7I	CTCGAG	1 cut(s)	2724
PauI	GCGCGC	1 cut(s)	643
PceI	AGGCCT	2 cut(s)	1009, 2893
PciI	ACATGT	1 cut(s)	1356
PctI	GAATGC	5 cut(s)	46, 700, 708, 1892, 2497
PfeI	GAWTC	8 cut(s)	149, 344, 1055, 1426, 2139, 2588, 2886, 4094
PflFI	GACNNNGTC	2 cut(s)	2372, 4188
PflMI	CCANNNNNTGG	2 cut(s)	376, 2284
PleI	GAGTC	6 cut(s)	179, 583, 918, 1174, 1210, 3931
PmaCI	CACGTG	1 cut(s)	1052
PmlI	CACGTG	1 cut(s)	1052
PpsI	GAGTC	6 cut(s)	179, 583, 918, 1174, 1210, 3931
Ppu21I	YACGTR	1 cut(s)	1052
PpuMI	RGGWCCY	1 cut(s)	3748
PscI	ACATGT	1 cut(s)	1356
PshAI	GACNNNNGTC	1 cut(s)	3684
PsiI	TTATAA	6 cut(s)	1026, 1037, 1131, 3015, 3474, 3551
Psp1406I	AACGTT	1 cut(s)	1836
Psp5II	RGGWCCY	1 cut(s)	3748
Psp6I	CCWGG	2 cut(s)	781, 2132
PspCI	CACGTG	1 cut(s)	1052
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	781, 2132
PspN4I	GGNNCC	6 cut(s)	174, 260, 949, 2047, 3522, 4353
PspPI	GGNCC	7 cut(s)	258, 856, 1372, 1945, 2570, 3748, 4111
PspPPI	RGGWCCY	1 cut(s)	3748
PstI	CTGCAG	1 cut(s)	2779
PsuI	RGATCY	1 cut(s)	3415
PsyI	GACNNNGTC	2 cut(s)	2372, 4188
PteI	GCGCGC	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	3884
RsaI	GTAC	7 cut(s)	659, 686, 809, 1340, 1361, 3035, 3965
RsaNI	GTAC	7 cut(s)	658, 685, 808, 1339, 1360, 3034, 3964
RseI	CAYNNNNRTG	4 cut(s)	1355, 1412, 2508, 2558
SalI	GTCGAC	1 cut(s)	2255
Sau96I	GGNCC	7 cut(s)	258, 856, 1372, 1945, 2570, 3748, 4111
SchI	GAGTC	6 cut(s)	179, 583, 919, 1175, 1211, 3932
ScrFI	CCNGG	4 cut(s)	783, 1949, 2043, 2134
SduI	GDGCHC	1 cut(s)	2292
SfcI	CTRYAG	2 cut(s)	229, 2775
Sfr274I	CTCGAG	1 cut(s)	2724
SfuI	TTCGAA	1 cut(s)	3180
SinI	GGWCC	5 cut(s)	856, 1945, 2570, 3748, 4111
SlaI	CTCGAG	1 cut(s)	2724
SmiMI	CAYNNNNRTG	4 cut(s)	1355, 1412, 2508, 2558
SmlI	CTYRAG	5 cut(s)	1599, 2724, 2921, 3369, 4115
SmoI	CTYRAG	5 cut(s)	1599, 2724, 2921, 3369, 4115
SpeI	ACTAGT	1 cut(s)	4231
SphI	GCATGC	1 cut(s)	4002
SseBI	AGGCCT	2 cut(s)	1009, 2893
SspI	AATATT	1 cut(s)	1753
StuI	AGGCCT	2 cut(s)	1009, 2893
StyD4I	CCNGG	4 cut(s)	781, 1947, 2041, 2132
StyI	CCWWGG	7 cut(s)	81, 447, 859, 1575, 2112, 2761, 3906
TaiI	ACGT	6 cut(s)	35, 207, 1054, 1340, 1839, 3428
TaqII	GACCGA	2 cut(s)	3662, 4420
TatI	WGTACW	3 cut(s)	807, 3033, 3963
TauI	GCSGC	3 cut(s)	136, 1496, 4050
TfiI	GAWTC	8 cut(s)	149, 344, 1055, 1426, 2139, 2588, 2886, 4094
TscAI	CASTG	8 cut(s)	1080, 1233, 1453, 1528, 2076, 2426, 3612, 3784
TseFI	GTSAC	4 cut(s)	25, 33, 1228, 3643
Tsp45I	GTSAC	4 cut(s)	25, 33, 1228, 3643
TspGWI	ACGGA	3 cut(s)	157, 1377, 3793
TspRI	CASTG	8 cut(s)	1080, 1233, 1453, 1528, 2076, 2426, 3612, 3784
Tth111I	GACNNNGTC	2 cut(s)	2372, 4188
Van91I	CCANNNNNTGG	2 cut(s)	376, 2284
Vha464I	CTTAAG	1 cut(s)	2921
VpaK11BI	GGWCC	5 cut(s)	856, 1945, 2570, 3748, 4111
XbaI	TCTAGA	2 cut(s)	158, 3688
XceI	RCATGY	4 cut(s)	1360, 2010, 2507, 4002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	2724
XmiI	GTMKAC	4 cut(s)	2256, 2967, 3049, 3678
Zsp2I	ATGCAT	3 cut(s)	3078, 3333, 3904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.