RchiOBHm_Chr4g0421271

Pentatricopeptide repeat-containing protein At3g18110

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015414
Physical Location & Seq
Reverse (-)
46879653 .. 46887638
7986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39093

Sequence Viewer

Length: 4530 bp
ATGACATTCACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATTCAGAGTCCCCACTCTCATCTTCTTCTCCTTCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGCTCTCTAACTCAAGTACCTTCTACTTCTAGTTCTGGTAGTTCTGAGCAGCCTAATGATAGTAACACTAGTCAAATTAACAACAACAAGAGATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCAGAAACTTACCCTTCACCTCCTCAGACCCAATTCACCCCTCTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGAGTCTGAGAGCAAAGAGGAAGATAATGGTGATGTGGGTTTTGCAGCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAGGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAATCTGATGAGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGAAGAGCTGGCAGCGCGCGTTGGAGGTGTACGAGTGGCTGAATTTGTGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAGGTGTACAATGCAATGATGGGTGTGTATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTAATGCGTGAGAGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTCAGGTCAGGTGCCATGGTACCAAATTTGGCTATTGAACTTTTGAATGAGGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACCTACAATACTCTTATAAGCGGCTGTGCTCGGGAATCCAATTTGGAGGAGGCCGTGAAGGTATACGCTGACATGGAAGGACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTTTATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAAGGGTTTTTCCCTGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCCGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTATGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACGTACACTGTTTTGATAGATTCCCTTGGCAAAGAAAATAAGATTACAGAGGCTGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGCTGGCAAACAAGTGGAGGCTCAAGAAACATTTGATTGCATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATATCTTTCTCAGGTCCAACGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGCGGGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTCGGTGGTATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTAAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCCGGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAATAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAAATATGGTGCTGATATATTGTAAAATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGACATGAAAGGCATTCTTTTTGACAGTATCTCCATATATGTTGATGTTATTGAAGTATATGGGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCAGGCTTTAATTGTTGATGGGAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCTGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGATCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGAATTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCAGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATATTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTGTCGTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCGAAGCTGAACACTTACAAAAGCTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACGATGATGAAACTATTTAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAACTGGTTTAGATCTGGATACGTTACCCTATAGTTCAGTTATTGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACATGCTTCATAAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAGGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTCAATGCTCTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCGTGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGCAACTCTCTTTCTCCTCTGTAGTTTCGATGCATCCTTGGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAACAGTACATTAAAGGCGTGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCCCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCGCCAGCTCTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGACCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAAAGAGAAAGGGTTATTCAAGCTGATATCGAGGGAAGGAAAGAGAAGTTAGAAAAAATGAGAAAGAGGGGAATTGTTGACCCGAGTAGGGTGAGCAGGATTAGGAAGCTTAGAAAGAGGACATGTATAAGACCGTCCATGTTATCAAACACCAAACAAATTGCATCAAAAAGAAGAGCTTTGGATTAG

Protein Analysis

1509

Amino Acids

170.39

Weight (kDa)

6.69

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 237 - 365 4.4e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 268 - 312 1.3e-09 PPR repeat family
PPR PF01535 270 - 299 8.6e-06 PPR repeat
PPR_2 PF13041 301 - 352 2.9e-10 PPR repeat family
PPR_long PF17177 324 - 463 5.2e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 327 - 386 8e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 335 - 367 8.3e-09 PPR repeat
PPR_2 PF13041 338 - 383 1.3e-14 PPR repeat family
PPR PF01535 341 - 371 5.2e-07 PPR repeat
PPR_1 PF12854 370 - 401 1.6e-06 PPR repeat
PPR_2 PF13041 377 - 422 4e-12 PPR repeat family
PPR PF01535 377 - 406 4.8e-08 PPR repeat
PPR_3 PF13812 397 - 457 2.4e-07 Pentatricopeptide repeat domain
PPR_3 PF13812 432 - 492 1.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 444 - 491 1.8e-14 PPR repeat family
PPR_long PF17177 462 - 562 3.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 478 - 506 8.3e-06 PPR repeat
PPR_2 PF13041 478 - 527 1e-12 PPR repeat family
PPR_3 PF13812 502 - 560 1.1e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 517 - 559 2.6e-07 PPR repeat family
TPR_24 PF23276 886 - 994 1.7e-07 Fungal tetratrico peptide repeats
PPR_long PF17177 915 - 1010 2.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 956 - 1013 9.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 966 - 1010 9.6e-07 PPR repeat family
PPR_long PF17177 986 - 1071 5.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 1001 - 1050 1.1e-10 PPR repeat family
PPR PF01535 1005 - 1034 5e-07 PPR repeat
PPR_3 PF13812 1024 - 1083 7.2e-08 Pentatricopeptide repeat domain
PPR PF01535 1040 - 1069 7.6e-06 PPR repeat
TPR_24 PF23276 1120 - 1215 2.5e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18110
fragaria_vesca FvH4_4g17300 FvH4_4g17300
malus_domestica MD07G1304500.v1.1
prunus_persica Prupe.6G174500_v2.0.a1
pyrus_communis pycom07g27730
rosa_chinensis RchiOBHm_Chr4g0421271
rosa_laevigata RLG00000007705
rosa_multiflora Rmu_sc0009290.1_g000019
rosa_roxburghii Rroxscaffold_5G00363500
rosa_rugosa Rorug04G0169600
rosa_samantha Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana Rw4G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1040, 1134, 3477
AasI GACNNNNNNGTC 1 cut(s) 1110
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 2 cut(s) 950, 958
AccB7I CCANNNNNTGG 2 cut(s) 495, 2287
AccBSI CCGCTC 1 cut(s) 2536
AccI GTMKAC 6 cut(s) 1086, 1996, 2970, 3052, 3681, 4114
AccII CGCG 2 cut(s) 648, 650
AciI CCGC 5 cut(s) 1044, 1777, 2517, 2536, 2885
AclWI GGATC 2 cut(s) 3171, 3222
AcsI RAATTY 8 cut(s) 673, 964, 1428, 2102, 2914, 3253, 3486, 4310
AdeI CACNNNGTG 3 cut(s) 842, 3614, 4109
AfiI CCNNNNNNNGG 9 cut(s) 307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4429
AflII CTTAAG 2 cut(s) 479, 4243
AflIII ACRYGT 2 cut(s) 1359, 4463
AhlI ACTAGT 1 cut(s) 185
AjiI CACGTC 1 cut(s) 4250
AjnI CCWGG 8 cut(s) 24, 449, 744, 773, 804, 1719, 2658, 3099
AleI CACNNNNGTG 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 1054
Alw26I GTCTC 7 cut(s) 920, 944, 1688, 1821, 2315, 3993, 4294
AlwI GGATC 2 cut(s) 3171, 3222
AlwNI CAGNNNCTG 2 cut(s) 1496, 3100
Ama87I CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
AoxI GGCC 6 cut(s) 245, 437, 1010, 1074, 1375, 3097
ApoI RAATTY 8 cut(s) 673, 964, 1428, 2102, 2914, 3253, 3486, 4310
ArsI GACNNNNNNTTYG 2 cut(s) 1493, 1525
AseI ATTAAT 1 cut(s) 3026
Asp718I GGTACC 1 cut(s) 958
AspLEI GCGC 3 cut(s) 648, 650, 4195
AspS9I GGNCC 8 cut(s) 438, 1375, 1686, 1948, 2573, 3097, 3751, 4174
AsuC2I CCSGG 6 cut(s) 319, 1289, 1406, 1952, 2046, 3776
AvaI CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
AvaII GGWCC 5 cut(s) 1686, 1948, 2573, 3751, 4174
AxyI CCTNAGG 1 cut(s) 3372
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BanI GGYRCC 2 cut(s) 950, 958
BbsI GAAGAC 1 cut(s) 3720
Bbv12I GWGCWC 1 cut(s) 1054
BbvCI CCTCAGC 1 cut(s) 3171
BceAI ACGGC 2 cut(s) 1061, 4078
BciT130I CCWGG 8 cut(s) 26, 451, 746, 775, 806, 1721, 2660, 3101
BciVI GTATCC 1 cut(s) 3418
BclI TGATCA 4 cut(s) 1384, 1897, 2817, 3922
BcnI CCSGG 6 cut(s) 319, 1289, 1406, 1952, 2046, 3776
BcoDI GTCTC 7 cut(s) 920, 944, 1688, 1821, 2315, 3993, 4294
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 6 cut(s) 147, 186, 1652, 2541, 3692, 3701
BfmI CTRYAG 4 cut(s) 217, 3040, 3436, 3952
BfrI CTTAAG 2 cut(s) 479, 4243
BfuI GTATCC 1 cut(s) 3418
BglII AGATCT 1 cut(s) 3418
BlpI GCTNAGC 2 cut(s) 780, 1182
Bme18I GGWCC 5 cut(s) 1686, 1948, 2573, 3751, 4174
BmeT110I CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
BmgBI CACGTC 1 cut(s) 4250
BmgT120I GGNCC 8 cut(s) 438, 1375, 1686, 1948, 2573, 3097, 3751, 4174
BmiI GGNNCC 5 cut(s) 952, 960, 2050, 3105, 3525
BmrI ACTGGG 2 cut(s) 415, 3868
BmuI ACTGGG 2 cut(s) 415, 3868
BoxI GACNNNNGTC 1 cut(s) 3687
BpiI GAAGAC 1 cut(s) 3720
BpmI CTGGAG 2 cut(s) 3542, 3767
Bpu10I CCTNAGC 1 cut(s) 3171
Bpu1102I GCTNAGC 2 cut(s) 780, 1182
BpuEI CTTGAG 3 cut(s) 114, 1587, 4199
BpuMI CCSGG 6 cut(s) 319, 1289, 1406, 1952, 2046, 3776
BsaAI YACGTR 2 cut(s) 1446, 3614
BsaBI GATNNNNATC 1 cut(s) 3456
BsaI GGTCTC 1 cut(s) 4294
BsaJI CCNNGG 9 cut(s) 24, 450, 489, 774, 954, 1468, 2115, 2136, 3969
BsaXI ACNNNNNCTCC 4 cut(s) 988, 1018, 2363, 2393
Bsc4I CCNNNNNNNGG 9 cut(s) 307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4429
Bse1I ACTGG 9 cut(s) 421, 689, 1932, 1950, 3415, 3487, 3807, 3863, 4326
Bse21I CCTNAGG 1 cut(s) 3372
Bse3DI GCAATG 4 cut(s) 825, 1713, 2079, 2868
Bse8I GATNNNNATC 1 cut(s) 3456
BseBI CCWGG 8 cut(s) 26, 451, 746, 775, 806, 1721, 2660, 3101
BseDI CCNNGG 9 cut(s) 24, 450, 489, 774, 954, 1468, 2115, 2136, 3969
BseGI GGATG 6 cut(s) 319, 577, 2857, 3209, 3965, 4241
BseJI GATNNNNATC 1 cut(s) 3456
BseLI CCNNNNNNNGG 9 cut(s) 307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4429
BseMI GCAATG 4 cut(s) 825, 1713, 2079, 2868
BseNI ACTGG 9 cut(s) 421, 689, 1932, 1950, 3415, 3487, 3807, 3863, 4326
BsePI GCGCGC 1 cut(s) 646
BseRI GAGGAG 4 cut(s) 273, 1009, 1085, 3938
BseYI CCCAGC 2 cut(s) 440, 3573
BsgI GTGCAG 1 cut(s) 2851
Bsh1236I CGCG 2 cut(s) 648, 650
BshFI GGCC 6 cut(s) 247, 439, 1012, 1076, 1377, 3099
BshNI GGYRCC 2 cut(s) 950, 958
BsiHKAI GWGCWC 1 cut(s) 1054
BsiHKCI CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
BsiSI CCGG 6 cut(s) 318, 1288, 1405, 1951, 2046, 3775
BslFI GGGAC 5 cut(s) 7, 40, 1421, 3556, 4030
BslI CCNNNNNNNGG 9 cut(s) 307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4429
BsmAI GTCTC 7 cut(s) 920, 944, 1688, 1821, 2315, 3993, 4294
BsmBI CGTCTC 1 cut(s) 944
BsmFI GGGAC 5 cut(s) 7, 40, 1421, 3556, 4030
BsmI GAATGC 6 cut(s) 703, 711, 1858, 1895, 2361, 2500
BsnI GGCC 6 cut(s) 247, 439, 1012, 1076, 1377, 3099
Bso31I GGTCTC 1 cut(s) 4294
BsoBI CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp1407I TGTACA 1 cut(s) 810
Bsp1720I GCTNAGC 2 cut(s) 780, 1182
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 5 cut(s) 1044, 1777, 2517, 2536, 2885
BspANI GGCC 6 cut(s) 247, 439, 1012, 1076, 1377, 3099
BspFNI CGCG 2 cut(s) 648, 650
BspLI GGNNCC 5 cut(s) 952, 960, 2050, 3105, 3525
BspMAI CTGCAG 1 cut(s) 3044
BspPI GGATC 2 cut(s) 3171, 3222
BspQI GCTCTTC 2 cut(s) 629, 4510
BspT107I GGYRCC 2 cut(s) 950, 958
BspTI CTTAAG 2 cut(s) 479, 4243
BspTNI GGTCTC 1 cut(s) 4294
BsrBI CCGCTC 1 cut(s) 2536
BsrDI GCAATG 4 cut(s) 825, 1713, 2079, 2868
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 9 cut(s) 421, 689, 1932, 1950, 3415, 3487, 3807, 3863, 4326
BssECI CCNNGG 9 cut(s) 24, 450, 489, 774, 954, 1468, 2115, 2136, 3969
BssHII GCGCGC 1 cut(s) 646
BssNAI GTATAC 2 cut(s) 1087, 2971
BssT1I CCWWGG 6 cut(s) 489, 954, 1468, 2115, 2136, 3969
Bst1107I GTATAC 2 cut(s) 1087, 2971
Bst2UI CCWGG 8 cut(s) 26, 451, 746, 775, 806, 1721, 2660, 3101
Bst6I CTCTTC 7 cut(s) 629, 1296, 1548, 1873, 2874, 3180, 4510
BstAFI CTTAAG 2 cut(s) 479, 4243
BstAPI GCANNNNNTGC 1 cut(s) 868
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 2 cut(s) 1446, 3614
BstDSI CCRYGG 1 cut(s) 954
BstENI CCTNNNNNAGG 1 cut(s) 1763
BstF5I GGATG 6 cut(s) 319, 577, 2857, 3209, 3965, 4241
BstFNI CGCG 2 cut(s) 648, 650
BstHHI GCGC 3 cut(s) 648, 650, 4195
BstMAI GTCTC 7 cut(s) 920, 944, 1688, 1821, 2315, 3993, 4294
BstMWI GCNNNNNNNGC 8 cut(s) 645, 698, 868, 1378, 2117, 2516, 3893, 4322
BstNI CCWGG 8 cut(s) 26, 451, 746, 775, 806, 1721, 2660, 3101
BstNSI RCATGY 5 cut(s) 1363, 2013, 2042, 3549, 4467
BstPAI GACNNNNGTC 1 cut(s) 3687
BstSFI CTRYAG 4 cut(s) 217, 3040, 3436, 3952
BstSNI TACGTA 1 cut(s) 1446
BstUI CGCG 2 cut(s) 648, 650
BstV2I GAAGAC 1 cut(s) 3720
BstX2I RGATCY 1 cut(s) 3418
BstXI CCANNNNNNTGG 1 cut(s) 1364
BstYI RGATCY 1 cut(s) 3418
BstZ17I GTATAC 2 cut(s) 1087, 2971
Bsu36I CCTNAGG 1 cut(s) 3372
BsuI GTATCC 1 cut(s) 3418
BsuRI GGCC 6 cut(s) 247, 439, 1012, 1076, 1377, 3099
BtgI CCRYGG 1 cut(s) 954
BtrI CACGTC 1 cut(s) 4250
BtsCI GGATG 6 cut(s) 319, 577, 2857, 3209, 3965, 4241
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 9 cut(s) 597, 682, 1236, 1449, 1531, 1939, 2481, 3480, 3685
CaiI CAGNNNCTG 2 cut(s) 1496, 3100
CfoI GCGC 3 cut(s) 648, 650, 4195
Cfr13I GGNCC 8 cut(s) 438, 1375, 1686, 1948, 2573, 3097, 3751, 4174
DraI TTTAAA 2 cut(s) 2683, 4270
DraIII CACNNNGTG 3 cut(s) 842, 3614, 4109
DrdI GACNNNNNNGTC 1 cut(s) 1110
DseDI GACNNNNNNGTC 1 cut(s) 1110
Eam1104I CTCTTC 7 cut(s) 629, 1296, 1548, 1873, 2874, 3180, 4510
EarI CTCTTC 7 cut(s) 629, 1296, 1548, 1873, 2874, 3180, 4510
Eco105I TACGTA 1 cut(s) 1446
Eco130I CCWWGG 6 cut(s) 489, 954, 1468, 2115, 2136, 3969
Eco31I GGTCTC 1 cut(s) 4294
Eco32I GATATC 2 cut(s) 1675, 4369
Eco47I GGWCC 5 cut(s) 1686, 1948, 2573, 3751, 4174
Eco81I CCTNAGG 1 cut(s) 3372
Eco88I CYCGRG 4 cut(s) 1053, 2318, 2727, 4423
EcoNI CCTNNNNNAGG 1 cut(s) 1763
EcoO109I RGGNCCY 2 cut(s) 3097, 3751
EcoRI GAATTC 3 cut(s) 1428, 2914, 3486
EcoRII CCWGG 8 cut(s) 24, 449, 744, 773, 804, 1719, 2658, 3099
EcoRV GATATC 2 cut(s) 1675, 4369
EcoT14I CCWWGG 6 cut(s) 489, 954, 1468, 2115, 2136, 3969
EcoT22I ATGCAT 2 cut(s) 3081, 3967
ErhI CCWWGG 6 cut(s) 489, 954, 1468, 2115, 2136, 3969
Esp3I CGTCTC 1 cut(s) 944
FalI AAGNNNNNCTT 7 cut(s) 2349, 2381, 2979, 3011, 4309, 4341, 4504
FaqI GGGAC 5 cut(s) 7, 40, 1421, 3556, 4030
FauI CCCGC 3 cut(s) 1770, 2529, 2878
FauNDI CATATG 1 cut(s) 3766
FbaI TGATCA 4 cut(s) 1384, 1897, 2817, 3922
FblI GTMKAC 6 cut(s) 1086, 1996, 2970, 3052, 3681, 4114
FokI GGATG 6 cut(s) 326, 584, 2864, 3216, 3952, 4248
FspBI CTAG 6 cut(s) 147, 186, 1652, 2541, 3692, 3701
GlaI GCGC 3 cut(s) 647, 649, 4194
GsaI CCCAGC 2 cut(s) 444, 3577
GsuI CTGGAG 2 cut(s) 3542, 3767
HaeIII GGCC 6 cut(s) 247, 439, 1012, 1076, 1377, 3099
HapII CCGG 6 cut(s) 318, 1288, 1405, 1951, 2046, 3775
HhaI GCGC 3 cut(s) 648, 650, 4195
Hin6I GCGC 3 cut(s) 646, 648, 4193
HinP1I GCGC 3 cut(s) 646, 648, 4193
HincII GTYRAC 2 cut(s) 1115, 4420
HindII GTYRAC 2 cut(s) 1115, 4420
HindIII AAGCTT 6 cut(s) 750, 2220, 2508, 3127, 4286, 4448
HpaII CCGG 6 cut(s) 318, 1288, 1405, 1951, 2046, 3775
HpyCH4IV ACGT 4 cut(s) 1445, 3428, 3613, 4249
HpyF10VI GCNNNNNNNGC 8 cut(s) 645, 698, 868, 1378, 2117, 2516, 3893, 4322
HpySE526I ACGT 4 cut(s) 1445, 3428, 3613, 4249
HspAI GCGC 3 cut(s) 646, 648, 4193
KpnI GGTACC 1 cut(s) 962
Ksp22I TGATCA 4 cut(s) 1384, 1897, 2817, 3922
LguI GCTCTTC 2 cut(s) 629, 4510
LmnI GCTCC 2 cut(s) 2047, 3523
MaeI CTAG 6 cut(s) 147, 186, 1652, 2541, 3692, 3701
MaeII ACGT 4 cut(s) 1445, 3428, 3613, 4249
MaeIII GTNAC 7 cut(s) 179, 1231, 1441, 2735, 3406, 3429, 3663
MbiI CCGCTC 1 cut(s) 2536
MflI RGATCY 1 cut(s) 3418
MhlI GDGCHC 1 cut(s) 1054
MmeI TCCRAC 7 cut(s) 633, 1500, 1713, 2076, 2616, 3141, 3823
Mph1103I ATGCAT 2 cut(s) 3081, 3967
MslI CAYNNNNRTG 4 cut(s) 14, 687, 1362, 1415
MspA1I CMGCKG 1 cut(s) 3887
MspCI CTTAAG 2 cut(s) 479, 4243
MspI CCGG 6 cut(s) 318, 1288, 1405, 1951, 2046, 3775
Mva1269I GAATGC 6 cut(s) 703, 711, 1858, 1895, 2361, 2500
MvaI CCWGG 8 cut(s) 26, 451, 746, 775, 806, 1721, 2660, 3101
MvnI CGCG 2 cut(s) 648, 650
MwoI GCNNNNNNNGC 8 cut(s) 645, 698, 868, 1378, 2117, 2516, 3893, 4322
NciI CCSGG 6 cut(s) 319, 1289, 1406, 1952, 2046, 3776
NcoI CCATGG 1 cut(s) 954
NdeI CATATG 1 cut(s) 3766
NlaIV GGNNCC 5 cut(s) 952, 960, 2050, 3105, 3525
NmuCI GTSAC 2 cut(s) 1231, 3663
NsiI ATGCAT 2 cut(s) 3081, 3967
NspI RCATGY 5 cut(s) 1363, 2013, 2042, 3549, 4467
OliI CACNNNNGTG 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 2727
PauI GCGCGC 1 cut(s) 646
PciI ACATGT 2 cut(s) 1359, 4463
PciSI GCTCTTC 2 cut(s) 629, 4510
PctI GAATGC 6 cut(s) 703, 711, 1858, 1895, 2361, 2500
PfeI GAWTC 6 cut(s) 341, 1058, 1463, 2185, 2247, 4208
PflFI GACNNNGTC 1 cut(s) 4251
PflMI CCANNNNNTGG 2 cut(s) 495, 2287
PfoI TCCNGGA 2 cut(s) 1287, 2658
Ppu21I YACGTR 2 cut(s) 1446, 3614
PpuMI RGGWCCY 1 cut(s) 3751
PscI ACATGT 2 cut(s) 1359, 4463
PshAI GACNNNNGTC 1 cut(s) 3687
PshBI ATTAAT 1 cut(s) 3026
PsiI TTATAA 3 cut(s) 1040, 1134, 3477
Psp5II RGGWCCY 1 cut(s) 3751
Psp6I CCWGG 8 cut(s) 24, 449, 744, 773, 804, 1719, 2658, 3099
PspFI CCCAGC 2 cut(s) 440, 3573
PspGI CCWGG 8 cut(s) 24, 449, 744, 773, 804, 1719, 2658, 3099
PspN4I GGNNCC 5 cut(s) 952, 960, 2050, 3105, 3525
PspPI GGNCC 8 cut(s) 438, 1375, 1686, 1948, 2573, 3097, 3751, 4174
PspPPI RGGWCCY 1 cut(s) 3751
PspXI VCTCGAGB 1 cut(s) 2727
PstI CTGCAG 1 cut(s) 3044
PstNI CAGNNNCTG 2 cut(s) 1496, 3100
PsuI RGATCY 1 cut(s) 3418
PsyI GACNNNGTC 1 cut(s) 4251
PteI GCGCGC 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 3887
RseI CAYNNNNRTG 4 cut(s) 14, 687, 1362, 1415
SapI GCTCTTC 2 cut(s) 629, 4510
Sau96I GGNCC 8 cut(s) 438, 1375, 1686, 1948, 2573, 3097, 3751, 4174
SduI GDGCHC 1 cut(s) 1054
SfcI CTRYAG 4 cut(s) 217, 3040, 3436, 3952
Sfr274I CTCGAG 1 cut(s) 2727
SinI GGWCC 5 cut(s) 1686, 1948, 2573, 3751, 4174
SlaI CTCGAG 1 cut(s) 2727
SmiMI CAYNNNNRTG 4 cut(s) 14, 687, 1362, 1415
SmlI CTYRAG 6 cut(s) 129, 479, 1602, 2727, 4178, 4243
SmoI CTYRAG 6 cut(s) 129, 479, 1602, 2727, 4178, 4243
SnaBI TACGTA 1 cut(s) 1446
SpeI ACTAGT 1 cut(s) 185
SsiI CCGC 5 cut(s) 1044, 1777, 2517, 2536, 2885
SspMI CTAG 6 cut(s) 147, 186, 1652, 2541, 3692, 3701
StyI CCWWGG 6 cut(s) 489, 954, 1468, 2115, 2136, 3969
TaiI ACGT 4 cut(s) 1448, 3431, 3616, 4252
TaqI TCGA 6 cut(s) 326, 1172, 1426, 2728, 3960, 4371
TaqII GACCGA 1 cut(s) 3207
TatI WGTACW 6 cut(s) 583, 810, 2165, 3036, 4026, 4049
TauI GCSGC 2 cut(s) 1047, 2519
TfiI GAWTC 6 cut(s) 341, 1058, 1463, 2185, 2247, 4208
TscAI CASTG 9 cut(s) 604, 689, 1236, 1456, 1531, 1939, 2481, 3487, 3692
TseFI GTSAC 2 cut(s) 1231, 3663
Tsp45I GTSAC 2 cut(s) 1231, 3663
TspRI CASTG 9 cut(s) 604, 689, 1236, 1456, 1531, 1939, 2481, 3487, 3692
Tth111I GACNNNGTC 1 cut(s) 4251
Van91I CCANNNNNTGG 2 cut(s) 495, 2287
Vha464I CTTAAG 2 cut(s) 479, 4243
VpaK11BI GGWCC 5 cut(s) 1686, 1948, 2573, 3751, 4174
VspI ATTAAT 1 cut(s) 3026
XagI CCTNNNNNAGG 1 cut(s) 1763
XapI RAATTY 8 cut(s) 673, 964, 1428, 2102, 2914, 3253, 3486, 4310
XbaI TCTAGA 1 cut(s) 3691
XceI RCATGY 5 cut(s) 1363, 2013, 2042, 3549, 4467
XhoI CTCGAG 1 cut(s) 2727
XmiI GTMKAC 6 cut(s) 1086, 1996, 2970, 3052, 3681, 4114
XspI CTAG 6 cut(s) 147, 186, 1652, 2541, 3692, 3701
Zsp2I ATGCAT 2 cut(s) 3081, 3967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.