Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Forward (+)

44276678 .. 44284014

Gene Structure 7337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4494 bp

ATGACATTCACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATACAGAGTCCCCACTCTCATCTTCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGCTCTCTAACTCAAGTACCTTCTACTTCTAGTTCTGGTAGTTCTGAGCAGCCTAATGATAGTAATACCAGTCAAATTAACTACAACAAGAAATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCAGACACTTACCCTTCACCTCCTCAGACCCAATTCACCCCTCTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGAGTCTGAGAGCAAAGAGGAAGGTAATGGGGATGTGGGTTTTGCAGCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAATCTGATGGGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGCAGAGCTGGCAGCGCGCGTTGGAGGTGTACGAGTGGCTGAATTTGCGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAGGTGTACAATGCAATGATGGGTGTCTATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTAATGCGTGAGCGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTTAGGTCAGGTGCCATGGTACCAAATTTGGCTATTGAACTTTTGAATGAGGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGCGGCTGTGCTCGTGAATCCAAGTTGGAGGAGGCGGTGAAGGTATACGCTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTATATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAGGGGTTTTTCCCTGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCCGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTATGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACGTACACTGTTTTGATAGATTCCCTTGGCAAAGAAAATAAGATTACAGAGGCCGCAAATGTTATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGCTGGCAAACAAGTGGAGGCTCAAGAAACATTTGATTGCATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATATCTTTCTCAGGTCCAACGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGCGGGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTCGGTGGTATGAATGCACGGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTGAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCTGGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAATAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCTGATATATTGTAAAATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGACATGAAAGGCATTCTTTTTGACAGTATCTCCATATATGTTGATGTTATTGAAGTATATGAGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCAGGCTTTAATTGTTGATGGAAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCCGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGATCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGAATTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCGGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATATTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTGTCGTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCGAAGCTGAACACTTACAAAAGTTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACGATGATGAAACTATTTAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAACTGGTTTAGATCTGGATACATTACCCTATAGTTCAGTTATTGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACATGCTTCATTAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAGGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTCAATGCTCTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCGTGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGATGCATCCTTGGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACATTAAAGGCCTGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCTCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCACTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAAAGAGAAAGGGTAATTCAAGCTGATATCGAGGGAAGGAAAGAGAAGTTAGAAAAAATGAGAAAGAGGGGAATTGTTGACCCGAGTAGGGTGAGCAGGATTAGGAAGCTTAGAAAGAGGACATATATAAGACCGTCCATGTTATCAAACACCAAACAAATTGCATCAAAAAGAAGAGCTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1497

Amino Acids

169.26

Weight (kDa)

7.25

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	234 - 362	5.6e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	265 - 309	1.3e-09	PPR repeat family
PPR	PF01535	267 - 296	8.5e-06	PPR repeat
PPR_2	PF13041	298 - 349	2.9e-10	PPR repeat family
PPR_long	PF17177	321 - 460	1.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	324 - 383	1.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	7.9e-09	PPR repeat
PPR_2	PF13041	335 - 380	3.9e-15	PPR repeat family
PPR	PF01535	338 - 368	5.4e-07	PPR repeat
PPR_1	PF12854	367 - 398	1.6e-06	PPR repeat
PPR_2	PF13041	374 - 419	3.9e-12	PPR repeat family
PPR	PF01535	374 - 403	4.7e-08	PPR repeat
PPR_3	PF13812	394 - 454	2.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	429 - 489	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	441 - 488	1.8e-14	PPR repeat family
PPR_long	PF17177	459 - 559	4.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	475 - 503	8.2e-06	PPR repeat
PPR_2	PF13041	475 - 524	1e-12	PPR repeat family
PPR_3	PF13812	499 - 557	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	514 - 556	2.6e-07	PPR repeat family
TPR_24	PF23276	883 - 990	1.9e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	911 - 1007	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	953 - 1010	3.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	963 - 1007	2.8e-06	PPR repeat family
PPR_long	PF17177	982 - 1086	2.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	998 - 1047	1.1e-10	PPR repeat family
PPR	PF01535	1002 - 1031	5e-07	PPR repeat
PPR_3	PF13812	1021 - 1080	7.1e-08	Pentatricopeptide repeat domain
PPR	PF01535	1037 - 1066	7.6e-06	PPR repeat
TPR_24	PF23276	1117 - 1212	2.6e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1031, 1125, 3468
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	2 cut(s)	941, 949
AccB7I	CCANNNNNTGG	2 cut(s)	486, 2278
AccBSI	CCGCTC	2 cut(s)	880, 2527
AccI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4078
AccII	CGCG	2 cut(s)	639, 641
AciI	CCGC	9 cut(s)	880, 1035, 1067, 1488, 1768, 2508, 2527, 2876, 2968
AclWI	GGATC	2 cut(s)	3162, 3213
AcsI	RAATTY	9 cut(s)	200, 664, 955, 1419, 2093, 2905, 3244, 3477, 4274
AdeI	CACNNNGTG	3 cut(s)	833, 3605, 4073
AflII	CTTAAG	2 cut(s)	470, 4207
AflIII	ACRYGT	1 cut(s)	1350
AjiI	CACGTC	1 cut(s)	4214
AjnI	CCWGG	8 cut(s)	24, 735, 764, 795, 1710, 2035, 2649, 3090
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	1045
Alw26I	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3957
AlwI	GGATC	2 cut(s)	3162, 3213
AlwNI	CAGNNNCTG	1 cut(s)	3091
Ama87I	CYCGRG	3 cut(s)	2309, 2718, 4387
AoxI	GGCC	8 cut(s)	236, 428, 1001, 1366, 1485, 3088, 4023, 4265
ApoI	RAATTY	9 cut(s)	200, 664, 955, 1419, 2093, 2905, 3244, 3477, 4274
ArsI	GACNNNNNNTTYG	2 cut(s)	1484, 1516
AseI	ATTAAT	1 cut(s)	3017
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	3 cut(s)	639, 641, 672
AspS9I	GGNCC	9 cut(s)	429, 1366, 1677, 1939, 2564, 3088, 3742, 4138, 4266
AsuC2I	CCSGG	5 cut(s)	310, 1280, 1397, 1943, 3767
AvaI	CYCGRG	3 cut(s)	2309, 2718, 4387
AvaII	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4138
AxyI	CCTNAGG	1 cut(s)	3363
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BanI	GGYRCC	2 cut(s)	941, 949
BauI	CACGAG	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	3711
Bbv12I	GWGCWC	1 cut(s)	1045
BbvCI	CCTCAGC	1 cut(s)	3162
BceAI	ACGGC	1 cut(s)	4042
BciT130I	CCWGG	8 cut(s)	26, 737, 766, 797, 1712, 2037, 2651, 3092
BciVI	GTATCC	1 cut(s)	3409
BclI	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
BcnI	CCSGG	5 cut(s)	310, 1280, 1397, 1943, 3767
BcoDI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3957
BfaI	CTAG	5 cut(s)	138, 1643, 2532, 3683, 3692
BfmI	CTRYAG	3 cut(s)	208, 3031, 3427
BfrI	CTTAAG	2 cut(s)	470, 4207
BfuI	GTATCC	1 cut(s)	3409
BglII	AGATCT	1 cut(s)	3409
BlpI	GCTNAGC	2 cut(s)	771, 1173
Bme18I	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4138
BmeT110I	CYCGRG	3 cut(s)	2309, 2718, 4387
BmgBI	CACGTC	1 cut(s)	4214
BmgT120I	GGNCC	9 cut(s)	429, 1366, 1677, 1939, 2564, 3088, 3742, 4138, 4266
BmiI	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
BmrI	ACTGGG	2 cut(s)	406, 3859
BmuI	ACTGGG	2 cut(s)	406, 3859
BoxI	GACNNNNGTC	1 cut(s)	3678
BpiI	GAAGAC	1 cut(s)	3711
BpmI	CTGGAG	2 cut(s)	3533, 3758
Bpu10I	CCTNAGC	1 cut(s)	3162
Bpu1102I	GCTNAGC	2 cut(s)	771, 1173
BpuEI	CTTGAG	3 cut(s)	105, 1578, 4163
BpuMI	CCSGG	5 cut(s)	310, 1280, 1397, 1943, 3767
BsaAI	YACGTR	2 cut(s)	1437, 3605
BsaBI	GATNNNNATC	1 cut(s)	3447
BsaJI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3933
BsaXI	ACNNNNNCTCC	4 cut(s)	979, 1009, 2354, 2384
Bse118I	RCCGGY	1 cut(s)	2771
Bse21I	CCTNAGG	1 cut(s)	3363
Bse3DI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
Bse8I	GATNNNNATC	1 cut(s)	3447
BseBI	CCWGG	8 cut(s)	26, 737, 766, 797, 1712, 2037, 2651, 3092
BseDI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3933
BseGI	GGATG	8 cut(s)	310, 373, 568, 2848, 3200, 3929, 3931, 4205
BseJI	GATNNNNATC	1 cut(s)	3447
BseMI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
BsePI	GCGCGC	1 cut(s)	637
BseRI	GAGGAG	3 cut(s)	264, 1000, 1076
BseYI	CCCAGC	3 cut(s)	431, 3564, 4159
BsgI	GTGCAG	1 cut(s)	2842
Bsh1236I	CGCG	2 cut(s)	639, 641
BshFI	GGCC	8 cut(s)	238, 430, 1003, 1368, 1487, 3090, 4025, 4267
BshNI	GGYRCC	2 cut(s)	941, 949
BsiHKAI	GWGCWC	1 cut(s)	1045
BsiHKCI	CYCGRG	3 cut(s)	2309, 2718, 4387
BsiSI	CCGG	6 cut(s)	309, 1279, 1396, 1942, 2772, 3766
BslFI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 3994
BsmAI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3957
BsmFI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 3994
BsmI	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
BsnI	GGCC	8 cut(s)	238, 430, 1003, 1368, 1487, 3090, 4025, 4267
BsoBI	CYCGRG	3 cut(s)	2309, 2718, 4387
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp1407I	TGTACA	1 cut(s)	801
Bsp1720I	GCTNAGC	2 cut(s)	771, 1173
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	9 cut(s)	880, 1035, 1067, 1488, 1768, 2508, 2527, 2876, 2968
BspANI	GGCC	8 cut(s)	238, 430, 1003, 1368, 1487, 3090, 4025, 4267
BspFNI	CGCG	2 cut(s)	639, 641
BspLI	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
BspMAI	CTGCAG	1 cut(s)	3035
BspPI	GGATC	2 cut(s)	3162, 3213
BspQI	GCTCTTC	1 cut(s)	4474
BspT107I	GGYRCC	2 cut(s)	941, 949
BspTI	CTTAAG	2 cut(s)	470, 4207
BsrBI	CCGCTC	2 cut(s)	880, 2527
BsrDI	GCAATG	4 cut(s)	816, 1704, 2070, 2859
BsrFI	RCCGGY	1 cut(s)	2771
BsrGI	TGTACA	1 cut(s)	801
BssAI	RCCGGY	1 cut(s)	2771
BssECI	CCNNGG	9 cut(s)	24, 441, 480, 765, 945, 1459, 2106, 2127, 3933
BssHII	GCGCGC	1 cut(s)	637
BssNAI	GTATAC	2 cut(s)	1078, 2962
BssSI	CACGAG	1 cut(s)	1044
BssT1I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3933
Bst1107I	GTATAC	2 cut(s)	1078, 2962
Bst2BI	CACGAG	1 cut(s)	1044
Bst2UI	CCWGG	8 cut(s)	26, 737, 766, 797, 1712, 2037, 2651, 3092
Bst6I	CTCTTC	6 cut(s)	1287, 1539, 1864, 2865, 3171, 4474
BstAFI	CTTAAG	2 cut(s)	470, 4207
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	2 cut(s)	1437, 3605
BstDSI	CCRYGG	1 cut(s)	945
BstENI	CCTNNNNNAGG	1 cut(s)	1754
BstF5I	GGATG	8 cut(s)	310, 373, 568, 2848, 3200, 3929, 3931, 4205
BstFNI	CGCG	2 cut(s)	639, 641
BstHHI	GCGC	3 cut(s)	639, 641, 672
BstMAI	GTCTC	5 cut(s)	911, 1679, 1812, 2306, 3957
BstNI	CCWGG	8 cut(s)	26, 737, 766, 797, 1712, 2037, 2651, 3092
BstNSI	RCATGY	4 cut(s)	1354, 2004, 2033, 3540
BstPAI	GACNNNNGTC	1 cut(s)	3678
BstSFI	CTRYAG	3 cut(s)	208, 3031, 3427
BstSNI	TACGTA	1 cut(s)	1437
BstUI	CGCG	2 cut(s)	639, 641
BstV2I	GAAGAC	1 cut(s)	3711
BstX2I	RGATCY	1 cut(s)	3409
BstXI	CCANNNNNNTGG	1 cut(s)	1355
BstYI	RGATCY	1 cut(s)	3409
BstZ17I	GTATAC	2 cut(s)	1078, 2962
Bsu36I	CCTNAGG	1 cut(s)	3363
BsuI	GTATCC	1 cut(s)	3409
BsuRI	GGCC	8 cut(s)	238, 430, 1003, 1368, 1487, 3090, 4025, 4267
BtgI	CCRYGG	1 cut(s)	945
BtrI	CACGTC	1 cut(s)	4214
BtsCI	GGATG	8 cut(s)	310, 373, 568, 2848, 3200, 3929, 3931, 4205
BtsI	GCAGTG	1 cut(s)	1227
BtsIMutI	CAGTG	9 cut(s)	588, 673, 1227, 1440, 1522, 1930, 2472, 3471, 3676
CaiI	CAGNNNCTG	1 cut(s)	3091
CfoI	GCGC	3 cut(s)	639, 641, 672
Cfr10I	RCCGGY	1 cut(s)	2771
Cfr13I	GGNCC	9 cut(s)	429, 1366, 1677, 1939, 2564, 3088, 3742, 4138, 4266
DraI	TTTAAA	2 cut(s)	2674, 4234
DraIII	CACNNNGTG	3 cut(s)	833, 3605, 4073
Eam1104I	CTCTTC	6 cut(s)	1287, 1539, 1864, 2865, 3171, 4474
EarI	CTCTTC	6 cut(s)	1287, 1539, 1864, 2865, 3171, 4474
Eco105I	TACGTA	1 cut(s)	1437
Eco130I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3933
Eco147I	AGGCCT	1 cut(s)	4025
Eco32I	GATATC	2 cut(s)	1666, 4333
Eco47I	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4138
Eco81I	CCTNAGG	1 cut(s)	3363
Eco88I	CYCGRG	3 cut(s)	2309, 2718, 4387
EcoNI	CCTNNNNNAGG	1 cut(s)	1754
EcoO109I	RGGNCCY	2 cut(s)	3088, 3742
EcoRI	GAATTC	3 cut(s)	1419, 2905, 3477
EcoRII	CCWGG	8 cut(s)	24, 735, 764, 795, 1710, 2035, 2649, 3090
EcoRV	GATATC	2 cut(s)	1666, 4333
EcoT14I	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3933
EcoT22I	ATGCAT	2 cut(s)	3072, 3931
ErhI	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3933
FalI	AAGNNNNNCTT	7 cut(s)	2340, 2372, 2970, 3002, 4273, 4305, 4468
FaqI	GGGAC	5 cut(s)	7, 40, 1412, 3547, 3994
FauI	CCCGC	4 cut(s)	873, 1761, 2520, 2869
FauNDI	CATATG	1 cut(s)	3757
FbaI	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
FblI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4078
FokI	GGATG	8 cut(s)	317, 380, 575, 2855, 3207, 3916, 3938, 4212
FspBI	CTAG	5 cut(s)	138, 1643, 2532, 3683, 3692
GlaI	GCGC	3 cut(s)	638, 640, 671
GsaI	CCCAGC	3 cut(s)	435, 3568, 4163
GsuI	CTGGAG	2 cut(s)	3533, 3758
HaeIII	GGCC	8 cut(s)	238, 430, 1003, 1368, 1487, 3090, 4025, 4267
HapII	CCGG	6 cut(s)	309, 1279, 1396, 1942, 2772, 3766
HhaI	GCGC	3 cut(s)	639, 641, 672
Hin6I	GCGC	3 cut(s)	637, 639, 670
HinP1I	GCGC	3 cut(s)	637, 639, 670
HincII	GTYRAC	2 cut(s)	1106, 4384
HindII	GTYRAC	2 cut(s)	1106, 4384
HindIII	AAGCTT	5 cut(s)	741, 2211, 2499, 4250, 4412
HpaII	CCGG	6 cut(s)	309, 1279, 1396, 1942, 2772, 3766
HpyCH4IV	ACGT	3 cut(s)	1436, 3604, 4213
HpySE526I	ACGT	3 cut(s)	1436, 3604, 4213
HspAI	GCGC	3 cut(s)	637, 639, 670
KpnI	GGTACC	1 cut(s)	953
Ksp22I	TGATCA	4 cut(s)	1375, 1888, 2808, 3913
LguI	GCTCTTC	1 cut(s)	4474
LmnI	GCTCC	2 cut(s)	2038, 3514
MaeI	CTAG	5 cut(s)	138, 1643, 2532, 3683, 3692
MaeII	ACGT	3 cut(s)	1436, 3604, 4213
MaeIII	GTNAC	5 cut(s)	1222, 1432, 2726, 3397, 3654
MbiI	CCGCTC	2 cut(s)	880, 2527
MflI	RGATCY	1 cut(s)	3409
MhlI	GDGCHC	1 cut(s)	1045
MmeI	TCCRAC	8 cut(s)	624, 1038, 1491, 1704, 2067, 2607, 3132, 3814
Mph1103I	ATGCAT	2 cut(s)	3072, 3931
MslI	CAYNNNNRTG	4 cut(s)	14, 678, 1353, 1406
MspA1I	CMGCKG	2 cut(s)	2968, 3878
MspCI	CTTAAG	2 cut(s)	470, 4207
MspI	CCGG	6 cut(s)	309, 1279, 1396, 1942, 2772, 3766
Mva1269I	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
MvaI	CCWGG	8 cut(s)	26, 737, 766, 797, 1712, 2037, 2651, 3092
MvnI	CGCG	2 cut(s)	639, 641
NciI	CCSGG	5 cut(s)	310, 1280, 1397, 1943, 3767
NcoI	CCATGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	3757
NlaIV	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
NmuCI	GTSAC	2 cut(s)	1222, 3654
NsiI	ATGCAT	2 cut(s)	3072, 3931
NspI	RCATGY	4 cut(s)	1354, 2004, 2033, 3540
OliI	CACNNNNGTG	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	2718
PauI	GCGCGC	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	4025
PciI	ACATGT	1 cut(s)	1350
PciSI	GCTCTTC	1 cut(s)	4474
PctI	GAATGC	6 cut(s)	694, 702, 1849, 1886, 2352, 2491
PfeI	GAWTC	6 cut(s)	332, 1049, 1454, 2176, 2238, 4172
PflFI	GACNNNGTC	1 cut(s)	4215
PflMI	CCANNNNNTGG	2 cut(s)	486, 2278
PfoI	TCCNGGA	2 cut(s)	1278, 2649
Ppu21I	YACGTR	2 cut(s)	1437, 3605
PpuMI	RGGWCCY	1 cut(s)	3742
PscI	ACATGT	1 cut(s)	1350
PshAI	GACNNNNGTC	1 cut(s)	3678
PshBI	ATTAAT	1 cut(s)	3017
PsiI	TTATAA	3 cut(s)	1031, 1125, 3468
Psp5II	RGGWCCY	1 cut(s)	3742
Psp6I	CCWGG	8 cut(s)	24, 735, 764, 795, 1710, 2035, 2649, 3090
PspFI	CCCAGC	3 cut(s)	431, 3564, 4159
PspGI	CCWGG	8 cut(s)	24, 735, 764, 795, 1710, 2035, 2649, 3090
PspN4I	GGNNCC	5 cut(s)	943, 951, 2041, 3096, 3516
PspPI	GGNCC	9 cut(s)	429, 1366, 1677, 1939, 2564, 3088, 3742, 4138, 4266
PspPPI	RGGWCCY	1 cut(s)	3742
PspXI	VCTCGAGB	1 cut(s)	2718
PstI	CTGCAG	1 cut(s)	3035
PstNI	CAGNNNCTG	1 cut(s)	3091
PsuI	RGATCY	1 cut(s)	3409
PsyI	GACNNNGTC	1 cut(s)	4215
PteI	GCGCGC	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	3878
RseI	CAYNNNNRTG	4 cut(s)	14, 678, 1353, 1406
SapI	GCTCTTC	1 cut(s)	4474
Sau96I	GGNCC	9 cut(s)	429, 1366, 1677, 1939, 2564, 3088, 3742, 4138, 4266
SduI	GDGCHC	1 cut(s)	1045
SfcI	CTRYAG	3 cut(s)	208, 3031, 3427
Sfr274I	CTCGAG	1 cut(s)	2718
SinI	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4138
SlaI	CTCGAG	1 cut(s)	2718
SmiMI	CAYNNNNRTG	4 cut(s)	14, 678, 1353, 1406
SmlI	CTYRAG	6 cut(s)	120, 470, 1593, 2718, 4142, 4207
SmoI	CTYRAG	6 cut(s)	120, 470, 1593, 2718, 4142, 4207
SnaBI	TACGTA	1 cut(s)	1437
SseBI	AGGCCT	1 cut(s)	4025
SsiI	CCGC	9 cut(s)	880, 1035, 1067, 1488, 1768, 2508, 2527, 2876, 2968
SspMI	CTAG	5 cut(s)	138, 1643, 2532, 3683, 3692
StuI	AGGCCT	1 cut(s)	4025
StyI	CCWWGG	7 cut(s)	441, 480, 945, 1459, 2106, 2127, 3933
TaiI	ACGT	3 cut(s)	1439, 3607, 4216
TaqI	TCGA	5 cut(s)	317, 1163, 1417, 2719, 4335
TaqII	GACCGA	1 cut(s)	3198
TatI	WGTACW	6 cut(s)	574, 801, 2156, 3027, 3990, 4013
TauI	GCSGC	3 cut(s)	1038, 1490, 2510
TfiI	GAWTC	6 cut(s)	332, 1049, 1454, 2176, 2238, 4172
TscAI	CASTG	9 cut(s)	595, 680, 1227, 1447, 1522, 1930, 2472, 3478, 3683
TseFI	GTSAC	2 cut(s)	1222, 3654
Tsp45I	GTSAC	2 cut(s)	1222, 3654
TspRI	CASTG	9 cut(s)	595, 680, 1227, 1447, 1522, 1930, 2472, 3478, 3683
Tth111I	GACNNNGTC	1 cut(s)	4215
Van91I	CCANNNNNTGG	2 cut(s)	486, 2278
Vha464I	CTTAAG	2 cut(s)	470, 4207
VpaK11BI	GGWCC	5 cut(s)	1677, 1939, 2564, 3742, 4138
VspI	ATTAAT	1 cut(s)	3017
XagI	CCTNNNNNAGG	1 cut(s)	1754
XapI	RAATTY	9 cut(s)	200, 664, 955, 1419, 2093, 2905, 3244, 3477, 4274
XbaI	TCTAGA	1 cut(s)	3682
XceI	RCATGY	4 cut(s)	1354, 2004, 2033, 3540
XhoI	CTCGAG	1 cut(s)	2718
XmiI	GTMKAC	6 cut(s)	1077, 1987, 2961, 3043, 3672, 4078
XspI	CTAG	5 cut(s)	138, 1643, 2532, 3683, 3692
Zsp2I	ATGCAT	2 cut(s)	3072, 3931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.