Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

43395604 .. 43402369

Gene Structure 6766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4485 bp

ATGACATTCACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATACAGAGTCCCCACTCTCATCTTCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGCTCTCTAACTCAAGTACCTTCTACTTCTAGTTCTGAGCAGCCTAATGATAGTAATACTAGTCAAATTAACAACAAGAAGAAATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCAGACACTTACCCTTCACCTCCTCAGACCCAATTCACCCCTCTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGAGTCTGAGAGCAAAGAGGAAGGTAATGGGGATGTGGGTTTTGCAGCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAATCTGATGGGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGCAGAGCTGGCAGCGCGCGTTGGAGGTGTACGAGTGGCTGAATTTGCGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAGGTGTACAATGCAATGATGGGTGTCTATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTAATGCGTGAGCGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTTAGGTCAGGTGCCATGATACCAAATTTGGCTATTGAACTTTTGAATGAGGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGCGGCTGTGCTCGTGAATCCAAGTTGGAGGAGGCGGTGAAGGTATACGCTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTATATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAGGGGTTTTTCCCTGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCCGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTATGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACGTACACTGTTTTGATAGATTCCCTTGGCAAAGAAAATAAGATTACAGAGGCCGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGCTGGCAAACAAGTGGAGGCTCAAGAAACATTTGATTGCATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATGTCTTTCTCAGGTCCAACGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGCGGGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTCGGTGGTATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTGAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCTGGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAATAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCTGATATATTGTAAAATGGGTTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGACATGAAAGGCATTCTTTTTGACAGTATCTCCATATATGTTGATGTTATTGAAGTATATGGGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACAGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCAGGCTTTAATTGTTGATGGGAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCCGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGATCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGAATTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCGGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATATTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTGTCGTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCGAAGCTGAACACTTACAAAAGTTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACAATGATGAAACTATTTAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAACTGGTTTAGATCTGGATACATTACCCTATAGTTCAGTTATTGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACATGCTTCATAAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAGGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTCAATGCTCTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCGTGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGATGCATCCTTGGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACATTAAAGGCCTGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCTCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCACTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAAAGAGAAAGGGTAATTCAAGCTGATATCGAGGGAAGGAAAGAGAAGTTAGAAAAAATGAGAAAGAGGGGAATTGTTGACCCGAGTAGGGTGAGCAGGATTAGGAAGCTTAGAAAGAGGACATATATAAGACCGTCCATGTTATCAAACACCAAACAAATTGCATCAAAAAGAAGAGCTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1494

Amino Acids

168.89

Weight (kDa)

7.44

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	231 - 359	5.2e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	262 - 306	1.3e-09	PPR repeat family
PPR	PF01535	264 - 293	8.5e-06	PPR repeat
PPR_2	PF13041	295 - 346	3.1e-10	PPR repeat family
PPR_long	PF17177	318 - 457	1.8e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	321 - 380	1.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	329 - 361	7.9e-09	PPR repeat
PPR_2	PF13041	332 - 377	2.1e-15	PPR repeat family
PPR	PF01535	335 - 365	5.4e-07	PPR repeat
PPR_1	PF12854	364 - 395	1.6e-06	PPR repeat
PPR_2	PF13041	371 - 416	3.6e-12	PPR repeat family
PPR	PF01535	371 - 400	4.7e-08	PPR repeat
PPR_3	PF13812	391 - 451	2.3e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	426 - 486	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	438 - 485	1.8e-14	PPR repeat family
PPR_long	PF17177	456 - 557	3e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	472 - 500	8.2e-06	PPR repeat
PPR_2	PF13041	472 - 521	1e-12	PPR repeat family
PPR_3	PF13812	496 - 554	5.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	511 - 554	1.3e-07	PPR repeat family
TPR_24	PF23276	880 - 987	1.8e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	910 - 1004	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	950 - 1007	3.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	960 - 1004	2.8e-06	PPR repeat family
PPR_long	PF17177	980 - 1065	7.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	995 - 1044	1.1e-10	PPR repeat family
PPR	PF01535	999 - 1028	5e-07	PPR repeat
PPR_3	PF13812	1018 - 1077	7.1e-08	Pentatricopeptide repeat domain
PPR	PF01535	1034 - 1063	7.6e-06	PPR repeat
TPR_24	PF23276	1114 - 1209	2.7e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1022, 1116, 3459
AccB1I	GGYRCC	1 cut(s)	932
AccB7I	CCANNNNNTGG	2 cut(s)	477, 2269
AccBSI	CCGCTC	2 cut(s)	871, 2518
AccI	GTMKAC	6 cut(s)	1068, 1978, 2952, 3034, 3663, 4069
AccII	CGCG	2 cut(s)	630, 632
AciI	CCGC	9 cut(s)	871, 1026, 1058, 1479, 1759, 2499, 2518, 2867, 2959
AclWI	GGATC	2 cut(s)	3153, 3204
AcsI	RAATTY	9 cut(s)	191, 655, 946, 1410, 2084, 2896, 3235, 3468, 4265
AdeI	CACNNNGTG	3 cut(s)	824, 3596, 4064
AflII	CTTAAG	2 cut(s)	461, 4198
AflIII	ACRYGT	1 cut(s)	1341
AhlI	ACTAGT	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	4205
AjnI	CCWGG	8 cut(s)	24, 726, 755, 786, 1701, 2026, 2640, 3081
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	5 cut(s)	902, 1670, 1803, 2297, 3948
AlwI	GGATC	2 cut(s)	3153, 3204
AlwNI	CAGNNNCTG	1 cut(s)	3082
Ama87I	CYCGRG	3 cut(s)	2300, 2709, 4378
AoxI	GGCC	8 cut(s)	227, 419, 992, 1357, 1476, 3079, 4014, 4256
ApoI	RAATTY	9 cut(s)	191, 655, 946, 1410, 2084, 2896, 3235, 3468, 4265
ArsI	GACNNNNNNTTYG	2 cut(s)	1475, 1507
AseI	ATTAAT	1 cut(s)	3008
AspLEI	GCGC	3 cut(s)	630, 632, 663
AspS9I	GGNCC	9 cut(s)	420, 1357, 1668, 1930, 2555, 3079, 3733, 4129, 4257
AsuC2I	CCSGG	5 cut(s)	301, 1271, 1388, 1934, 3758
AvaI	CYCGRG	3 cut(s)	2300, 2709, 4378
AvaII	GGWCC	5 cut(s)	1668, 1930, 2555, 3733, 4129
AxyI	CCTNAGG	1 cut(s)	3354
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BanI	GGYRCC	1 cut(s)	932
BauI	CACGAG	1 cut(s)	1035
BbsI	GAAGAC	1 cut(s)	3702
Bbv12I	GWGCWC	1 cut(s)	1036
BbvCI	CCTCAGC	1 cut(s)	3153
BceAI	ACGGC	1 cut(s)	4033
BciT130I	CCWGG	8 cut(s)	26, 728, 757, 788, 1703, 2028, 2642, 3083
BciVI	GTATCC	1 cut(s)	3400
BclI	TGATCA	4 cut(s)	1366, 1879, 2799, 3904
BcnI	CCSGG	5 cut(s)	301, 1271, 1388, 1934, 3758
BcoDI	GTCTC	5 cut(s)	902, 1670, 1803, 2297, 3948
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	6 cut(s)	138, 168, 1634, 2523, 3674, 3683
BfmI	CTRYAG	3 cut(s)	199, 3022, 3418
BfrI	CTTAAG	2 cut(s)	461, 4198
BfuI	GTATCC	1 cut(s)	3400
BglII	AGATCT	1 cut(s)	3400
BlpI	GCTNAGC	2 cut(s)	762, 1164
Bme18I	GGWCC	5 cut(s)	1668, 1930, 2555, 3733, 4129
BmeT110I	CYCGRG	3 cut(s)	2300, 2709, 4378
BmgBI	CACGTC	1 cut(s)	4205
BmgT120I	GGNCC	9 cut(s)	420, 1357, 1668, 1930, 2555, 3079, 3733, 4129, 4257
BmiI	GGNNCC	4 cut(s)	934, 2032, 3087, 3507
BmrI	ACTGGG	2 cut(s)	397, 3850
BmuI	ACTGGG	2 cut(s)	397, 3850
BoxI	GACNNNNGTC	1 cut(s)	3669
BpiI	GAAGAC	1 cut(s)	3702
BpmI	CTGGAG	2 cut(s)	3524, 3749
Bpu10I	CCTNAGC	1 cut(s)	3153
Bpu1102I	GCTNAGC	2 cut(s)	762, 1164
BpuEI	CTTGAG	3 cut(s)	105, 1569, 4154
BpuMI	CCSGG	5 cut(s)	301, 1271, 1388, 1934, 3758
BsaAI	YACGTR	2 cut(s)	1428, 3596
BsaBI	GATNNNNATC	1 cut(s)	3438
BsaJI	CCNNGG	8 cut(s)	24, 432, 471, 756, 1450, 2097, 2118, 3924
BsaXI	ACNNNNNCTCC	4 cut(s)	970, 1000, 2345, 2375
Bse118I	RCCGGY	1 cut(s)	2762
Bse1I	ACTGG	9 cut(s)	403, 671, 1914, 1932, 3397, 3469, 3789, 3845, 4281
Bse21I	CCTNAGG	1 cut(s)	3354
Bse3DI	GCAATG	4 cut(s)	807, 1695, 2061, 2850
Bse8I	GATNNNNATC	1 cut(s)	3438
BseBI	CCWGG	8 cut(s)	26, 728, 757, 788, 1703, 2028, 2642, 3083
BseDI	CCNNGG	8 cut(s)	24, 432, 471, 756, 1450, 2097, 2118, 3924
BseGI	GGATG	8 cut(s)	301, 364, 559, 2839, 3191, 3920, 3922, 4196
BseJI	GATNNNNATC	1 cut(s)	3438
BseMI	GCAATG	4 cut(s)	807, 1695, 2061, 2850
BseNI	ACTGG	9 cut(s)	403, 671, 1914, 1932, 3397, 3469, 3789, 3845, 4281
BsePI	GCGCGC	1 cut(s)	628
BseRI	GAGGAG	3 cut(s)	255, 991, 1067
BseYI	CCCAGC	3 cut(s)	422, 3555, 4150
BsgI	GTGCAG	1 cut(s)	2833
Bsh1236I	CGCG	2 cut(s)	630, 632
BshFI	GGCC	8 cut(s)	229, 421, 994, 1359, 1478, 3081, 4016, 4258
BshNI	GGYRCC	1 cut(s)	932
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiHKCI	CYCGRG	3 cut(s)	2300, 2709, 4378
BsiSI	CCGG	6 cut(s)	300, 1270, 1387, 1933, 2763, 3757
BslFI	GGGAC	5 cut(s)	7, 40, 1403, 3538, 3985
BsmAI	GTCTC	5 cut(s)	902, 1670, 1803, 2297, 3948
BsmFI	GGGAC	5 cut(s)	7, 40, 1403, 3538, 3985
BsmI	GAATGC	6 cut(s)	685, 693, 1840, 1877, 2343, 2482
BsnI	GGCC	8 cut(s)	229, 421, 994, 1359, 1478, 3081, 4016, 4258
BsoBI	CYCGRG	3 cut(s)	2300, 2709, 4378
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp1407I	TGTACA	1 cut(s)	792
Bsp1720I	GCTNAGC	2 cut(s)	762, 1164
BspACI	CCGC	9 cut(s)	871, 1026, 1058, 1479, 1759, 2499, 2518, 2867, 2959
BspANI	GGCC	8 cut(s)	229, 421, 994, 1359, 1478, 3081, 4016, 4258
BspFNI	CGCG	2 cut(s)	630, 632
BspLI	GGNNCC	4 cut(s)	934, 2032, 3087, 3507
BspMAI	CTGCAG	1 cut(s)	3026
BspPI	GGATC	2 cut(s)	3153, 3204
BspQI	GCTCTTC	1 cut(s)	4465
BspT107I	GGYRCC	1 cut(s)	932
BspTI	CTTAAG	2 cut(s)	461, 4198
BsrBI	CCGCTC	2 cut(s)	871, 2518
BsrDI	GCAATG	4 cut(s)	807, 1695, 2061, 2850
BsrFI	RCCGGY	1 cut(s)	2762
BsrGI	TGTACA	1 cut(s)	792
BsrI	ACTGG	9 cut(s)	403, 671, 1914, 1932, 3397, 3469, 3789, 3845, 4281
BssAI	RCCGGY	1 cut(s)	2762
BssECI	CCNNGG	8 cut(s)	24, 432, 471, 756, 1450, 2097, 2118, 3924
BssHII	GCGCGC	1 cut(s)	628
BssNAI	GTATAC	2 cut(s)	1069, 2953
BssSI	CACGAG	1 cut(s)	1035
BssT1I	CCWWGG	6 cut(s)	432, 471, 1450, 2097, 2118, 3924
Bst1107I	GTATAC	2 cut(s)	1069, 2953
Bst2BI	CACGAG	1 cut(s)	1035
Bst2UI	CCWGG	8 cut(s)	26, 728, 757, 788, 1703, 2028, 2642, 3083
Bst6I	CTCTTC	6 cut(s)	1278, 1530, 1855, 2856, 3162, 4465
BstAFI	CTTAAG	2 cut(s)	461, 4198
BstAPI	GCANNNNNTGC	1 cut(s)	850
BstAUI	TGTACA	1 cut(s)	792
BstBAI	YACGTR	2 cut(s)	1428, 3596
BstENI	CCTNNNNNAGG	1 cut(s)	1745
BstF5I	GGATG	8 cut(s)	301, 364, 559, 2839, 3191, 3920, 3922, 4196
BstFNI	CGCG	2 cut(s)	630, 632
BstHHI	GCGC	3 cut(s)	630, 632, 663
BstMAI	GTCTC	5 cut(s)	902, 1670, 1803, 2297, 3948
BstNI	CCWGG	8 cut(s)	26, 728, 757, 788, 1703, 2028, 2642, 3083
BstNSI	RCATGY	4 cut(s)	1345, 1995, 2024, 3531
BstPAI	GACNNNNGTC	1 cut(s)	3669
BstSFI	CTRYAG	3 cut(s)	199, 3022, 3418
BstSNI	TACGTA	1 cut(s)	1428
BstUI	CGCG	2 cut(s)	630, 632
BstV2I	GAAGAC	1 cut(s)	3702
BstX2I	RGATCY	1 cut(s)	3400
BstXI	CCANNNNNNTGG	1 cut(s)	1346
BstYI	RGATCY	1 cut(s)	3400
BstZ17I	GTATAC	2 cut(s)	1069, 2953
Bsu36I	CCTNAGG	1 cut(s)	3354
BsuI	GTATCC	1 cut(s)	3400
BsuRI	GGCC	8 cut(s)	229, 421, 994, 1359, 1478, 3081, 4016, 4258
BtrI	CACGTC	1 cut(s)	4205
BtsCI	GGATG	8 cut(s)	301, 364, 559, 2839, 3191, 3920, 3922, 4196
BtsI	GCAGTG	1 cut(s)	1218
BtsIMutI	CAGTG	9 cut(s)	579, 664, 1218, 1431, 1513, 1921, 2463, 3462, 3667
CaiI	CAGNNNCTG	1 cut(s)	3082
CfoI	GCGC	3 cut(s)	630, 632, 663
Cfr10I	RCCGGY	1 cut(s)	2762
Cfr13I	GGNCC	9 cut(s)	420, 1357, 1668, 1930, 2555, 3079, 3733, 4129, 4257
DraI	TTTAAA	2 cut(s)	2665, 4225
DraIII	CACNNNGTG	3 cut(s)	824, 3596, 4064
Eam1104I	CTCTTC	6 cut(s)	1278, 1530, 1855, 2856, 3162, 4465
EarI	CTCTTC	6 cut(s)	1278, 1530, 1855, 2856, 3162, 4465
Eco105I	TACGTA	1 cut(s)	1428
Eco130I	CCWWGG	6 cut(s)	432, 471, 1450, 2097, 2118, 3924
Eco147I	AGGCCT	1 cut(s)	4016
Eco32I	GATATC	1 cut(s)	4324
Eco47I	GGWCC	5 cut(s)	1668, 1930, 2555, 3733, 4129
Eco81I	CCTNAGG	1 cut(s)	3354
Eco88I	CYCGRG	3 cut(s)	2300, 2709, 4378
EcoNI	CCTNNNNNAGG	1 cut(s)	1745
EcoO109I	RGGNCCY	2 cut(s)	3079, 3733
EcoRI	GAATTC	3 cut(s)	1410, 2896, 3468
EcoRII	CCWGG	8 cut(s)	24, 726, 755, 786, 1701, 2026, 2640, 3081
EcoRV	GATATC	1 cut(s)	4324
EcoT14I	CCWWGG	6 cut(s)	432, 471, 1450, 2097, 2118, 3924
EcoT22I	ATGCAT	2 cut(s)	3063, 3922
ErhI	CCWWGG	6 cut(s)	432, 471, 1450, 2097, 2118, 3924
FalI	AAGNNNNNCTT	7 cut(s)	2331, 2363, 2961, 2993, 4264, 4296, 4459
FaqI	GGGAC	5 cut(s)	7, 40, 1403, 3538, 3985
FauI	CCCGC	4 cut(s)	864, 1752, 2511, 2860
FauNDI	CATATG	1 cut(s)	3748
FbaI	TGATCA	4 cut(s)	1366, 1879, 2799, 3904
FblI	GTMKAC	6 cut(s)	1068, 1978, 2952, 3034, 3663, 4069
FokI	GGATG	8 cut(s)	308, 371, 566, 2846, 3198, 3907, 3929, 4203
FspBI	CTAG	6 cut(s)	138, 168, 1634, 2523, 3674, 3683
GlaI	GCGC	3 cut(s)	629, 631, 662
GsaI	CCCAGC	3 cut(s)	426, 3559, 4154
GsuI	CTGGAG	2 cut(s)	3524, 3749
HaeIII	GGCC	8 cut(s)	229, 421, 994, 1359, 1478, 3081, 4016, 4258
HapII	CCGG	6 cut(s)	300, 1270, 1387, 1933, 2763, 3757
HhaI	GCGC	3 cut(s)	630, 632, 663
Hin6I	GCGC	3 cut(s)	628, 630, 661
HinP1I	GCGC	3 cut(s)	628, 630, 661
HincII	GTYRAC	2 cut(s)	1097, 4375
HindII	GTYRAC	2 cut(s)	1097, 4375
HindIII	AAGCTT	5 cut(s)	732, 2202, 2490, 4241, 4403
HpaII	CCGG	6 cut(s)	300, 1270, 1387, 1933, 2763, 3757
HpyCH4IV	ACGT	3 cut(s)	1427, 3595, 4204
HpySE526I	ACGT	3 cut(s)	1427, 3595, 4204
HspAI	GCGC	3 cut(s)	628, 630, 661
Ksp22I	TGATCA	4 cut(s)	1366, 1879, 2799, 3904
LguI	GCTCTTC	1 cut(s)	4465
LmnI	GCTCC	2 cut(s)	2029, 3505
MaeI	CTAG	6 cut(s)	138, 168, 1634, 2523, 3674, 3683
MaeII	ACGT	3 cut(s)	1427, 3595, 4204
MaeIII	GTNAC	5 cut(s)	1213, 1423, 2717, 3388, 3645
MbiI	CCGCTC	2 cut(s)	871, 2518
MflI	RGATCY	1 cut(s)	3400
MhlI	GDGCHC	1 cut(s)	1036
MmeI	TCCRAC	8 cut(s)	615, 1029, 1482, 1695, 2058, 2598, 3123, 3805
Mph1103I	ATGCAT	2 cut(s)	3063, 3922
MslI	CAYNNNNRTG	4 cut(s)	14, 669, 1344, 1397
MspA1I	CMGCKG	2 cut(s)	2959, 3869
MspCI	CTTAAG	2 cut(s)	461, 4198
MspI	CCGG	6 cut(s)	300, 1270, 1387, 1933, 2763, 3757
Mva1269I	GAATGC	6 cut(s)	685, 693, 1840, 1877, 2343, 2482
MvaI	CCWGG	8 cut(s)	26, 728, 757, 788, 1703, 2028, 2642, 3083
MvnI	CGCG	2 cut(s)	630, 632
NciI	CCSGG	5 cut(s)	301, 1271, 1388, 1934, 3758
NdeI	CATATG	1 cut(s)	3748
NlaIV	GGNNCC	4 cut(s)	934, 2032, 3087, 3507
NmuCI	GTSAC	2 cut(s)	1213, 3645
NsiI	ATGCAT	2 cut(s)	3063, 3922
NspI	RCATGY	4 cut(s)	1345, 1995, 2024, 3531
OliI	CACNNNNGTG	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	2709
PauI	GCGCGC	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	4016
PciI	ACATGT	1 cut(s)	1341
PciSI	GCTCTTC	1 cut(s)	4465
PctI	GAATGC	6 cut(s)	685, 693, 1840, 1877, 2343, 2482
PfeI	GAWTC	6 cut(s)	323, 1040, 1445, 2167, 2229, 4163
PflFI	GACNNNGTC	1 cut(s)	4206
PflMI	CCANNNNNTGG	2 cut(s)	477, 2269
PfoI	TCCNGGA	2 cut(s)	1269, 2640
Ppu21I	YACGTR	2 cut(s)	1428, 3596
PpuMI	RGGWCCY	1 cut(s)	3733
PscI	ACATGT	1 cut(s)	1341
PshAI	GACNNNNGTC	1 cut(s)	3669
PshBI	ATTAAT	1 cut(s)	3008
PsiI	TTATAA	3 cut(s)	1022, 1116, 3459
Psp5II	RGGWCCY	1 cut(s)	3733
Psp6I	CCWGG	8 cut(s)	24, 726, 755, 786, 1701, 2026, 2640, 3081
PspFI	CCCAGC	3 cut(s)	422, 3555, 4150
PspGI	CCWGG	8 cut(s)	24, 726, 755, 786, 1701, 2026, 2640, 3081
PspN4I	GGNNCC	4 cut(s)	934, 2032, 3087, 3507
PspPI	GGNCC	9 cut(s)	420, 1357, 1668, 1930, 2555, 3079, 3733, 4129, 4257
PspPPI	RGGWCCY	1 cut(s)	3733
PspXI	VCTCGAGB	1 cut(s)	2709
PstI	CTGCAG	1 cut(s)	3026
PstNI	CAGNNNCTG	1 cut(s)	3082
PsuI	RGATCY	1 cut(s)	3400
PsyI	GACNNNGTC	1 cut(s)	4206
PteI	GCGCGC	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	3869
RseI	CAYNNNNRTG	4 cut(s)	14, 669, 1344, 1397
SapI	GCTCTTC	1 cut(s)	4465
Sau96I	GGNCC	9 cut(s)	420, 1357, 1668, 1930, 2555, 3079, 3733, 4129, 4257
SduI	GDGCHC	1 cut(s)	1036
SfcI	CTRYAG	3 cut(s)	199, 3022, 3418
Sfr274I	CTCGAG	1 cut(s)	2709
SinI	GGWCC	5 cut(s)	1668, 1930, 2555, 3733, 4129
SlaI	CTCGAG	1 cut(s)	2709
SmiMI	CAYNNNNRTG	4 cut(s)	14, 669, 1344, 1397
SmlI	CTYRAG	6 cut(s)	120, 461, 1584, 2709, 4133, 4198
SmoI	CTYRAG	6 cut(s)	120, 461, 1584, 2709, 4133, 4198
SnaBI	TACGTA	1 cut(s)	1428
SpeI	ACTAGT	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	4016
SsiI	CCGC	9 cut(s)	871, 1026, 1058, 1479, 1759, 2499, 2518, 2867, 2959
SspMI	CTAG	6 cut(s)	138, 168, 1634, 2523, 3674, 3683
StuI	AGGCCT	1 cut(s)	4016
StyI	CCWWGG	6 cut(s)	432, 471, 1450, 2097, 2118, 3924
TaiI	ACGT	3 cut(s)	1430, 3598, 4207
TaqI	TCGA	5 cut(s)	308, 1154, 1408, 2710, 4326
TaqII	GACCGA	1 cut(s)	3189
TatI	WGTACW	6 cut(s)	565, 792, 2147, 3018, 3981, 4004
TauI	GCSGC	3 cut(s)	1029, 1481, 2501
TfiI	GAWTC	6 cut(s)	323, 1040, 1445, 2167, 2229, 4163
TscAI	CASTG	9 cut(s)	586, 671, 1218, 1438, 1513, 1921, 2463, 3469, 3674
TseFI	GTSAC	2 cut(s)	1213, 3645
Tsp45I	GTSAC	2 cut(s)	1213, 3645
TspRI	CASTG	9 cut(s)	586, 671, 1218, 1438, 1513, 1921, 2463, 3469, 3674
Tth111I	GACNNNGTC	1 cut(s)	4206
Van91I	CCANNNNNTGG	2 cut(s)	477, 2269
Vha464I	CTTAAG	2 cut(s)	461, 4198
VpaK11BI	GGWCC	5 cut(s)	1668, 1930, 2555, 3733, 4129
VspI	ATTAAT	1 cut(s)	3008
XagI	CCTNNNNNAGG	1 cut(s)	1745
XapI	RAATTY	9 cut(s)	191, 655, 946, 1410, 2084, 2896, 3235, 3468, 4265
XbaI	TCTAGA	1 cut(s)	3673
XceI	RCATGY	4 cut(s)	1345, 1995, 2024, 3531
XhoI	CTCGAG	1 cut(s)	2709
XmiI	GTMKAC	6 cut(s)	1068, 1978, 2952, 3034, 3663, 4069
XspI	CTAG	6 cut(s)	138, 168, 1634, 2523, 3674, 3683
Zsp2I	ATGCAT	2 cut(s)	3063, 3922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.