Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009290.1

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

90845 .. 95683

Gene Structure 4839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009290.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4491 bp

atgacattcacaggagtgctgtccctggctacctcacccttattccatacagagtccccactctcatcttcttcttcttcttcaaataaggtatgcaaaagcacttgtctttcttgctctctaactcaagtaccttctacttctagttctgagcagcctaatgatagtaatactagtcaaattaacaacaacaagaaatttagctatagcagagcttcaccctcagtcagatggcctcatttgaagctctcagacacttacccttcacctcctcagacccaattcacccctcttgtggaggatgccgggttttcgacccaactctctgattctgagtctgagagcaaagaggaaggtaatggggatgtgggttttgcagcatcatctttggataagaatgatgaaacccagttagtgttggggaggcccagcaagaccaaggcaaagaaaatgaccaaattggctcttaagagagccaaggattggagggagagagtcaagttctttactgataggattttggggttgaaatctgatgggtttgtggctgatgtgctggatgataggaaagtacagatgacccccactgatttttgctttgtggtgaaatgggtggggcagcagagctggcagcgcgcgttggaggtgtacgagtggctgaatttgcgccactggtatgccccgaatgcacgaatgcttgcaactatcttggctgttcttggaaaggctaaccaggaagctttggctgtggagatatacaccagggctgagcctgaaattggtaatacagtccaggtgtacaatgcaatgatgggtgtctatgcacgaagtggtcggtttaagagagtgcaagaactgctcaacttaatgcgtgagcgggggtgtgagccagaccttgtgagtctcaacactttgataaatgctcgtcttaggtcaggtgccatggtaccaaatttggctattgaacttttgaatgaggtgaggaggtcgggtcttaggccagatataatcacttacaatactcttataagcggctgtgctcgtgaatccaagttggaagaggcggtgaaggtatacgctgacatggaagcacataactgtcaacctgatctttggacttataatgccatgatttcggtatatggcagatgtgggcagtcgagcaaagctgagcagctctttaaggaattggagtcaaaggggtttttccctgatgcagtgacatataattctttgttgtatgcttttgcaagagaacttaatatagaaaaagtccgggatattggtgaagagatggtgaaaatggggtttgctaaagatgagatgacatacaatactattatccacatgtatggaaagcagggccagcatgatcaagcacagcagatttaccgggacatgaaaatgttgggtcgaattcctgatgctgttacgtacactgttttgatagattcccttggcaaagaaaataagattacagaggccgcaaatgtgatgtcagaaatgttggacagtggagtaaaacccactcttcggacttatagtgctttaatgtgtggatatgcgaaggctggcaaacaagtggaggctcaagaaacatttgattgcatgattaagtctgggattagaccagatcatctagcatactcagttatgcttgatatctttctcaggtccaacgagacaaagaaggcaatgacattgtaccaggaaatgctgcatgatggtttcatgccagataatgccctttacgaggtaatgttgcgggtgcttggaactgaaaacaaattggaaactattgaaaaagtgattagagacatggaaaaggtcggtggtatgaatgcacaggtcatctcttcaattcttgttaagggagaatgctatgatcatgctgctaaaatgttgagattagccatcaccagtggttatgaactggaccgggaaagtcttttttctattctcagttcatatagttcttgtggtagacactcagaagcatgtgagttgcttgcatttttgaaagaacatgctcctggttccaaccaactgataactgaggcaatggttgtcatacaatgcaaggctggtgaatttgatgctgccttggcagaatataataattccaagggtttccattcttttagcagaagttgttctatgtatgaaatcttgattcaaggctgtgagaagaatgaactctttggtgaagcttcacaggtttattctgacatgagattctatggtattgaaccatcagagcatctttaccaaattatggtgctgatatattgtaaaatgggtttccccgagacagcccaccatttgattgagcaggcagacatgaaaggcattctttttgacagtatctccatatatgttgatgttattgaagtatatgggaaattgaagctatggcagaaagctgaaagtttggtgggaagtcttaaacaaagatgtaaaacagtggataggaaggtctggaatgccttgatacaagcttatgccgcaagtggttgctatgagcgggctagagtgatctttaacacaatgacaagagatggtccttccccaacggtagagtctgttaatggtcttttgcaggctttaattgttgatgggaggttggacgaactttatgttcttatccaggagttgcaagatatgggttttaaaataagcaagagttcaattctgttgatgcttgaagcatttgctcgagctggtaacatatttgaggtgaagaaaatatatcatggaatgaaggctgccggttattttcctacaatggatagtttcagaattatgatcaagttattgtgcagggggaaacgagtaagggatgttgaagcaatggtttctgagatggaagaggcgggtttcaagcctgatctttcaatatggaattccttgcttaaattatatgcaggaattgaggatttcaaaaagacagttaatgtataccagcggattaaagaagctgaacttcaaccagatgaagatacttacaatacattaattatattgtactgcagagatcgtagaccagaagaaggtttgtcgttgatgcatgaaatgagaaggcagggcctggaaccgaagctgaacacttacaaaagtttaatttcagcatttggtaagcagaagttgttggatcaagctgaggaactttttgaagagttaaggtctaatggatgtaaattggatcgatcattttatcatacgatgatgaaactatttagaaattctggaaaccatgccaaagctgaaatgctgctgtctgtgatgaaggaggctggaatagaacccaactttgccacaatgcacttgcttatggtttcttatggcagctctggacagcctcaggaagcagaaaaagtgcttgacaatttgaaagtaactggtttagatctggatacattaccctatagttcagttattgatgcttatctaaggaatggagattataacactggaattcaaaagctcaatgagatgaagaaaggtggtctggagccagatcatagaatatggacatgcttcataagggctgcaagtttgtcccagcagacaagtgaagcctttgttcttctaaatgcactacgtgatgctggatttgatatcccaattaggcttttgaaggaaaaatctgagtcactcattccagatgtagaccactgtctagagaaactagaacccttagaagacaatgcagccttcaattttgtcaatgctctggaggacctcttgtgggcatatgaactccgggctactgcttcatgggttttccaactggcagtaaagagaggcatctataaccgtgatgtgttcagagtcgctgacaaggactggggtgctgattttaggaagttgtcagctggttctgctcttgttggtcttactttatggcttgatcagatgcaggatgcatccttggagggttatccagagtctcccaagtcagtcgttctgataacagggacatctgagtacaacatggtttcacttaatagtacattaaaggcctgcctttgggaaattggttcaccttttctgccgtgtaaaacacgaagtggtctacttgtagcaaaagcacactctctcagaatgtggttaaaggactccccgttttgtttggaccttgagttgaaagatgccccagcactccctgaatcaaactcaatgcagctcattgatggatgcttcttaagacgtggtcttgttcctgcatttaaagaaataaatgagaagcttggattagtgaggcccaagaaatttgcaagactggctttgctatctgatgaaaaaagagagagggtaattcaagctgatatcgagggaaggaaagagaagttagaaaaaatgagaaagaggggaattgttgacccgagtagggtgagcaggattaggaagcttagaaagaggacatatataagaccgtccatgttatcaaacaccaaacaaattgcatcaaaaagaagagctttggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1496

Amino Acids

169.04

Weight (kDa)

7.25

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1028, 1122, 3465
Acc65I	GGTACC	1 cut(s)	946
AccB1I	GGYRCC	2 cut(s)	938, 946
AccB7I	CCANNNNNTGG	2 cut(s)	483, 2275
AccBSI	CCGCTC	2 cut(s)	877, 2524
AccI	GTMKAC	6 cut(s)	1074, 1984, 2958, 3040, 3669, 4075
AccII	CGCG	2 cut(s)	636, 638
AciI	CCGC	9 cut(s)	877, 1032, 1064, 1485, 1765, 2505, 2524, 2873, 2965
AclWI	GGATC	2 cut(s)	3159, 3210
AcsI	RAATTY	9 cut(s)	197, 661, 952, 1416, 2090, 2902, 3241, 3474, 4271
AdeI	CACNNNGTG	3 cut(s)	830, 3602, 4070
AflII	CTTAAG	2 cut(s)	467, 4204
AflIII	ACRYGT	1 cut(s)	1347
AhlI	ACTAGT	1 cut(s)	173
AjiI	CACGTC	1 cut(s)	4211
AjnI	CCWGG	8 cut(s)	24, 732, 761, 792, 1707, 2032, 2646, 3087
AleI	CACNNNNGTG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	5 cut(s)	908, 1676, 1809, 2303, 3954
AlwI	GGATC	2 cut(s)	3159, 3210
AlwNI	CAGNNNCTG	1 cut(s)	3088
Ama87I	CYCGRG	3 cut(s)	2306, 2715, 4384
AoxI	GGCC	8 cut(s)	233, 425, 998, 1363, 1482, 3085, 4020, 4262
ApoI	RAATTY	9 cut(s)	197, 661, 952, 1416, 2090, 2902, 3241, 3474, 4271
ArsI	GACNNNNNNTTYG	2 cut(s)	1481, 1513
AseI	ATTAAT	1 cut(s)	3014
Asp700I	GAANNNNTTC	1 cut(s)	2152
Asp718I	GGTACC	1 cut(s)	946
AspLEI	GCGC	3 cut(s)	636, 638, 669
AspS9I	GGNCC	9 cut(s)	426, 1363, 1674, 1936, 2561, 3085, 3739, 4135, 4263
AsuC2I	CCSGG	5 cut(s)	307, 1277, 1394, 1940, 3764
AvaI	CYCGRG	3 cut(s)	2306, 2715, 4384
AvaII	GGWCC	5 cut(s)	1674, 1936, 2561, 3739, 4135
AxyI	CCTNAGG	1 cut(s)	3360
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BanI	GGYRCC	2 cut(s)	938, 946
BauI	CACGAG	1 cut(s)	1041
BbsI	GAAGAC	1 cut(s)	3708
Bbv12I	GWGCWC	1 cut(s)	1042
BbvCI	CCTCAGC	1 cut(s)	3159
BceAI	ACGGC	1 cut(s)	4039
BciT130I	CCWGG	8 cut(s)	26, 734, 763, 794, 1709, 2034, 2648, 3089
BciVI	GTATCC	1 cut(s)	3406
BclI	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
BcnI	CCSGG	5 cut(s)	307, 1277, 1394, 1940, 3764
BcoDI	GTCTC	5 cut(s)	908, 1676, 1809, 2303, 3954
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	6 cut(s)	144, 174, 1640, 2529, 3680, 3689
BfmI	CTRYAG	3 cut(s)	205, 3028, 3424
BfrI	CTTAAG	2 cut(s)	467, 4204
BfuI	GTATCC	1 cut(s)	3406
BglII	AGATCT	1 cut(s)	3406
BlpI	GCTNAGC	2 cut(s)	768, 1170
Bme18I	GGWCC	5 cut(s)	1674, 1936, 2561, 3739, 4135
BmeT110I	CYCGRG	3 cut(s)	2306, 2715, 4384
BmgBI	CACGTC	1 cut(s)	4211
BmgT120I	GGNCC	9 cut(s)	426, 1363, 1674, 1936, 2561, 3085, 3739, 4135, 4263
BmiI	GGNNCC	5 cut(s)	940, 948, 2038, 3093, 3513
BmrI	ACTGGG	2 cut(s)	403, 3856
BmuI	ACTGGG	2 cut(s)	403, 3856
BoxI	GACNNNNGTC	1 cut(s)	3675
BpiI	GAAGAC	1 cut(s)	3708
BpmI	CTGGAG	2 cut(s)	3530, 3755
Bpu10I	CCTNAGC	1 cut(s)	3159
Bpu1102I	GCTNAGC	2 cut(s)	768, 1170
BpuEI	CTTGAG	3 cut(s)	111, 1575, 4160
BpuMI	CCSGG	5 cut(s)	307, 1277, 1394, 1940, 3764
Bsa29I	ATCGAT	1 cut(s)	3205
BsaAI	YACGTR	2 cut(s)	1434, 3602
BsaBI	GATNNNNATC	1 cut(s)	3444
BsaJI	CCNNGG	9 cut(s)	24, 438, 477, 762, 942, 1456, 2103, 2124, 3930
BsaXI	ACNNNNNCTCC	4 cut(s)	976, 1006, 2351, 2381
Bse118I	RCCGGY	1 cut(s)	2768
Bse1I	ACTGG	9 cut(s)	409, 677, 1920, 1938, 3403, 3475, 3795, 3851, 4287
Bse21I	CCTNAGG	1 cut(s)	3360
Bse3DI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
Bse8I	GATNNNNATC	1 cut(s)	3444
BseBI	CCWGG	8 cut(s)	26, 734, 763, 794, 1709, 2034, 2648, 3089
BseCI	ATCGAT	1 cut(s)	3205
BseDI	CCNNGG	9 cut(s)	24, 438, 477, 762, 942, 1456, 2103, 2124, 3930
BseGI	GGATG	8 cut(s)	307, 370, 565, 2845, 3197, 3926, 3928, 4202
BseJI	GATNNNNATC	1 cut(s)	3444
BseMI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
BseNI	ACTGG	9 cut(s)	409, 677, 1920, 1938, 3403, 3475, 3795, 3851, 4287
BsePI	GCGCGC	1 cut(s)	634
BseRI	GAGGAG	2 cut(s)	261, 997
BseYI	CCCAGC	3 cut(s)	428, 3561, 4156
BsgI	GTGCAG	1 cut(s)	2839
Bsh1236I	CGCG	2 cut(s)	636, 638
BshFI	GGCC	8 cut(s)	235, 427, 1000, 1365, 1484, 3087, 4022, 4264
BshNI	GGYRCC	2 cut(s)	938, 946
BshVI	ATCGAT	1 cut(s)	3205
BsiHKAI	GWGCWC	1 cut(s)	1042
BsiHKCI	CYCGRG	3 cut(s)	2306, 2715, 4384
BsiSI	CCGG	6 cut(s)	306, 1276, 1393, 1939, 2769, 3763
BslFI	GGGAC	5 cut(s)	7, 40, 1409, 3544, 3991
BsmAI	GTCTC	5 cut(s)	908, 1676, 1809, 2303, 3954
BsmFI	GGGAC	5 cut(s)	7, 40, 1409, 3544, 3991
BsmI	GAATGC	6 cut(s)	691, 699, 1846, 1883, 2349, 2488
BsnI	GGCC	8 cut(s)	235, 427, 1000, 1365, 1484, 3087, 4022, 4264
BsoBI	CYCGRG	3 cut(s)	2306, 2715, 4384
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp1407I	TGTACA	1 cut(s)	798
Bsp1720I	GCTNAGC	2 cut(s)	768, 1170
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	9 cut(s)	877, 1032, 1064, 1485, 1765, 2505, 2524, 2873, 2965
BspANI	GGCC	8 cut(s)	235, 427, 1000, 1365, 1484, 3087, 4022, 4264
BspDI	ATCGAT	1 cut(s)	3205
BspFNI	CGCG	2 cut(s)	636, 638
BspLI	GGNNCC	5 cut(s)	940, 948, 2038, 3093, 3513
BspMAI	CTGCAG	1 cut(s)	3032
BspPI	GGATC	2 cut(s)	3159, 3210
BspQI	GCTCTTC	1 cut(s)	4471
BspT107I	GGYRCC	2 cut(s)	938, 946
BspTI	CTTAAG	2 cut(s)	467, 4204
BsrBI	CCGCTC	2 cut(s)	877, 2524
BsrDI	GCAATG	4 cut(s)	813, 1701, 2067, 2856
BsrFI	RCCGGY	1 cut(s)	2768
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	9 cut(s)	409, 677, 1920, 1938, 3403, 3475, 3795, 3851, 4287
BssAI	RCCGGY	1 cut(s)	2768
BssECI	CCNNGG	9 cut(s)	24, 438, 477, 762, 942, 1456, 2103, 2124, 3930
BssHII	GCGCGC	1 cut(s)	634
BssNAI	GTATAC	2 cut(s)	1075, 2959
BssSI	CACGAG	1 cut(s)	1041
BssT1I	CCWWGG	7 cut(s)	438, 477, 942, 1456, 2103, 2124, 3930
Bst1107I	GTATAC	2 cut(s)	1075, 2959
Bst2BI	CACGAG	1 cut(s)	1041
Bst2UI	CCWGG	8 cut(s)	26, 734, 763, 794, 1709, 2034, 2648, 3089
Bst6I	CTCTTC	7 cut(s)	1053, 1284, 1536, 1861, 2862, 3168, 4471
BstAFI	CTTAAG	2 cut(s)	467, 4204
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstAUI	TGTACA	1 cut(s)	798
BstBAI	YACGTR	2 cut(s)	1434, 3602
BstDSI	CCRYGG	1 cut(s)	942
BstENI	CCTNNNNNAGG	1 cut(s)	1751
BstF5I	GGATG	8 cut(s)	307, 370, 565, 2845, 3197, 3926, 3928, 4202
BstFNI	CGCG	2 cut(s)	636, 638
BstHHI	GCGC	3 cut(s)	636, 638, 669
BstMAI	GTCTC	5 cut(s)	908, 1676, 1809, 2303, 3954
BstNI	CCWGG	8 cut(s)	26, 734, 763, 794, 1709, 2034, 2648, 3089
BstNSI	RCATGY	4 cut(s)	1351, 2001, 2030, 3537
BstPAI	GACNNNNGTC	1 cut(s)	3675
BstSFI	CTRYAG	3 cut(s)	205, 3028, 3424
BstSNI	TACGTA	1 cut(s)	1434
BstUI	CGCG	2 cut(s)	636, 638
BstV2I	GAAGAC	1 cut(s)	3708
BstX2I	RGATCY	1 cut(s)	3406
BstXI	CCANNNNNNTGG	1 cut(s)	1352
BstYI	RGATCY	1 cut(s)	3406
BstZ17I	GTATAC	2 cut(s)	1075, 2959
Bsu15I	ATCGAT	1 cut(s)	3205
Bsu36I	CCTNAGG	1 cut(s)	3360
BsuI	GTATCC	1 cut(s)	3406
BsuRI	GGCC	8 cut(s)	235, 427, 1000, 1365, 1484, 3087, 4022, 4264
BsuTUI	ATCGAT	1 cut(s)	3205
BtgI	CCRYGG	1 cut(s)	942
BtrI	CACGTC	1 cut(s)	4211
BtsCI	GGATG	8 cut(s)	307, 370, 565, 2845, 3197, 3926, 3928, 4202
BtsI	GCAGTG	1 cut(s)	1224
BtsIMutI	CAGTG	9 cut(s)	585, 670, 1224, 1437, 1519, 1927, 2469, 3468, 3673
CaiI	CAGNNNCTG	1 cut(s)	3088
CfoI	GCGC	3 cut(s)	636, 638, 669
Cfr10I	RCCGGY	1 cut(s)	2768
Cfr13I	GGNCC	9 cut(s)	426, 1363, 1674, 1936, 2561, 3085, 3739, 4135, 4263
ClaI	ATCGAT	1 cut(s)	3205
DraI	TTTAAA	2 cut(s)	2671, 4231
DraIII	CACNNNGTG	3 cut(s)	830, 3602, 4070
Eam1104I	CTCTTC	7 cut(s)	1053, 1284, 1536, 1861, 2862, 3168, 4471
EarI	CTCTTC	7 cut(s)	1053, 1284, 1536, 1861, 2862, 3168, 4471
Eco105I	TACGTA	1 cut(s)	1434
Eco130I	CCWWGG	7 cut(s)	438, 477, 942, 1456, 2103, 2124, 3930
Eco147I	AGGCCT	1 cut(s)	4022
Eco32I	GATATC	3 cut(s)	1663, 3619, 4330
Eco47I	GGWCC	5 cut(s)	1674, 1936, 2561, 3739, 4135
Eco81I	CCTNAGG	1 cut(s)	3360
Eco88I	CYCGRG	3 cut(s)	2306, 2715, 4384
EcoNI	CCTNNNNNAGG	1 cut(s)	1751
EcoO109I	RGGNCCY	2 cut(s)	3085, 3739
EcoRI	GAATTC	3 cut(s)	1416, 2902, 3474
EcoRII	CCWGG	8 cut(s)	24, 732, 761, 792, 1707, 2032, 2646, 3087
EcoRV	GATATC	3 cut(s)	1663, 3619, 4330
EcoT14I	CCWWGG	7 cut(s)	438, 477, 942, 1456, 2103, 2124, 3930
EcoT22I	ATGCAT	2 cut(s)	3069, 3928
ErhI	CCWWGG	7 cut(s)	438, 477, 942, 1456, 2103, 2124, 3930
FalI	AAGNNNNNCTT	7 cut(s)	2337, 2369, 2967, 2999, 4270, 4302, 4465
FaqI	GGGAC	5 cut(s)	7, 40, 1409, 3544, 3991
FauI	CCCGC	4 cut(s)	870, 1758, 2517, 2866
FauNDI	CATATG	1 cut(s)	3754
FbaI	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
FblI	GTMKAC	6 cut(s)	1074, 1984, 2958, 3040, 3669, 4075
FokI	GGATG	8 cut(s)	314, 377, 572, 2852, 3204, 3913, 3935, 4209
FspBI	CTAG	6 cut(s)	144, 174, 1640, 2529, 3680, 3689
GlaI	GCGC	3 cut(s)	635, 637, 668
GsaI	CCCAGC	3 cut(s)	432, 3565, 4160
GsuI	CTGGAG	2 cut(s)	3530, 3755
HaeIII	GGCC	8 cut(s)	235, 427, 1000, 1365, 1484, 3087, 4022, 4264
HapII	CCGG	6 cut(s)	306, 1276, 1393, 1939, 2769, 3763
HhaI	GCGC	3 cut(s)	636, 638, 669
Hin6I	GCGC	3 cut(s)	634, 636, 667
HinP1I	GCGC	3 cut(s)	634, 636, 667
HincII	GTYRAC	2 cut(s)	1103, 4381
HindII	GTYRAC	2 cut(s)	1103, 4381
HindIII	AAGCTT	5 cut(s)	738, 2208, 2496, 4247, 4409
HpaII	CCGG	6 cut(s)	306, 1276, 1393, 1939, 2769, 3763
HpyCH4IV	ACGT	3 cut(s)	1433, 3601, 4210
HpySE526I	ACGT	3 cut(s)	1433, 3601, 4210
HspAI	GCGC	3 cut(s)	634, 636, 667
KpnI	GGTACC	1 cut(s)	950
Ksp22I	TGATCA	4 cut(s)	1372, 1885, 2805, 3910
LguI	GCTCTTC	1 cut(s)	4471
LmnI	GCTCC	2 cut(s)	2035, 3511
MaeI	CTAG	6 cut(s)	144, 174, 1640, 2529, 3680, 3689
MaeII	ACGT	3 cut(s)	1433, 3601, 4210
MaeIII	GTNAC	5 cut(s)	1219, 1429, 2723, 3394, 3651
MbiI	CCGCTC	2 cut(s)	877, 2524
MflI	RGATCY	1 cut(s)	3406
MhlI	GDGCHC	1 cut(s)	1042
MmeI	TCCRAC	8 cut(s)	621, 1035, 1488, 1701, 2064, 2604, 3129, 3811
Mph1103I	ATGCAT	2 cut(s)	3069, 3928
MroXI	GAANNNNTTC	1 cut(s)	2152
MslI	CAYNNNNRTG	4 cut(s)	14, 675, 1350, 1403
MspA1I	CMGCKG	2 cut(s)	2965, 3875
MspCI	CTTAAG	2 cut(s)	467, 4204
MspI	CCGG	6 cut(s)	306, 1276, 1393, 1939, 2769, 3763
Mva1269I	GAATGC	6 cut(s)	691, 699, 1846, 1883, 2349, 2488
MvaI	CCWGG	8 cut(s)	26, 734, 763, 794, 1709, 2034, 2648, 3089
MvnI	CGCG	2 cut(s)	636, 638
NciI	CCSGG	5 cut(s)	307, 1277, 1394, 1940, 3764
NcoI	CCATGG	1 cut(s)	942
NdeI	CATATG	1 cut(s)	3754
NlaIV	GGNNCC	5 cut(s)	940, 948, 2038, 3093, 3513
NmuCI	GTSAC	2 cut(s)	1219, 3651
NsiI	ATGCAT	2 cut(s)	3069, 3928
NspI	RCATGY	4 cut(s)	1351, 2001, 2030, 3537
OliI	CACNNNNGTG	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	2715
PauI	GCGCGC	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	4022
PciI	ACATGT	1 cut(s)	1347
PciSI	GCTCTTC	1 cut(s)	4471
PctI	GAATGC	6 cut(s)	691, 699, 1846, 1883, 2349, 2488
PdmI	GAANNNNTTC	1 cut(s)	2152
PfeI	GAWTC	6 cut(s)	329, 1046, 1451, 2173, 2235, 4169
PflFI	GACNNNGTC	1 cut(s)	4212
PflMI	CCANNNNNTGG	2 cut(s)	483, 2275
PfoI	TCCNGGA	2 cut(s)	1275, 2646
Ppu21I	YACGTR	2 cut(s)	1434, 3602
PpuMI	RGGWCCY	1 cut(s)	3739
PscI	ACATGT	1 cut(s)	1347
PshAI	GACNNNNGTC	1 cut(s)	3675
PshBI	ATTAAT	1 cut(s)	3014
PsiI	TTATAA	3 cut(s)	1028, 1122, 3465
Psp5II	RGGWCCY	1 cut(s)	3739
Psp6I	CCWGG	8 cut(s)	24, 732, 761, 792, 1707, 2032, 2646, 3087
PspFI	CCCAGC	3 cut(s)	428, 3561, 4156
PspGI	CCWGG	8 cut(s)	24, 732, 761, 792, 1707, 2032, 2646, 3087
PspN4I	GGNNCC	5 cut(s)	940, 948, 2038, 3093, 3513
PspPI	GGNCC	9 cut(s)	426, 1363, 1674, 1936, 2561, 3085, 3739, 4135, 4263
PspPPI	RGGWCCY	1 cut(s)	3739
PspXI	VCTCGAGB	1 cut(s)	2715
PstI	CTGCAG	1 cut(s)	3032
PstNI	CAGNNNCTG	1 cut(s)	3088
PsuI	RGATCY	1 cut(s)	3406
PsyI	GACNNNGTC	1 cut(s)	4212
PteI	GCGCGC	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	3875
RseI	CAYNNNNRTG	4 cut(s)	14, 675, 1350, 1403
SapI	GCTCTTC	1 cut(s)	4471
Sau96I	GGNCC	9 cut(s)	426, 1363, 1674, 1936, 2561, 3085, 3739, 4135, 4263
SduI	GDGCHC	1 cut(s)	1042
SfcI	CTRYAG	3 cut(s)	205, 3028, 3424
Sfr274I	CTCGAG	1 cut(s)	2715
SinI	GGWCC	5 cut(s)	1674, 1936, 2561, 3739, 4135
SlaI	CTCGAG	1 cut(s)	2715
SmiMI	CAYNNNNRTG	4 cut(s)	14, 675, 1350, 1403
SmlI	CTYRAG	6 cut(s)	126, 467, 1590, 2715, 4139, 4204
SmoI	CTYRAG	6 cut(s)	126, 467, 1590, 2715, 4139, 4204
SnaBI	TACGTA	1 cut(s)	1434
SpeI	ACTAGT	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	4022
SsiI	CCGC	9 cut(s)	877, 1032, 1064, 1485, 1765, 2505, 2524, 2873, 2965
SspMI	CTAG	6 cut(s)	144, 174, 1640, 2529, 3680, 3689
StuI	AGGCCT	1 cut(s)	4022
StyI	CCWWGG	7 cut(s)	438, 477, 942, 1456, 2103, 2124, 3930
TaiI	ACGT	3 cut(s)	1436, 3604, 4213
TaqI	TCGA	6 cut(s)	314, 1160, 1414, 2716, 3205, 4332
TatI	WGTACW	5 cut(s)	571, 798, 3024, 3987, 4010
TauI	GCSGC	3 cut(s)	1035, 1487, 2507
TfiI	GAWTC	6 cut(s)	329, 1046, 1451, 2173, 2235, 4169
TscAI	CASTG	9 cut(s)	592, 677, 1224, 1444, 1519, 1927, 2469, 3475, 3680
TseFI	GTSAC	2 cut(s)	1219, 3651
Tsp45I	GTSAC	2 cut(s)	1219, 3651
TspRI	CASTG	9 cut(s)	592, 677, 1224, 1444, 1519, 1927, 2469, 3475, 3680
Tth111I	GACNNNGTC	1 cut(s)	4212
Van91I	CCANNNNNTGG	2 cut(s)	483, 2275
Vha464I	CTTAAG	2 cut(s)	467, 4204
VpaK11BI	GGWCC	5 cut(s)	1674, 1936, 2561, 3739, 4135
VspI	ATTAAT	1 cut(s)	3014
XagI	CCTNNNNNAGG	1 cut(s)	1751
XapI	RAATTY	9 cut(s)	197, 661, 952, 1416, 2090, 2902, 3241, 3474, 4271
XbaI	TCTAGA	1 cut(s)	3679
XceI	RCATGY	4 cut(s)	1351, 2001, 2030, 3537
XhoI	CTCGAG	1 cut(s)	2715
XmiI	GTMKAC	6 cut(s)	1074, 1984, 2958, 3040, 3669, 4075
XmnI	GAANNNNTTC	1 cut(s)	2152
XspI	CTAG	6 cut(s)	144, 174, 1640, 2529, 3680, 3689
Zsp2I	ATGCAT	2 cut(s)	3069, 3928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.